Developing a Multiple Spatial Scale Model to Predict the Distribution of Freshwater Mussel Assemblages In
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Gene Family Amplification Facilitates Adaptation in Freshwater Unionid
Gene family amplification facilitates adaptation in freshwater unionid bivalve Megalonaias nervosa Rebekah L. Rogers1∗, Stephanie L. Grizzard1;2, James E. Titus-McQuillan1, Katherine Bockrath3;4 Sagar Patel1;5;6, John P. Wares3;7, Jeffrey T Garner8, Cathy C. Moore1 Author Affiliations: 1. Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC 2. Department of Biological Sciences, Old Dominion University, Norfolk, VA 3. Department of Genetics, University of Georgia, Athens, GA 4. U.S. Fish and Wildlife Service, Midwest Fisheries Center Whitney Genetics Lab, Onalaska, WI 5. Department of Biology, Saint Louis University, St. Louis, MO 6. Donald Danforth Plant Science Center, St. Louis, MO 7. Odum School of Ecology, University of Georgia, Athens, GA 8. Division of Wildlife and Freshwater Fisheries, Alabama Department of Conservation and Natural Resources, Florence, AL *Corresponding author: Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC. [email protected] Keywords: Unionidae, M. nervosa, Evolutionary genomics, gene family expansion, arXiv:2008.00131v2 [q-bio.GN] 16 Nov 2020 transposable element evolution, Cytochrome P450, Population genomics, reverse ecological genetics Short Title: Gene family expansion in Megalonaias nervosa 1 Abstract Freshwater unionid bivalves currently face severe anthropogenic challenges. Over 70% of species in the United States are threatened, endangered or extinct due to pollution, damming of waterways, and overfishing. These species are notable for their unusual life history strategy, parasite-host coevolution, and biparental mitochondria inheritance. Among this clade, the washboard mussel Megalonaias nervosa is one species that remains prevalent across the Southeastern United States, with robust population sizes. We have created a reference genome for M. -
Pages 99-108
Freshwater Mollusk Biology and Conservation 23:99–108, 2020 Ó Freshwater Mollusk Conservation Society 2020 REGULAR ARTICLE USE OF MORPHOMETRIC ANALYSES AND DNA BARCODING TO DISTINGUISH TRUNCILLA DONACIFORMIS AND TRUNCILLA TRUNCATA (BIVALVIA: UNIONIDAE) Tyler W. Beyett1, Kelly McNichols-O’Rourke2, Todd J. Morris2, and David T. Zanatta*1,3 1 Department of Biology, Central Michigan University, Mount Pleasant, MI 48859 2 Fisheries and Oceans Canada, Great Lakes Laboratory for Fisheries and Aquatic Sciences, 867 Lakeshore Rd. Burlington, ON L7S 1A1 Canada 3 Institute for Great Lakes Research, Central Michigan University, Mount Pleasant, MI 48859 ABSTRACT Closely related unionid species often overlap in shell shape and can be difficult to accurately identify in the field. Ambiguity in identification can have serious impacts on conservation efforts and population surveys of threatened and endangered species. Truncilla donaciformis and Truncilla truncata are sister species that overlap in their distributions and frequently co-occur in central North America. Because T. donaciformis is endangered in Canada and imperiled in some US jurisdictions, co-occurrence with the morphologically similar T. truncata means that misidentification could seriously impact status assessments and recovery efforts. The objectives of this study were to (1) establish species identifications of specimens using DNA barcoding (COI), (2) determine how well traditional morphometrics and geometric morphometrics accurately discriminate between the two species, and (3) determine the accuracy of field identifications relative to molecular and morphometric identifications. Truncilla specimens from four rivers in southern Ontario were photographed and visceral mass swabs were taken. Positive identifications of all specimens were obtained through DNA barcoding and comparison with sequences from GenBank. -
IN the KIAMICHI RIVER, OKLAHOMA PROJECTTITLE: Habitat Use and Reproductive Biology of Arkansia Whee/Eri (Mollusca: Unionidae) in the Kiamichi River, Oklahoma
