An Annotated Checklist of European Basidiomycetes Related to White Rot of Grapevine (Vitis Vinifera)
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Genome Sequence Analysis of Auricularia Heimuer Combined with Genetic Linkage Map
Journal of Fungi Article Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map Ming Fang 1, Xiaoe Wang 2, Ying Chen 2, Peng Wang 2, Lixin Lu 2, Jia Lu 2, Fangjie Yao 1,2,* and Youmin Zhang 1,* 1 Lab of genetic breeding of edible mushromm, Horticultural, College of Horticulture, Jilin Agricultural University, Changchun 130118, China; [email protected] 2 Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China; [email protected] (X.W.); [email protected] (Y.C.); [email protected] (P.W.); [email protected] (L.L.); [email protected] (J.L.) * Correspondence: [email protected] (F.Y.); [email protected] (Y.Z.) Received: 3 March 2020; Accepted: 12 March 2020; Published: 16 March 2020 Abstract: Auricularia heimuer is one of the most popular edible fungi in China. In this study, the whole genome of A. heimuer was sequenced on the Illumina HiSeq X system and compared with other mushrooms genomes. As a wood-rotting fungus, a total of 509 carbohydrate-active enzymes (CAZymes) were annotated in order to explore its potential capabilities on wood degradation. The glycoside hydrolases (GH) family genes in the A. heimuer genome were more abundant than the genes in the other 11 mushrooms genomes. The A. heimuer genome contained 102 genes encoding class III, IV, and V ethanol dehydrogenases. Evolutionary analysis based on 562 orthologous single-copy genes from 15 mushrooms showed that Auricularia formed an early independent branch of Agaricomycetes. The mating-type locus of A. heimuer was located on linkage group 8 by genetic linkage analysis. -
Studies on Ear Fungus-Auricularia from the Woodland of Nameri National Park, Sonitpur District, Assam
International Journal of Interdisciplinary and Multidisciplinary Studies (IJIMS), 2014, Vol 1, No.5, 262-265. 262 Available online at http://www.ijims.com ISSN: 2348 – 0343 Studies on Ear Fungus-Auricularia from the Woodland of Nameri National Park, Sonitpur District, Assam. M.P. Choudhury1*, Dr.T.C Sarma2 1.Department of Botany, Nowgong College, Nagaon -782001, Assam, India. 2.Department of Botany, Gauhati University,Guwahati-7810 14, Assam, India. *Corresponding author: M.P. Choudhury Abstract Auricularia is the genus of the order Auriculariales with more than 10 species. It is also called ear fungus due to its morphological similarities with human ear and has considerable mythological importance. Auricularia auricula is the type species of the order Auriculariales. Different species of Auricularia are edible and some have medicinal importance and still investigations are going on other species to find out their medicinal properties. Extensive woodland of Nameri National Park provides ideal condition for the growth of different species of Auricularia. In this context the present study has been undertaken to study the taxonomy and diversity of different species of Auricularia and bring together information of its ethenomycological uses. As a result of field and laboratory study four different species of Auricularia were collected of which 3 species were identified and one species remain unidentified. Key Words: Auricularia, Taxonomy, Diversity, Nameri National Park. Introduction Auricularia belongs to the order Auriculariales is the largest genus of jelly fungi. They are among the most common and widely distributed members of macrofungi, which generally occurs as saprophytes on wood, logs, branch and twigs causing severe degrees of white rotting of forest trees. -
Annotated Check List and Host Index Arizona Wood
Annotated Check List and Host Index for Arizona Wood-Rotting Fungi Item Type text; Book Authors Gilbertson, R. L.; Martin, K. J.; Lindsey, J. P. Publisher College of Agriculture, University of Arizona (Tucson, AZ) Rights Copyright © Arizona Board of Regents. The University of Arizona. Download date 28/09/2021 02:18:59 Link to Item http://hdl.handle.net/10150/602154 Annotated Check List and Host Index for Arizona Wood - Rotting Fungi Technical Bulletin 209 Agricultural Experiment Station The University of Arizona Tucson AÏfJ\fOTA TED CHECK LI5T aid HOST INDEX ford ARIZONA WOOD- ROTTlNg FUNGI /. L. GILßERTSON K.T IyIARTiN Z J. P, LINDSEY3 PRDFE550I of PLANT PATHOLOgY 2GRADUATE ASSISTANT in I?ESEARCI-4 36FZADAATE A5 S /STANT'" TEACHING Z z l'9 FR5 1974- INTRODUCTION flora similar to that of the Gulf Coast and the southeastern United States is found. Here the major tree species include hardwoods such as Arizona is characterized by a wide variety of Arizona sycamore, Arizona black walnut, oaks, ecological zones from Sonoran Desert to alpine velvet ash, Fremont cottonwood, willows, and tundra. This environmental diversity has resulted mesquite. Some conifers, including Chihuahua pine, in a rich flora of woody plants in the state. De- Apache pine, pinyons, junipers, and Arizona cypress tailed accounts of the vegetation of Arizona have also occur in association with these hardwoods. appeared in a number of publications, including Arizona fungi typical of the southeastern flora those of Benson and Darrow (1954), Nichol (1952), include Fomitopsis ulmaria, Donkia pulcherrima, Kearney and Peebles (1969), Shreve and Wiggins Tyromyces palustris, Lopharia crassa, Inonotus (1964), Lowe (1972), and Hastings et al. -
Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
<I>Clitopilus Byssisedoides</I>
MYCOTAXON Volume 112, pp. 225–229 April–June 2010 Clitopilus byssisedoides, a new species from a hothouse in Germany Machiel Noordeloos1, Delia Co-David1 & Andreas Gminder2 [email protected] Netherlands Centre for Biodiversity Naturalis (section NHN) P.O. Box 9514, 2300 RA Leiden, The Netherlands 2Dorfstrasse 27, D-07751 Jena, Germany Abstract — Clitopilus byssisedoides is described as a new species found in a hothouse in Botanischer Garten Jena, in Jena, Germany, of unknown, possibly tropical origin. In this study, it is described, illustrated and distinguished from other pleurotoid Clitopilus species with rhodocyboid spores, particularly from other members of (Rhodocybe) sect. Claudopodes Key words — Entolomataceae, phylogeny, taxonomy Introduction Gminder (2005) described a remarkable pleurotoid species with rhodocyboid spores from a hothouse in the botanical garden in Jena, Germany. It was provisionally called “Rhodocybe byssisedoides” because of its resemblance to Entoloma byssisedum (Pers.) Donk. In a recent molecular phylogenetic study of the Entolomataceae (where this new species was included as “Rhodocybe sp.”), it has been shown that Clitopilus is nested within Rhodocybe. As a result, both genera were merged into Clitopilus sensu lato (Co-David et al. 2009). In this study, we formally describe the new species, Clitopilus byssisedoides and compare it to the other pleurotoid taxa. Material and methods The morphology was studied on dried material with standard methods, using sections mounted in either ammonia 5% or Congo red and a Leica DM1000 microscope. Microscopic structures were drawn with help of a drawing tube. 226 ... Noordeloos, Co-David & Gminder Taxonomic description Clitopilus byssisedoides Gminder, Noordel. & Co-David, sp. nov. MycoBank # 515443 Fig. -
<I>Coltricia Australica</I>
ISSN (print) 0093-4666 © 2012. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/122.123 Volume 122, pp. 123–128 October–December 2012 Coltricia australica sp. nov. (Hymenochaetales, Basidiomycota) from Australia Li-Wei Zhou1* & Leho Tedersoo2 1State Key Laboratory of Forest and Soil Ecology, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, P. R. China 2Institue of Ecology and Earth Sciences and Natural History Museum, University of Tartu, 14A Ravila, 50411 Tartu, Estonia * Correspondence to: [email protected] Abstract — Coltricia australica sp. nov. is described and illustrated from Tasmania, Australia. It is characterized by its annual and centrally stipitate basidiocarps with concentrically zonate and glabrous pilei when dry, angular pores of 3–4 per mm, and ellipsoid, thin- to thick- walled, smooth, pale yellowish, and cyanophilous basidiospores. This species is terrestrial in angiosperm forests. Key words — Hymenochaetaceae, polypore, taxonomy Introduction Coltricia Gray, typified by C. connata Gray [= C. perennis (L.) Murrill], is a cosmopolitan genus of Hymenochaetales and has been well studied in Africa (Ryvarden & Johansen 1980), Asia (Núñez & Ryvarden 2000, Dai & Cui 2005, Dai et al. 2010, Dai 2010, 2012, Dai & Li 2012, Baltazar & Silveira 2012), Europe (Ryvarden & Gilbertson 1993), Neotropics (Ryvarden 2004, Baltazar et al. 2010), and North America (Gilbertson & Ryvarden 1986). Coltricia differs from other genera in Hymenochaetales by the combination of annual stipitate and fragile (when dry) basidiocarps, a monomitic hyphal system, and colored slightly to distinctly thick-walled smooth basidiospores (Dai 2010). Coltriciella Murrill, the most morphologically similar genus to Coltricia, differs by its ornamented basidiospores (Dai 2010). -
Hymenochaetaceae from Paraguay: Revision of the Family and New Records
