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Genetic Variability and Divergence of Neutrodiaptomus Tumidus Kiefer 1937
Young et al. Zoological Studies 2014, 53:22 http://www.zoologicalstudies.com/content/53/1/22 RESEARCH ARTICLE Open Access Genetic variability and divergence of Neutrodiaptomus tumidus Kiefer 1937 (Copepoda: Calonida) among 10 subpopulations in the high mountain range of Taiwan and their phylogeographical relationships indicated by mtDNA COI gene Shuh-Sen Young1*, Yan-Ying Lee1 and Min-Yun Liu2 Abstract Background: In the mountain area of Taiwan, we investigated 10 subpopulations of Neutrodiaptomus tumidus Kiefer 1937 living in isolated alpine ponds or lakes. We used mitochondrial DNA cytochrome C oxidase subunit I (COI) sequence as molecular marker to investigate the population genetic structure and their phylogeographical relationships. Results: We obtained 179 sequences from 10 subpopulations and found 94 haplotypes. Nucleotide composition was AT-rich. Haplotype diversity (Hd) and nucleotide diversity (π) indicated significant genetic differences between subpopulations (Hd = 0.131 ~ 0.990; π = 0.0002 ~ 0.0084); genetic differentiation index (Fst) and gene flow index (Nm) also exhibited significant genetic diversification between subpopulations (Fst = 0.334 ~ 0.997; Nm =0~1).Using Tajima’s D and Fu and Li’s D*andF* as neutrality tests, we found that the nucleotide variation within the population was consistent with the neutral theory except in the JiaLuoHu subpopulation. The JiaLuoHu subpopulation significantly deviated from the neutral theory and was speculated to have experienced a bottleneck effect. According to the phylogenetic tree, these alpine lake subpopulations could be divided into four phylogroups (northern region, Xueshan group, central region, and southwestern region). Xueshan group contains one subpopulation, DuRongTan, which is a unique group relative to other groups. -
Molecular Systematics of Freshwater Diaptomid Species of the Genus Neodiaptomus from Andaman Islands, India
www.genaqua.org ISSN 2459-1831 Genetics of Aquatic Organisms 2: 13-22 (2018) DOI: 10.4194/2459-1831-v2_1_03 RESEARCH PAPER Molecular Systematics of Freshwater Diaptomid Species of the Genus Neodiaptomus from Andaman Islands, India B. Dilshad Begum1, G. Dharani2, K. Altaff3,* 1 Justice Basheer Ahmed Sayeed College for Women, P. G. & Research Department of Zoology, Teynampet, Chennai - 600 018, India. 2 Ministry of Earth Sciences, Earth System Science Organization, National Institute of Ocean Technology, Chennai - 600 100, India. 3 AMET University, Department of Marine Biotechnology, Chennai - 603112, India. * Corresponding Author: Tel.: +9444108110; Received 10 April 2018 E-mail: [email protected] Accepted 29 July 2018 Abstract Calanoid copepods belonging to the family Diaptomidae occur commonly and abundantly in different types of freshwater environment. Based on morphological taxonomic key characters 48 diaptomid species belonging to 13 genera were reported from India. Taxonomic discrimination of many species of these genera is difficult due to their high morphological similarities and minute differences in key characters. In the present study two species of the genus, Neodiaptomus, N. meggiti and N. schmackeri from Andaman Islands were examined based on morphological and molecular characters which showed low variation in morphology and differences in their distributions. The morphological taxonomy of Copepoda with genetic analysis has shown complementing values in understanding the genetic variation and phylogeny of the contemporary populations. In this study, a molecular phylogenetic analysis of N. meggiti and N. schmackeri is performed on the basis of mitochondrial Cytochrome c oxidase subunit I (COI) gene. The mtDNA COI sequence of N. meggiti and N. -
Morfologia Externa Das Fases De Desenvolvimento De Diaptomus Corderoi Wright, 1936 (Crustacea, Copepoda, Calanoida)