W 2800.7 E56s No.E-12 1990/93 c.3 OKLAHOMA o HABITAT USE AND REPRODUCTIVE BIOLOGY OF ARKANSIA WHEELERI (MOLLUSCA: UNIONIDAE) IN THE KIAMICHI RIVER, OKLAHOMA PROJECTTITLE: Habitat use and reproductive biology of Arkansia whee/eri (Mollusca: Unionidae) in the Kiamichi River, Oklahoma. whee/eri is associated. In its optimal habitat, A. whee/eri is always rare: mean relative 2 abundance varies from 0.2 to 0.7% and the average density is 0.27 individuals/m • In addition, shell length data for live Amb/ema plicata, a dominant mussel species in the Kiamichi River, indicate reduced recruitment below Sardis Reservoir. Much of the Kiamichi River watershed remains forested and this probably accounts for the high diversity and general health of its mussel community in comparison to other nearby rivers. Program Narrative Objective To determine the distribution, abundance and reproductive biology of the freshwater mussel Arkansia whee/eri within different habitats in the Kiamichi River of Oklahoma. Job Procedures 1. Characterize microhabitats and determine the effects of impoundment. 2. Determine movement, growth, and survivorship of individuals. 3. Identify glochidia and fish host. 4. Examine impact of Sardis Reservoir on the populations. 5. Determine historic and current land use within the current range of Arkansia whee/eri in the Kiamichi River. A. Introduction Arkansia (syn. Arcidens) whee/eri, the Ouachita rock pocketbook, is a freshwater mussel. Originally named Arkansia whee/eri by Ortmann and Walker in 1912, Clarke (1981, 1985) recognized Arkansia as a subgenus of Arcidens. The species is considered by Clarke to be distinct. However, Turgeon et al (1988) have continued to use the binomial Arkansia whee/eri. -
Download BALMNH No 25 2007
••• 11111111 ••• ••• ... .... ... ••• ALABAMA MUSEUM of Natural History Bulletin 25 August 1, 2007 Systematics, Evolution and Biogeography of the Etheostoma simoterum Species Complex (Percidae: Subgenus Ulocentra) Distribution and Satus of Freshwater Mussels (Bivalvia Unionidae) of the Lower Coosa and Tallapoosa River Drainages in Alabama The Osteology of the Stonecat, Noturus flavus (Siluriformes: Ictaluridae), with Comparisons to Other Siluriforms 8 1 BULLETIN ALABAMA MUSEUM OF NATURAL mSTORY The scientific publication of the Alabama Museum of Natural History. Dr. Phillip Harris, Editor. BULLETIN AlABAMA MUSEUM OF NATURAL HISTORY is published by the Alabama Museum of Natural History, a unit of The University of Alabama. The BULLETIN succeeds its predecessor, the MUSEUM PAPERS, which was terminated in 1961 upon the transfer of the Museum to the University from its parent organiza tion, the Geological Survey of Alabama. The BULLETIN is devoted primarily to scholarship and research concerning the natural history of Alabama and the Southeast. It appears twice yearly in consecutively numbered issues. Communication concerning manuscripts, style, and editorial policy should be addressed to: Editor, BULLETIN AlABAMA MUSEUM OF NATURAL HISTORY, The University of Alabama, Box 870345, Tuscaloosa, Alabama 35487-0345; telephone (205) 348-1831 or [email protected]. Prospective authors should exam ine the Notice to Authors inside the back cover. Orders and requests for general information should be addressed to BULLETIN AlABAMA MUSEUM OF NATURAL HISTORY, at the above address or emailed to [email protected]. Yearly subscriptions (two issues) are $30.00 for individ uals, $50.00 for corporations and institutions. Numbers may be purchased individual ly. Payment should accompany orders and subscriptions and checks should be made out to "The University of Alabama." Library exchanges should be handled through: Exchange Librarian, The University of Alabama, Box 870266, Tuscaloosa, Alabama 35487-0340. -
Atlas of the Freshwater Mussels (Unionidae)
1 Atlas of the Freshwater Mussels (Unionidae) (Class Bivalvia: Order Unionoida) Recorded at the Old Woman Creek National Estuarine Research Reserve & State Nature Preserve, Ohio and surrounding watersheds by Robert A. Krebs Department of Biological, Geological and Environmental Sciences Cleveland State University Cleveland, Ohio, USA 44115 September 2015 (Revised from 2009) 2 Atlas of the Freshwater Mussels (Unionidae) (Class Bivalvia: Order Unionoida) Recorded at the Old Woman Creek National Estuarine Research Reserve & State Nature Preserve, Ohio, and surrounding watersheds Acknowledgements I thank Dr. David Klarer for providing the stimulus for this project and Kristin Arend for a thorough review of the present