Extracellular Thermo-Alkalophilic Proteolytic Activities of the Bacillus Aerophilus: Detection and Preliminary Characterization
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Sporulation Evolution and Specialization in Bacillus
bioRxiv preprint doi: https://doi.org/10.1101/473793; this version posted March 11, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Research article From root to tips: sporulation evolution and specialization in Bacillus subtilis and the intestinal pathogen Clostridioides difficile Paula Ramos-Silva1*, Mónica Serrano2, Adriano O. Henriques2 1Instituto Gulbenkian de Ciência, Oeiras, Portugal 2Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Oeiras, Portugal *Corresponding author: Present address: Naturalis Biodiversity Center, Marine Biodiversity, Leiden, The Netherlands Phone: 0031 717519283 Email: [email protected] (Paula Ramos-Silva) Running title: Sporulation from root to tips Keywords: sporulation, bacterial genome evolution, horizontal gene transfer, taxon- specific genes, Bacillus subtilis, Clostridioides difficile 1 bioRxiv preprint doi: https://doi.org/10.1101/473793; this version posted March 11, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Bacteria of the Firmicutes phylum are able to enter a developmental pathway that culminates with the formation of a highly resistant, dormant spore. Spores allow environmental persistence, dissemination and for pathogens, are infection vehicles. In both the model Bacillus subtilis, an aerobic species, and in the intestinal pathogen Clostridioides difficile, an obligate anaerobe, sporulation mobilizes hundreds of genes. -
Bioprospection of Cellulolytic and Lipolytic South Atlantic Deep-Sea Bacteria
Electronic Journal of Biotechnology ISSN: 0717-3458 http://www.ejbiotechnology.info DOI: 10.2225/vol15-issue5-fulltext-17 RESEARCH ARTICLE Bioprospection of cellulolytic and lipolytic South Atlantic deep-sea bacteria Estácio Jussie Odisi1 · Marcela Bruschi Silvestrin1 · Rodrigo Yoji Uwamori Takahashi1 · Marcus Adonai Castro da Silva1 · André Oliveira de Souza Lima1 1 Universidade do Vale do Itajaí, Centro de Ciências Tecnológicas da Terra e do Mar, Itajaí, SC, Brazil Corresponding author: [email protected] Received June 6, 2012 / September 3, 2012 Published online: September 15, 2012 © 2012 by Pontificia Universidad Católica de Valparaíso, Chile Abstract Background: Cellulases and lipases have broad industrial application, which calls for an urgent exploration of microorganisms from extreme environments as valuable source of commercial enzyme. In this context, the present work describes the bioprospection and identification of deep-sea bacteria that produce cellulases and lipases, as well their optimal temperature of activity. Results: The first step of this study was the screening of cellulolytic and lipolytic deep-sea bacteria from sediment and water column, which was conducted with substrates linked with 4-Methylumbelliferyl. Among the 161 strains evaluated, 40 were cellulolytic, 23 were lipolytic and 5 exhibited both activities. Cellulolytic and lipolytic bacteria are more common in sediment than at the water column. Based on the ability to produce cellulases and lipases three isolates were selected and identified (16S rRNA sequencing) as Bacillus stratosphericus, B. aerophilus and B. pumilus. Lipases of strain B. aerophilus LAMA 582 exhibited activity at a wide temperature range (4º to 37ºC) and include psychrophilic behaviour. Strain Bacillus stratosphericus LAMA 585 can growth in a rich (Luria Bertani) and minimal (Marine Minimal) medium, and does not need an inducer to produce its mesophilic cellulases and lipases. -
WO 2016/086210 Al 2 June 2016 (02.06.2016) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2016/086210 Al 2 June 2016 (02.06.2016) P O P C T (51) International Patent Classification: (74) Agents: MELLO, Jill, Ann et al; McCarter & English, A61P 1/00 (2006.01) A61P 37/00 (2006.01) LLP, 265 Franklin Street, Boston, MA 021 10 (US). A61P 29/00 (2006.01) A61K 35/74 (2015.01) (81) Designated States (unless otherwise indicated, for every (21) International Application Number: kind of national protection available): AE, AG, AL, AM, PCT/US20 15/0628 10 AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, (22) International Filing Date: DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, 25 November 2015 (25.1 1.2015) HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, (25) Filing Language: English KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, (26) Publication Language: English PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, (30) Priority Data: SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, 62/084,537 25 November 2014 (25. 11.2014) US TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. 62/084,536 25 November 2014 (25. -