MORFOLOGIA EXTERNA DAS FASES DE DESENVOLVIMENTO DE DIAPTOMUS CORDEROI WRIGHT, 1936 (CRUSTACEA, COPEPODA, CALANOIDA) MÁRCIA NAVARRO CIPÓLLI * Departamento de Zoologia — Inst. de Biociências USP. RESUMO Estudou-se e descreveu-se a morfología externa dos adultos, co~ pepóditos e larvas de Diaptomus corderoi Wright 1936, eopépode lím- nico plantónico do Brasil. Obtivemos sua criação em laboratório e calculamos o comprimento médio de cada estádio do desenvolvimento.. EXTERNAL MORPHOLOGY OF THE DEVELOPMENTAL STAGES OF DIAPTOMUS CORDEROI WRIGHT, 1936 (CRUSTACEA, COPEPODA, CALANOIDA) SUMMARY The external morphology of adults, copepodids and larvae of Diaptomus corderoi Wright 1936, a planktonic limnic copepod from Brazil, were studied and described. Its rearing in the laboratory was attempted. The average length of each developmental stage was calculated. INTRODUÇÃO Durante os anos de 1968 a 1970 foram feitas coletas mensais de plâncton em um lago artificial situado no “campus” da Cidade Uni versitária de São Paulo. Entre os animais coletados, encontrou-se uma única espécie de Copepoda Calanoida pertencente ao gênero Diap tomus, cuja criação foi tentada com a finalidade de se descrever suas fases de desenvolvimento. * Bolsista da Fundação de Amparo à Pesquisa do Estado de São Paulo. Inicialmente acreditou-se que o animal encontrado constituía uma espécie nova por não ter sido encontrada na literatura, nenhuma des crição de espécie de Diaptomus que apresentasse todas as característi cas deste. No entanto, assemelhava-se muito a Diaptomus corderoi Wright 1936 que foi coletado na Lagoa Santa situada a cerca de 50 km ao norte de Belo Horizonte, em 1935. Para confirmar ou não se era uma espécie nova, 10 fêmeas e 10 machos foram enviados ao Prof. -
Genetic Diversity and Population Structure of Two Freshwater
Diversity 2013, 5, 796-810; doi:10.3390/d5040796 OPEN ACCESS diversity ISSN 1424-2818 www.mdpi.com/journal/diversity Article Genetic Diversity and Population Structure of Two Freshwater Copepods (Copepoda: Diaptomidae), Neodiaptomus schmackeri (Poppe and Richard, 1892) and Mongolodiaptomus birulai (Rylov, 1922) from Taiwan Shuh-Sen Young 1,*, Shu-Chuan Lin 1,2 and Min-Yun Liu 3 1 Department of Applied Science, National Hsinchu University of Education, Hsinchu 300, Taiwan 2 Hsinchu Municipal Hsinchu Elementary School, 106, Shingshiue Street, Hsinchu 300, Taiwan; E-Mail: [email protected] 3 National Applied Research Laboratories, Taiwan Ocean Research Institute, 3F, 106, Hoping Road, Section 2, Taipei 106, Taiwan; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +886-521-3132-2712; Fax: +886-525-7178. Received: 22 September 2013; in revised form: 15 November 2013 / Accepted: 18 November 2013 / Published: 22 November 2013 Abstract: We used the mitochondria DNA COI (cytochrome c oxidase subunit I) sequence as a genetic marker to analyze the population genetic structure of two species of freshwater copepods, Neodiaptomus schmackeri (Poppe and Richard, 1892) and Mongolodiaptomus birulai (Rylov, 1922) from Taiwan. Four populations with 51 individuals of N. schmackeri and five populations with 65 individuals of M. birulai were included. We compared the nucleotide sequences of a 635-bp fragment of the COI gene of N. schmackeri and a 655-bp fragment of the COI gene of M. birulai, and eight and 14 unique haplotypes were recorded, respectively. Tseng-Wen reservoir and Wu-San-Tao reservoir are linked by a channel, and the gene flow between them was unrestricted (Fst = 0.058; Nm = 4.04; Fst, population differentiation parameter; Nm, the number of succesfull migrants per generation); the gene flow between all other populations of both species was restricted (Fst = 0.4–0.99; Nm = 0–0.37). -
Speciation Patterns and Processes in the Zooplankton of the Ancient Lakes of Sulawesi Island, Indonesia James J