revision. The Old Woman Creek National Estuarine Research Reserve provided housing and some equipment for local surveys while research support was provided by a Research Experiences for Undergraduates award from NSF (DBI 0243878) to B. Michael Walton, by an NOAA fellowship (NA07NOS4200018), and by an EFFRD award from Cleveland State University. Numerous students were instrumental in different aspects of the surveys: Mark Lyons, Trevor Prescott, Erin Steiner, Cal Borden, Louie Rundo, and John Hook. Specimens were collected under Ohio Scientific Collecting Permits 194 (2006), 141 (2007), and 11-101 (2008). The Old Woman Creek National Estuarine Research Reserve in Ohio is part of the National Estuarine Research Reserve System (NERRS), established by section 315 of the Coastal Zone Management Act, as amended. Additional information on these preserves and programs is available from the Estuarine Reserves Division, Office for Coastal Management, National Oceanic and Atmospheric Administration, U. S. Department of Commerce, 1305 East West Highway, Silver Spring, MD 20910. -
Conservation Status Assessment and a New Method for Establishing Conservation Priorities for Freshwater Mussels
Received: 8 March 2018 Revised: 9 November 2019 Accepted: 17 December 2019 DOI: 10.1002/aqc.3298 RESEARCH ARTICLE Conservation status assessment and a new method for establishing conservation priorities for freshwater mussels (Bivalvia: Unionida) in the middle and lower reaches of the Yangtze River drainage Xiongjun Liu1,2 | Xue Yang3 | David T. Zanatta4 | Manuel Lopes-Lima5 | Arthur E. Bogan6 | Alexandra Zieritz7,8 | Shan Ouyang3 | Xiaoping Wu1,2,3 1Key Laboratory of Poyang Lake Environment and Resource Utilization, School of Resources Abstract Environmental and Chemical Engineering, 1. The freshwater mussel (Unionida) fauna of the Yangtze River is among the most Nanchang University, Nanchang, People's Republic of China diverse on Earth. In recent decades, human activities have caused habitat degra- 2School of Resources Environmental & dation in the river, and previous studies estimated that up to 80% of the mussel Chemical Engineering, Nanchang University, species in the Yangtze River are Threatened or Near Threatened with extinction. Nanchang, People's Republic of China 3School of Life Sciences, Nanchang University, However, a comprehensive and systematic evaluation of the conservation status Nanchang, People's Republic of China of this fauna has yet to be completed. 4 Central Michigan University, Institute for 2. This study evaluated the conservation status of the 69 recognized freshwater Great Lakes Research, Mount Pleasant, MI mussel species in the middle and lower reaches of the Yangtze River, using the 5CIBIO/InBIO – Research Center -
Native Unionoida Surveys, Distribution, and Metapopulation Dynamics in the Jordan River-Utah Lake Drainage, UT
Version 1.5 Native Unionoida Surveys, Distribution, and Metapopulation Dynamics in the Jordan River-Utah Lake Drainage, UT Report To: Wasatch Front Water Quality Council Salt Lake City, UT By: David C. Richards, Ph.D. OreoHelix Consulting Vineyard, UT 84058 email: [email protected] phone: 406.580.7816 May 26, 2017 Native Unionoida Surveys and Metapopulation Dynamics Jordan River-Utah Lake Drainage 1 One of the few remaining live adult Anodonta found lying on the surface of what was mostly comprised of thousands of invasive Asian clams, Corbicula, in Currant Creek, a former tributary to Utah Lake, August 2016. Summary North America supports the richest diversity of freshwater mollusks on the planet. Although the western USA is relatively mollusk depauperate, the one exception is the historically rich molluskan fauna of the Bonneville Basin area, including waters that enter terminal Great Salt Lake and in particular those waters in the Jordan River-Utah Lake drainage. These mollusk taxa serve vital ecosystem functions and are truly a Utah natural heritage. Unfortunately, freshwater mollusks are also the most imperiled animal groups in the world, including those found in UT. The distribution, status, and ecologies of Utah’s freshwater mussels are poorly known, despite this unique and irreplaceable natural heritage and their protection under the Clean Water Act. Very few mussel specific surveys have been conducted in UT which requires specialized training, survey methods, and identification. We conducted the most extensive and intensive survey of native mussels in the Jordan River-Utah Lake drainage to date from 2014 to 2016 using a combination of reconnaissance and qualitative mussel survey methods. -