Construction of Probe of the Plant Growth-Promoting Bacteria Bacillus Subtilis Useful for fluorescence in Situ Hybridization
Journal of Microbiological Methods 128 (2016) 125–129 Contents lists available at ScienceDirect Journal of Microbiological Methods journal homepage: www.elsevier.com/locate/jmicmeth Construction of probe of the plant growth-promoting bacteria Bacillus subtilis useful for fluorescence in situ hybridization Luisa F. Posada a,JavierC.Alvarezb, Chia-Hui Hu e, Luz E. de-Bashan c,d,e, Yoav Bashan c,d,e,⁎ a Department of Process Engineering, Cra 49 #7 sur-50, Universidad EAFIT, Medellín, Colombia b Departament of Biological Sciences, Cra 49 #7 sur-50, Universidad EAFIT, Medellín, Colombia c The Bashan Institute of Science, 1730 Post Oak Ct., AL 36830, USA d Environmental Microbiology Group, Northwestern Center for Biological Research (CIBNOR), Av. IPN 195, La Paz, B.C.S. 23096, Mexico e Department of Entomology and Plant Pathology, Auburn University, 301 Funchess Hall, Auburn, AL 36849, USA article info abstract Article history: Strains of Bacillus subtilis are plant growth-promoting bacteria (PGPB) of many crops and are used as inoculants. Received 13 April 2016 PGPB colonization is an important trait for success of a PGPB on plants. A specific probe, based on the 16 s rRNA of Received in revised form 30 May 2016 Bacillus subtilis, was designed and evaluated to distinguishing, by fluorescence in situ hybridization (FISH), be- Accepted 31 May 2016 tween this species and the closely related Bacillus amyloliquefaciens. The selected target for the probe was be- Available online 2 June 2016 tween nucleotides 465 and 483 of the gene, where three different nucleotides can be identified. The designed Keywords: probe successfully hybridized with several strains of Bacillus subtilis, but failed to hybridize not only with Bacillus subtilis B. -
Xylanolytic Bacillus Species for Xylooligosaccharides Production: a Critical Review Rozina Rashid1,2 and Muhammad Sohail1*
Rashid and Sohail Bioresour. Bioprocess. (2021) 8:16 https://doi.org/10.1186/s40643-021-00369-3 REVIEW Open Access Xylanolytic Bacillus species for xylooligosaccharides production: a critical review Rozina Rashid1,2 and Muhammad Sohail1* Abstract The capacity of diferent Bacillus species to produce large amounts of extracellular enzymes and ability to ferment various substrates at a wide range of pH and temperature has placed them among the most promising hosts for the industrial production of many improved and novel products. The global interest in prebiotics, for example, xylooli- gosaccharides (XOs) is ever increasing, rousing the quest for various forms with expanded productivity. This article provides an overview of xylanase producing bacilli, with more emphasis on their capacity to be used in the produc- tion of the XOs, followed by the purifcation strategies, characteristics and application of XOs from bacilli. The large- scale production of XOs is carried out from a number of xylan-rich lignocellulosic materials by chemical or enzymatic hydrolysis followed by purifcation through chromatography, vacuum evaporation, solvent extraction or membrane separation methods. Utilization of XOs in the production of functional products as food ingredients brings well-being to individuals by improving defense system and eliminating pathogens. In addition to the efects related to health, a variety of other biological impacts have also been discussed. Keywords: Bacillus, Prebiotics, Xylanase, Xylooligosaccharides Introduction (Marín-Manzano et al. 2013), pectic oligosaccharides Prebiotics are non-degradable ingredients or food sup- (POs) (Míguez et al. 2016) cellooligosaccharides (COs) plements that can signifcantly impact the physiology of (Karnaouri et al. 2019) and xylooligosaccharides (XOs) entire body and improve the health of host by specif- (Mäkeläinen et al. -