Current Research in Environmental & Applied Mycology (Journal of Fungal Biology) 10(1): 242–261 (2020) ISSN 2229-2225 www.creamjournal.org Article Doi 10.5943/cream/10/1/24 Hymenochaetaceae from Paraguay: revision of the family and new records Maubet Y1, Campi M1* and Robledo G2,3,4 1Universidad Nacional de Asunción. Laboratorio de Análisis de Recursos Vegetales Área Micología-Facultad de Ciencias Exactas y Naturales 2BioTecA3 – Centro de Biotecnología Aplicada al Agro y Alimentos, Facultad de Ciencias Agropecuarias – Univ. Nac. de Córdoba, Ing. Agr. Félix Aldo Marrone 746 – Planta Baja CC509 – CP 5000, Ciudad Universitaria, Córdoba, Argentina 3CONICET, Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina 4Fundación Fungicosmos, www.fungicosmos.org, Córdoba, Argentina Maubet Y, Campi M, Robledo G 2020 – Hymenochaetaceae from Paraguay: revision of the family and new records. Current Research in Environmental & Applied Mycology (Journal of Fungal Biology) 10(1), 242–261, Doi 10.5943/cream/10/1/24 Abstract A synopsis of species of Hymenochaetaceae from five departments of Paraguay (Alto Paraguay, Boquerón, Central, Cordillera and Paraguarí) is presented. Thirteen species from nine genera are reported, of which eleven are recorded for the first time. Descriptions and macro- and microscopic illustrations are presented for each species. Discussions on their taxonomy and ecology are provided. Key words – fungal diversity – Hymenochaetales – neotropical polypores – taxonomy Introduction Hymenochaetaceae was proposed by Donk (1948) and is characterized by the permanent xantochroic reaction (a dark coloration in alkali), the lack of clamp connections and the presence of setae in some species (Donk 1948, Hibbett et al. 2014, Ryvarden 2004). Most of the species of this family were traditionally placed among two main genera: Phellinus s.l. -
Laetisaria Arvalis (Aphyllophorales, Corticiaceae): a Possible Biological Control Agent for Rhizoctonia Solani and Pythium Species1
LAETISARIA ARVALIS (APHYLLOPHORALES, CORTICIACEAE): A POSSIBLE BIOLOGICAL CONTROL AGENT FOR RHIZOCTONIA SOLANI AND PYTHIUM SPECIES1 H. H. BURDSALL, JR. Center for Forest Mycology Research, Forest Products Laboratory2 USDA, Forest Service, Madison, Wisconsin 53705 H. C. HOCH Department of Plant Pathology, New York State Agricultural Experiment Station, Cornell University, Geneva, New York 14456 M. G. BOOSALIS Department of Plant Pathology, University of Nebraska, Lincoln, Nebraska 68583 AND E. C. SETLIFF State University of New York, College of Environmental Science and Forestry. School of Biology, Chemistry, and Forestry, Syracuse, New York 13210 SUMMARY Laetisaria arvalis, a soil-inhabiting basidiomycete, is described from culture as a new species. Descriptions and illustrations of the basidiocarps and cultures are provided and the relationship of L. arvalis to Phanero chaete as well as its potential importance as a biological control agent are discussed. About 1960, M. G. Boosalis isolated a fungus with clamp connections from soil planted to sugar beets (Beta vulgaris L.) for more than 50 yr near Scottsbluff, Scotts Bluff County, Neb. His early studies of this isolate indicated that it might be used as a biological control agent against Thanatephorus cucumerus (Frank) Donk (anamorph : Rhizo ctonia solani Kuhn) the cause of a root rot of sugar beets. Recently the 1This article was written arid prepared by U.S. Government employees on official time, and it is therefore in the public domain. 2Maintained at Madison, Wis., in cooperation with the University of Wisconsin. 728 729 BURDSALL ET AL. : LAETISARIA ARVALIS isolate has been reported to be a hyperparasite of R. solani (Odvody et al., 1977) and a possible biological control agent of Pythium ultimum Trow (Hoch and Abawi, 1979). -
Research Journal of Pharmaceutical, Biological and Chemical Sciences
ISSN: 0975-8585 Research Journal of Pharmaceutical, Biological and Chemical Sciences Phytochemical and Mineral Elements Composition of Bondazewia berkeleyi, Auricularia auricula and Ganoderma lucidum Fruiting Bodies. Emmanuel E Essien*, Victor N Mkpenie, and Stella M Akpan. Department of Chemistry, University of Uyo, Akwa Ibom State, Nigeria. ABSTRACT Fruiting bodies of wild edible medicinal mushrooms, Bondazewia berkeleyi, Auricularia auricula and Ganoderma lucidum, were analyzed for the presence of secondary metabolites and concentrations of toxic (Cd, Cr, Ni, Pb) and essential (Co, Cu, K, Li, Mn, Na, Zn) elements. The results revealed the presence of alkaloids, flavonoids, triterpenoids, saponins and carbohydrates in varied amounts. Tannins and phlobatannins were not detected. The levels (in ppm) of Na (156.80±310), K (246.20±6.62), Li (10.53±2.10), Zn (30.80±2.30), Cu (3.80±0.10), Mn (18.40±2.24), Co (2.98±0.17), Ni (0.024±0.080) and Cd (0.004±0.012) were highest in G. lucidum. Auricularia auricula showed the highest concentration (in ppm) of Pb (0.027±0.012) and Cr (0.005±0.100). However, the levels of the metals did not exceed the FAO/WHO stipulated dietary standards. This is the first chemical assessment of B. berkeleyi polypore. Keywords: Mushroom, Polypore, Secondary metabolites, Mineral nutrients, Dietary standards. *Corresponding author March – April 2015 RJPBCS 6(2) Page No. 200 ISSN: 0975-8585 INTRODUCTION Mushrooms are plant-like microorganisms, which grow like plant but are without chlorophyll. They depend on other organisms or plants for their nutrition. Information available in literature shows that mushrooms were first known to early Greeks and Romans who divided them into edible, poisonous, and medicinal mushrooms [1,2]. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D.