Speciation patterns and processes in the zooplankton of the ancient lakes of Sulawesi Island, Indonesia James J. Vaillant1, Dan G. Bock2, G. Douglas Haffner1 & Melania E. Cristescu1,3 1Great Lakes Institute for Environmental Research, University of Windsor, Windsor, Ontario N9B 3P4, Canada 2Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada 3Department of Biology, McGill University, Montreal, Quebec H3A 1B1, Canada Keywords Abstract Ancient lakes, copepoda, Malili lakes, plankton, population structure. Although studies of ancient lake fauna have provided important insights about speciation patterns and processes of organisms in heterogeneous benthic envi- Correspondence ronments, evolutionary forces responsible for speciation in the relatively James J. Vaillant, Great Lakes Institute for homogenous planktonic environment remain largely unexplored. In this study, Environmental Research, University of we investigate possible mechanisms of speciation in zooplankton using the Windsor, Windsor, ON N9B 3P4, Canada. freshwater diaptomids of the ancient lakes of Sulawesi, Indonesia, as a model Tel: 519-253-3000; Fax: 519-971-3616; system. We integrate phylogenetic and population genetic analyses of mito- E-mail: [email protected] chondrial and nuclear genes with morphological and genome size data. Overall, Funding Information our results support the conclusion that colonization order and local adaptation This research was funded by PT Vale are dominant at the large, island scale, whereas at local and intralacustrine Indonesia, NSERC Discovery grants to M. E. scales, speciation processes are regulated by gene flow among genetically differ- Cristescu and G. D. Haffner, and by the entiated and locally adapted populations. In the Malili lakes, the diaptomid NSERC CREATE training program in Aquatic populations are homogenous at nuclear loci, but show two highly divergent Ecosystem Health. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
The Role of External Factors in the Variability of the Structure of the Zooplankton Community of Small Lakes (South-East Kazakhstan)
water Article The Role of External Factors in the Variability of the Structure of the Zooplankton Community of Small Lakes (South-East Kazakhstan) Moldir Aubakirova 1,2,*, Elena Krupa 3 , Zhanara Mazhibayeva 2, Kuanysh Isbekov 2 and Saule Assylbekova 2 1 Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan 2 Fisheries Research and Production Center, Almaty 050016, Kazakhstan; mazhibayeva@fishrpc.kz (Z.M.); isbekov@fishrpc.kz (K.I.); assylbekova@fishrpc.kz (S.A.) 3 Institute of Zoology, Almaty 050060, Kazakhstan; [email protected] * Correspondence: [email protected]; Tel.: +7-27-3831715 Abstract: The variability of hydrochemical parameters, the heterogeneity of the habitat, and a low level of anthropogenic impact, create the premises for conserving the high biodiversity of aquatic communities of small water bodies. The study of small water bodies contributes to understanding aquatic organisms’ adaptation to sharp fluctuations in external factors. Studies of biological com- munities’ response to fluctuations in external factors can be used for bioindication of the ecological state of small water bodies. In this regard, the purpose of the research is to study the structure of zooplankton of small lakes in South-East Kazakhstan in connection with various physicochemical parameters to understand the role of biological variables in assessing the ecological state of aquatic Citation: Aubakirova, M.; Krupa, E.; ecosystems. According to hydrochemical data in summer 2019, the nutrient content was relatively Mazhibayeva, Z.; Isbekov, K.; high in all studied lakes. A total of 74 species were recorded in phytoplankton. The phytoplankton Assylbekova, S. The Role of External abundance varied significantly, from 8.5 × 107 to 2.71667 × 109 cells/m3, with a biomass from 0.4 Factors in the Variability of the to 15.81 g/m3. -
Biodiversity and Ecosystem Management in the Iraqi Marshlands
Biodiversity and Ecosystem Management in the Iraqi Marshlands Screening Study on Potential World Heritage Nomination Tobias Garstecki and Zuhair Amr IUCN REGIONAL OFFICE FOR WEST ASIA 1 The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily reflect those of IUCN. Published by: IUCN ROWA, Jordan Copyright: © 2011 International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holder provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holder. Citation: Garstecki, T. and Amr Z. (2011). Biodiversity and Ecosystem Management in the Iraqi Marshlands – Screening Study on Potential World Heritage Nomination. Amman, Jordan: IUCN. ISBN: 978-2-8317-1353-3 Design by: Tobias Garstecki Available from: IUCN, International Union for Conservation of Nature Regional Office for West Asia (ROWA) Um Uthaina, Tohama Str. No. 6 P.O. Box 942230 Amman 11194 Jordan Tel +962 6 5546912/3/4 Fax +962 6 5546915 [email protected] www.iucn.org/westasia 2 Table of Contents 1 Executive -