Plant Growth Promoting Bacteria: Biodiversity and Multifunctional Attributes for Sustainable Agriculture
Review Article Adv Biotech & Micro - August Volume 5 Issue 5 2017 Copyright © All rights are reserved by Ajar Nath Yadav DOI: 10.19080/AIBM.2017.05.555671 Plant Growth Promoting Bacteria: Biodiversity and Multifunctional Attributes for Sustainable Agriculture Ajar Nath Yadav1*, Priyanka Verma2, Bhanumati Singh3, Vinay Singh Chauahan3, Archna Suman4 and Anil Kumar Saxena5 1Department of Biotechnology, Akal College of Agriculture, Eternal University, India 2Department of Microbiology, Akal College of Basic Science, Eternal University, India 3Department of Biotechnology, Bundelkhand University, India 4Division of Microbiology, Indian Agricultural Research Institute, India 5ICAR-National Bureau of Agriculturally Important Microorganisms, India Submission: May 24, 2017; Published: August 24, 2017 *Corresponding author: Ajar Nath Yadav, Department of Biotechnology, Akal College of Agriculture, Eternal University, India, Tel: +91- 9882545085; Email: Ajar Nath Yadav and Priyanka Verma contributed equally to the present work. Abstract The use of plant growth promoting bacteria may prove useful in developing strategies to facilitate plant growth under normal as well as diverse abiotic stress conditions. The application of microbes with the aim of improving nutrients availability for plants is an important practice and necessary for sustainable agriculture. During the past couple of decades, the use of microbial inoculants for sustainable agriculture has to inoculation with plant growth promoting (PGP) microbes have been repeatedly reported. The actual biodiversity of PGP microbes belong to differentincreased groups tremendously including in Actinobacteria, various parts of Bacteroidetes, the world. Significant Balneolaeota increases Firmicutes, in growth Proteobacteria and yield of and agronomically Spirochaetes. important PGP bacteria crops are in responsenaturally productionoccurring soil of bacteriaammonia, that hydrogen aggressively cyanide, colonize siderophore plant roots and and biocontrol benefit plants against by different providing plant growth pathogens. -
Harnessing Bacterial Endophytes for Promotion of Plant Growth and Biotechnological Applications: an Overview
plants Review Harnessing Bacterial Endophytes for Promotion of Plant Growth and Biotechnological Applications: An Overview Ahmed M. Eid 1 , Amr Fouda 1,* , Mohamed Ali Abdel-Rahman 1 , Salem S. Salem 1 , Albaraa Elsaied 1, Ralf Oelmüller 2, Mohamed Hijri 3,4 , Arnab Bhowmik 5 , Amr Elkelish 2,6 and Saad El-Din Hassan 1,* 1 Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; [email protected] (A.M.E.); [email protected] (M.A.A.-R.); [email protected] (S.S.S.); [email protected] (A.E.) 2 Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University, 07743 Jena, Germany; [email protected] (R.O.); [email protected] (A.E.) 3 Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC 22001, Canada; [email protected] 4 African Genome Center, Mohammed VI Polytechnic University (UM6P), 43150 Ben Guerir, Morocco 5 Department of Natural Resources and Environmental Design, North Carolina A&T State University, Greensboro, NC 27411, USA; [email protected] 6 Botany Department, Faculty of Science, Suez Canal University, Ismailia 41522, Egypt * Correspondence: [email protected] (A.F.); [email protected] (S.E.-D.H.); Tel.: +20-1113-351-244 (A.F.); +20-1023-884-804 (S.E.-D.H.) Abstract: Endophytic bacteria colonize plants and live inside them for part of or throughout their Citation: Eid, A.M.; Fouda, A.; life without causing any harm or disease to their hosts. -
Microbial Distributions and Survival in the Troposphere and Stratosphere