The Hoosier- Shawnee Ecological Assessment Area
United States Department of Agriculture The Hoosier- Forest Service Shawnee Ecological North Central Assessment Research Station General Frank R. Thompson, III, Editor Technical Report NC-244 Thompson, Frank R., III, ed 2004. The Hoosier-Shawnee Ecological Assessment. Gen. Tech. Rep. NC-244. St. Paul, MN: U.S. Department of Agriculture, Forest Service, North Central Research Station. 267 p. This report is a scientific assessment of the characteristic composition, structure, and processes of ecosystems in the southern one-third of Illinois and Indiana and a small part of western Kentucky. It includes chapters on ecological sections and soils, water resources, forest, plants and communities, aquatic animals, terrestrial animals, forest diseases and pests, and exotic animals. The information presented provides a context for land and resource management planning on the Hoosier and Shawnee National Forests. ––––––––––––––––––––––––––– Key Words: crayfish, current conditions, communities, exotics, fish, forests, Hoosier National Forest, mussels, plants, Shawnee National Forest, soils, water resources, wildlife. Cover photograph: Camel Rock in Garden of the Gods Recreation Area, with Shawnee Hills and Garden of the Gods Wilderness in the back- ground, Shawnee National Forest, Illinois. Contents Preface....................................................................................................................... II North Central Research Station USDA Forest Service Acknowledgments ................................................................................................... -
Xerces Society's
Conserving the Gems of Our Waters Best Management Practices for Protecting Native Western Freshwater Mussels During Aquatic and Riparian Restoration, Construction, and Land Management Projects and Activities Emilie Blevins, Laura McMullen, Sarina Jepsen, Michele Blackburn, Aimée Code, and Scott Homan Black CONSERVING THE GEMS OF OUR WATERS Best Management Practices for Protecting Native Western Freshwater Mussels During Aquatic and Riparian Restoration, Construction, and Land Management Projects and Activities Emilie Blevins Laura McMullen Sarina Jepsen Michele Blackburn Aimée Code Scott Hoffman Black The Xerces Society for Invertebrate Conservation www.xerces.org The Xerces® Society for Invertebrate Conservation is a nonprot organization that protects wildlife through the conservation of invertebrates and their habitat. Established in 1971, the Society is at the forefront of invertebrate protection, harnessing the knowledge of scientists and the enthusiasm of citizens to implement conservation programs worldwide. The Society uses advocacy, education, and applied research to promote invertebrate conservation. The Xerces Society for Invertebrate Conservation 628 NE Broadway, Suite 200, Portland, OR 97232 Tel (855) 232-6639 Fax (503) 233-6794 www.xerces.org Regional oces from coast to coast. The Xerces Society is an equal opportunity employer and provider. Xerces® is a trademark registered in the U.S. Patent and Trademark Oce © 2018 by The Xerces Society for Invertebrate Conservation Primary Authors and Contributors The Xerces Society for Invertebrate Conservation: Emilie Blevins, Laura McMullen, Sarina Jepsen, Michele Blackburn, Aimée Code, and Scott Homan Black. Acknowledgements Funding for this report was provided by the Oregon Watershed Enhancement Board, The Nature Conservancy and Portland General Electric Salmon Habitat Fund, the Charlotte Martin Foundation, Meyer Memorial Trust, and Xerces Society members and supporters. -
Survey of Texas Hornshell Populations in Texas: Years