Instituto Nacional De Pesquisas Da Amazônia - Inpa Programa De Pós-Graduação Do Inpa Programa De Pós-Graduação Em Biologia De Água Doce E Pesca Interior
INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA - INPA PROGRAMA DE PÓS-GRADUAÇÃO DO INPA PROGRAMA DE PÓS-GRADUAÇÃO EM BIOLOGIA DE ÁGUA DOCE E PESCA INTERIOR FILOGENIA E BIOGEOGRAFIA DOS DIAPTOMINAE NEOTROPICAIS DANIEL PREVIATTELLI Manaus, Amazonas Septembro/2010 Livros Grátis http://www.livrosgratis.com.br Milhares de livros grátis para download. INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA - INPA PROGRAMA DE PÓS-GRADUAÇÃO DO INPA PROGRAMA DE PÓS-GRADUAÇÃO EM BIOLOGIA DE ÁGUA DOCE E PESCA INTERIOR FILOGENIA E BIOGEOGRAFIA DOS DIAPTOMINAE NEOTROPICAIS DANIEL PREVIATTELLI Orientador: Edinaldo Nelson dos Santos-Silva Tese apresentada para como parte dos requisitos para a obtenção do títulode Doutor em Biologia de Água Doce e Pesca Interior. Manaus, Amazonas Septembro/2010 ___________________________________________________________________ Financiamento: CAPES; CNPq. I II III Ficha catalográfica DANIEL PREVIATTELLI Filogenia e Biogeografia dos Diaptominae Neotropicais. (200) p.: 100 il. Tese – INPA. 1. Taxonomia de grupos recentes 2. Calanoida 3. Delta 4. Sistemática filogenética 5. Região Neotropical CDD19.ed. Sinopse Foi estudada a filogenia e a biogeografia dos Diaptomidae (Crustacea: Copepoda) na região Neotropical. A relação de parentesco entre as espécies foi proposta pela primeira vez para esse grupo e os limites de distribuição determinados com base em coletas recentes, recuperação e consulta de material e revisão da literatura. As implicações para a história evolutiva o grupo foram discutidas com base na comparação dos padrões de distribuição com a respectiva topologia filogenética encontrada. Palavras-chave: Filogenia, Copepoda, análise de trilha, pan-biogeografia. IV Agradecimentos Agradeço ao curso BADPI, na pessoa da Dra. Angela Maria Bezerra Varella. Também agradeço ao Conselho Nacional de Desenvolvimento Científico e Tecnológico – CNPq, e Coordenação de Aperfeiçoamento de Pessoal de Nível Ensino Superior - CAPES pelo finenciamento. -
Species Richness and Taxonomic Distinctness of Zooplankton in Ponds and Small Lakes from Albania and North Macedonia: the Role of Bioclimatic Factors
water Article Species Richness and Taxonomic Distinctness of Zooplankton in Ponds and Small Lakes from Albania and North Macedonia: The Role of Bioclimatic Factors Giorgio Mancinelli 1,2,3, Sotir Mali 4 and Genuario Belmonte 1,5,* 1 CoNISMa, Consorzio Nazionale Interuniversitario per le Scienze del Mare, 00196 Roma, Italy; [email protected] 2 Laboratory of Ecology, Department of Biological and Environmental Sciences and Technologies (DiSTeBA), University of Salento, 73100 Lecce, Italy 3 National Research Council (CNR), Institute of Biological Resources and Marine Biotechnologies (IRBIM), 08040 Lesina, Italy 4 Department of Biology, Faculty of Natural Sciences, “Aleksandër Xhuvani” University, 3001 Elbasan, Albania; [email protected] 5 Laboratory of Zoogegraphy and Fauna, Department of Biological and Environmental Sciences and Technologies (DiSTeBA), University of Salento, 73100 Lecce, Italy * Correspondence: [email protected] Received: 13 October 2019; Accepted: 11 November 2019; Published: 14 November 2019 Abstract: Resolving the contribution to biodiversity patterns of regional-scale environmental drivers is, to date, essential in the implementation of effective conservation strategies. Here, we assessed the species richness S and taxonomic distinctness D+ (used a proxy of phylogenetic diversity) of crustacean zooplankton assemblages from 40 ponds and small lakes located in Albania and North Macedonia and tested whether they could be predicted by waterbodies’ landscape characteristics (area, perimeter, and altitude), together with local bioclimatic conditions that were derived from Wordclim and MODIS databases. The results showed that a minimum adequate model, including the positive effects of non-arboreal vegetation cover and temperature seasonality, together with the negative influence of the mean temperature of the wettest quarter, effectively predicted assemblages’ variation in species richness. -