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2017 Microbial Distributions and Survival in the Troposphere and Stratosphere Noelle Celeste Bryan Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Life Sciences Commons Recommended Citation Bryan, Noelle Celeste, "Microbial Distributions and Survival in the Troposphere and Stratosphere" (2017). LSU Doctoral Dissertations. 4384. https://digitalcommons.lsu.edu/gradschool_dissertations/4384 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. MICROBIAL DISTRIBUTION AND SURVIVIAL IN THE TROPOSPHERE AND STRATOSPHERE A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences by Noelle Celeste Bryan B.A., University of Louisiana at Monroe, 2003 August 2017 ACKNOWLEDGEMENTS The success of this project can be attributed to the mentorship and expertise of T. Gregory Guzik, who led the ballooning and payload design team. The guidance he provided on technical training, project management skills, and his insistence on rigorous science will benefit all my future endeavors. Additionally, this work was made possible because my advisor, Brent Christner, granted the opportunity for someone to pursue his or her passion for microbial ecology, despite a lack of previous research experience. -
Combination of Genetic Tools to Discern Bacillus Species Isolated from Hot Springs in South Africa
Vol. 14(8), pp. 447-464, August, 2020 DOI: 10.5897/AJMR2019.9066 Article Number: 94619F264699 ISSN: 1996-0808 Copyright ©2020 Author(s) retain the copyright of this article African Journal of Microbiology Research http://www.academicjournals.org/AJMR Full Length Research Paper Combination of genetic tools to discern Bacillus species isolated from hot springs in South Africa Jocelyn Leonie Jardine1 and Eunice Ubomba-Jaswa1,2* 1Department of Biotechnology, University of Johannesburg, 37 Nind Street, Doornfontein, Gauteng, South Africa. 2Water Research Commission, Lynnwood Bridge Office Park, Bloukrans Building, 4 Daventry Street, Lynnwood Manor, Pretoria, South Africa. Received 2 February, 2019, Accepted 2 January, 2020 Using phylogenetic analysis of the 16S rRNA gene 43 Gram-positive, spore-forming bacteria of the phylum Firmicutes were isolated, cultured and identified from five hot water springs in South Africa. Thirty-nine isolates belonged to the family Bacillaceae, genus Bacillus (n = 31) and genus Anoxybacillus (n = 8), while four isolates belonged to the family Paenibacillaceae, genus Brevibacillus. The majority of isolates fell into the Bacillus Bergey’s Group A together with Bacillus subtilis and Bacillus licheniformis. One isolate matched Bacillus panaciterrae which has not previously been described as a hot-spring isolate. Three unknown isolates from this study (BLAST <95% match) and three “uncultured Bacillus” clones of isolates from hot springs in India, China and Indonesia listed in NCBI Genbank, were included in the analysis. When bioinformatic tools: Basic Local Alignment Search Tool (BLAST), in silico amplified rDNA restriction analysis (ARDRA), guanine- cytosine (GC) percentage and phylogenetic analysis are used in combination, but not independently, differentiation between the complex Bacillus and closely related species was possible. -
Prevalence of Plant Beneficial and Human Pathogenic Bacteria Isolated from Salad Vegetables in India Angamuthu Nithya and Subramanian Babu*
Nithya and Babu BMC Microbiology (2017) 17:64 DOI 10.1186/s12866-017-0974-x RESEARCH ARTICLE Open Access Prevalence of plant beneficial and human pathogenic bacteria isolated from salad vegetables in India Angamuthu Nithya and Subramanian Babu* Abstract Background: The study aimed at enumerating, identifying and categorizing the endophytic cultivable bacterial community in selected salad vegetables (carrot, cucumber, tomato and onion). Vegetable samples were collected from markets of two vegetable hot spot growing areas, during two different crop harvest seasons. Crude and diluted vegetable extracts were plated and the population of endophytic bacteria was assessed based on morphologically distinguishable colonies. The bacterial isolates were identified by growth in selective media, biochemical tests and 16S rRNA gene sequencing. Results: The endophytic population was found to be comparably higher in cucumber and tomato in both of the sampling locations, whereas lower in carrot and onion. Bacterial isolates belonged to 5 classes covering 46 distinct species belonging to 19 genera. Human opportunistic pathogens were predominant in carrot and onion, whereas plant beneficial bacteria dominated in cucumber and tomato. Out of the 104 isolates, 16.25% are human pathogens and 26.5% are human opportunistic pathogens. Conclusions: Existence of a high population of plant beneficial bacteria was found to have suppressed the population of plant and human pathogens. There is a greater potential to study the native endophytic plant beneficial bacteria -