FINAL PERFORMANCE REPORT As Required by THE ENDANGERED SPECIES PROGRAM TEXAS Grant No. TX E-132-R-2 Endangered and Threatened Species Conservation Survey of Texas Hornshell Populations in Texas Prepared by: Drs. Lyubov Burlakova and Alexander Karatayev Carter Smith Executive Director Clayton Wolf Division Director, Wildlife 25 August 2014 FINAL REPORT STATE: ____Texas_______________ GRANT NUMBER: ___E – 132-R-2____ GRANT TITLE: Survey of Texas Hornshell Populations in Texas, Yr 2&3 REPORTING PERIOD: ____1 Sep 11 to 31 Aug 14 OBJECTIVE(S): To assess the current distribution of P. popeii in Texas; evaluate long-term changes in distribution range; locate and describe existing populations, and determine species’ habitat requirements. Segment Objectives: 1. Assess the current distribution of Popenaias popeii in Texas; 2. Evaluate long-term changes in distribution range; 3. Locate and describe existing populations, and (4) determine species’ habitat requirements. Significant Deviation: None. Summary Of Progress: Please see Attachment A. Location: Terrell, Maverick, Webb, and Val Verde counties, TX Cost: ___Costs were not available at time of this report.__ Prepared by: _Craig Farquhar_____________ Date: 25 Aug 2014 Approved by: ______________________________ Date:___ 25 Aug 2014 C. Craig Farquhar 2 ATTACHMENT A TEXAS PARKS AND WILDLIFE DEPARTMENT TRADITIONAL SECTION 6 Joint Project with New Mexico Department of Game and Fish FINAL PERFORMANCE REPORT State: Texas Project Number: 419446 Project Title: “Survey of Texas Hornshell Populations in Texas” Time period: February 3, 2012 - August 31, 2014 Full Contract Period: 3 February 2012 To: 31 August 2014 (with requested 12-month no-cost extension) Principal Investigators: Lyubov E. Burlakova, Alexander Y. -
Conservation of Freshwater Live-Bearing Fishes: Development
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 7-6-2018 Conservation of Freshwater Live-bearing Fishes: Development of Germplasm Repositories for Goodeids Yue Liu Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Aquaculture and Fisheries Commons, Biotechnology Commons, and the Cell Biology Commons Recommended Citation Liu, Yue, "Conservation of Freshwater Live-bearing Fishes: Development of Germplasm Repositories for Goodeids" (2018). LSU Doctoral Dissertations. 4675. https://digitalcommons.lsu.edu/gradschool_dissertations/4675 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. CONSERVATION OF FRESHWATER LIVE-BEARING FISHES: DEVELOPMENT OF GERMPLASM REPOSITORIES FOR GOODEIDS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The School of Renewable Natural Resources by Yue Liu B.S., Jiujiang University, 2010 M.Agric., Shanghai Ocean University, 2013 August 2018 For my maternal grandparents, Wenzhi Zhang and Xianrang Zhang, who raised me up in my childhood For my parents, who support me with all their love For Youjin and Jenna, who are the meaning of my life ii Acknowledgments I want to thank my advisor Dr. Terrence Tiersch, who has been the most important person in my PhD study. -
Distributional Surveys of Freshwater Bivalves in Texas: Progress Report for 1999
DISTRIBUTIONAL SURVEYS OF FRESHWATER BIVALVES IN TEXAS: PROGRESS REPORT FOR 1999 by Robert G. Howells MANAGEMENT DATA SERIES No. 170 2000 Texas Parks and Wildlife Inland Fisheries Division 4200 Smith School Road Austin, Texas 78744 ACKNOWLEDGMENTS Many biologists and technicians with Texas Parks and Wildlife's (TPWD) Inland Fisheries Research and Management offices assisted with surveys and collections of freshwater mussels. Pam Baker (Kerrville, Texas) assisted the HOH staff with collections on the Pecos River and the Rio Grande. Baldo Loya (Bentsen-Rio Grande Valley State Park, Mission, Texas) assisted with survey efforts in the Lower Rio Grande Valley. Volunteers also collected mussel survey data; these included: Marv Eisthen (Dallas, Texas) examined Lake Lewisville, Mike Hernandez and other Brazos River Authority staff members (Waco, Texas) examined a number of sites in the Central Brazos River drainage; A. Tucker Davis (Dallas, Texas) used SCUBA to survey sites near Dallas; Dan Warren and Charles Keith (Texas Natural Resources Conservation Commission, Abilene, Texas) examined a site on the Clear Fork of the Brazos River; Roe Davenport (San Antonio, Texas) examined sites the central and lower Brazos River and lower Rio Grande; Melba Sexton (Luling, Texas) reported on specimens found in the San Marcos River; Steve Ansley and other U.S. Geological Survey (Austin, Texas) personnel provided information on sites on the Rio Grande and also joined with TPWD to examine other areas in Big Bend; Sally Strong, Bernice Speer and Betsin Maxim