Revisiting Elton's Copepods: Lake Construction Has Altered The
Aquatic Invasions (2017) Volume 12, Issue 2: 159–166 Open Access DOI: https://doi.org/10.3391/ai.2017.12.2.04 © 2017 The Author(s). Journal compilation © 2017 REABIC Research Article Revisiting Elton’s copepods: lake construction has altered the distribution and composition of calanoid copepods in the British Isles Ian C. Duggan1,* and Richard J. Payne2 1Environmental Research Institute, School of Science, The University of Waikato, Hamilton, New Zealand 2Environment, University of York, Heslington, York, United Kingdom Author e-mails: [email protected] (ICD), [email protected] (RJP) *Corresponding author Received: 2 December 2016 / Accepted: 13 March 2017 / Published online: 3 April 2017 Handling editor: Vadim E. Panov Abstract It is now widely accepted that the construction of new lakes, ponds and reservoirs facilitates the invasion of non-indigenous aquatic species, due largely to low biotic resistance from native communities. The role played by constructed waters appears to be a particularly frequent feature of zooplankton invasions. Charles Elton, in his classic 1927 book “Animal Ecology”, noted that the estuarine calanoid copepod Eurytemora velox had invaded constructed inland waters in Britain and highlighted the lack of a key species, Eudiaptomus gracilis, in allowing its establishment. At the time, Elton’s observations were dismissed and his findings largely consigned to obscurity. Using occurrence records gathered since this time and current knowledge of calanoid copepod ecology and invasion biology, we re-examined the distributions of three species of freshwater calanoid copepods in the British Isles to: 1) determine the legacy of lake and pond construction on their distributions, and 2) reassess the conclusions made by Elton in light of this knowledge. -
Major Patterns of Body Size Variation Within Arthropod Species: Exploring the Impact of Habitat, Temperature, Latitude, Seasonality and Altitude
Major Patterns of Body Size Variation within Arthropod Species: Exploring the Impact of Habitat, Temperature, Latitude, Seasonality and Altitude Submitted in partial fulfilment of the requirements of the Degree of Doctor of Philosophy Curtis Robert Horne June 2017 I, Curtis Robert Horne, confirm that the research included within this thesis is my own work or that where it has been carried out in collaboration with, or supported by others, that this is duly acknowledged below and my contribution indicated. Previously published material is also acknowledged below. I attest that I have exercised reasonable care to ensure that the work is original, and does not to the best of my knowledge break any UK law, infringe any third party’s copyright or other Intellectual Property Right, or contain any confidential material. I accept that the College has the right to use plagiarism detection software to check the electronic version of the thesis. I confirm that this thesis has not been previously submitted for the award of a degree by this or any other university. The copyright of this thesis rests with the author and no quotation from it or information derived from it may be published without the prior written consent of the author. Signature: Date: 2nd June 2017 i Details of collaboration and publications Author contributions and additional collaborators are listed below for each chapter, as well as details of publications where applicable. This work was supported by the Natural Environment Research Council (NE/L501797/1). I use the term ‘we’ throughout the thesis to acknowledge the contribution of others.