Taxonomic Grouping of Alkaline Protease Producing Bacilli
Polish Journal of Microbiology 2017, Vol. 66, No 1, 39–56 ORIGINAL PAPER A Comparative Study: Taxonomic Grouping of Alkaline Protease Producing Bacilli NILGUN TEKIN1, ARZU COLERI CIHAN2, BASAR KARACA2 and CUMHUR COKMUS3* 1 Biotechnology Institute, Ankara University, Besevler, Ankara, Turkey 2 Faculty of Science, Biology Department, Ankara University, Tandogan, Ankara, Turkey 3 Konya Food and Agriculture University, Dede Korkut Mahallesi, Beyşehir, Meram, Konya, Turkey Submitted 5 November 2015, revised 17 February 2016, accepted 19 February 2016 Abstract Alkaline proteases have biotechnological importance due to their activity and stability at alkaline pH. 56 bacteria, capable of growing under alkaline conditions were isolated and their alkaline protease activities were carried out at different parameters to determine their optimum alkaline protease production conditions. Seven isolates were showed higher alkaline protease production capacity than the reference strains. The highest alkaline protease producing isolates (103125 U/g), E114 and C265, were identified as Bacillus licheniformis with 99.4% and Bacillus mojavensis 99.8% based on 16S rRNA gene sequence similarities, respectively. Interestingly, the isolates identified as Bacillus safensis were also found to be high alkaline protease producing strains. Genotypic characterizations of the isolates were also determined by using a wide range of molecular techniques (ARDRA, ITS-PCR, (GTG)5-PCR, BOX-PCR). These different techniques allowed us to differentiate the alkaliphilic isolates and the results were in concurrence with phylogenetic analyses of the 16S rRNA genes. While ITS-PCR provided the highest correlation with 16S rRNA groups, (GTG)5-PCR showed the highest differentiation at species and intra-species level. In this study, each of the biotechnologically valuable alkaline protease producing isolates was grouped into their taxonomic positions with multi-genotypic analyses. -
Report on 24 Unrecorded Bacterial Species of Korea Belonging to the Phylum Firmicutes
Journal of Species Research 4(2):127136, 2015 Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes JiHye Han1, Yochan Joung1, TaeSu Kim1, JinWoo Bae2, ChangJun Cha3, Jongsik Chun4, WanTaek Im5, Kwang Yeop Jahng6, Che Ok Jeon7, Kiseong Joh8, Chi Nam Seong9, JungHoon Yoon10, JangCheon Cho11 and Seung Bum Kim1,* 1Department of Microbiology and Molecular Biology, Chungnam National University, Daejeon 305-764, Korea 2Department of Biology, Kyung Hee University, Seoul 130-701, Korea 3Department of Biotechnology, Chung-Ang University, Anseong 456-756, Korea 4School of Biological Sciences, Seoul National University, Seoul 151-742, Korea 5Department of Biotechnology, Hankyong National University, Anseong 456-749, Korea 6Department of Life Sciences, Chonbuk National University, Jeonju 561-756, Korea 7Department of Life Science, Chung-Ang University, Seoul 156-756, Korea 8Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 449-791, Korea 9Department of Biology, Sunchon National University, Suncheon 540-950, Korea 10Department of Food Science and Biotechnology, Sungkyunkwan University, Suwon 440-746, Korea 11Department of Biological Sciences, Inha University, Incheon 402-751, Korea *Correspondent: [email protected] As an outcome of the study on the bacterial species diversity in Korea, we report 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes. The unrecorded species excavated through this study were assigned to 12 different genera of 7 families, namely Bacillus, Halobacillus, Lysinibacillus and Thalassobacillus of Bacillaceae, Brevibacillus and Paenibacillus of Paenibacillaceae, Viridibacillus of Planococcaceae, Salinicoccus and Staphylococcus of Staphylococcaceae, Enterococcus of Enteroco- ccaceae, Lactobacillus of Lactobacillaceae, and Lactococcus of Streptococcaceae, respectively.