The Research Progress of Parmelioid Lichen and Identification Between Its Genus
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Diversidad Y Aspectos Microevolutivos En Cosimbiontes Liquénicos Microevolutive Aspects and Diversity in Lichen Co-Symbionts
UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE FARMACIA Departamento de Biología Vegetal II TESIS DOCTORAL Diversidad y aspectos microevolutivos en cosimbiontes liquénicos Microevolutive aspects and diversity in lichen co-symbionts MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR David Alors Rodríguez Directores Ana Mª Crespo de las Casas Pradeep K. Divakar Madrid, 2018 © David Alors Rodríguez, 2017 Universidad Complutense de Madrid, Facultad de Farmacia Departamento de Biología Vegetal II DIVERSIDAD Y ASPECTOS MICROEVOLUTIVOS EN COSIMBIONTES LIQUÉNICOS MICROEVOLUTIVE ASPECTS AND DIVERSITY IN LICHEN CO-SYMBIONTS MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR: David Alors Rodríguez Bajo la dirección de los doctores: Ana Mª Crespo de las Casas y Pradeep K. Divakar Madrid, 2017 Dedicatoria Dedico esta tesis a mi familia por su apoyo incondicional desde mi más tierna infancia. Siempre estuvieron a mi lado y yo al suyo. Y solo en los años de esta tesis y con mis estancias en el extranjero me alejé físicamente de ellos y no pude darles el tiempo que se merecían. Dedico esta tesis a toda mi familia, en especial a esas dos personas tan importantes e influyentes para mí que se han marchado en estos años, pero no del todo porque siguen en nuestra memoria. Agradecimientos En primer lugar agradezco mi educación científica desde la licenciatura en CC. Biológicas en la UA, a mi paso por el instituto Torre de la Sal-CSIC, bajo la supervisión de la Dra. Ana Mª Gomez-Peris. Agradezco la oportunidad que me dio la catedrática Ana Mª Crespo de las Casas, asesorada por el Dr. C. -
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:40049989 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA ! STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION A dissertation presented by DANNY HAELEWATERS to THE DEPARTMENT OF ORGANISMIC AND EVOLUTIONARY BIOLOGY in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Biology HARVARD UNIVERSITY Cambridge, Massachusetts April 2018 ! ! © 2018 – Danny Haelewaters All rights reserved. ! ! Dissertation Advisor: Professor Donald H. Pfister Danny Haelewaters STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION ABSTRACT CHAPTER 1: Laboulbeniales is one of the most morphologically and ecologically distinct orders of Ascomycota. These microscopic fungi are characterized by an ectoparasitic lifestyle on arthropods, determinate growth, lack of asexual state, high species richness and intractability to culture. DNA extraction and PCR amplification have proven difficult for multiple reasons. DNA isolation techniques and commercially available kits are tested enabling efficient and rapid genetic analysis of Laboulbeniales fungi. Success rates for the different techniques on different taxa are presented and discussed in the light of difficulties with micromanipulation, preservation techniques and negative results. CHAPTER 2: The class Laboulbeniomycetes comprises biotrophic parasites associated with arthropods and fungi. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
A Provisional Checklist of the Lichens of Belarus
Opuscula Philolichenum, 17: 374-479. 2018. *pdf effectively published online 31December2018 via (http://sweetgum.nybg.org/philolichenum/) A Provisional Checklist of the Lichens of Belarus ANDREI TSURYKAU1 ABSTRACT. – A total of 606 species and five subspecific taxa of lichens and allied fungi are documented from Belarus based on combined historical (pre-1980) and modern (post-1980) records. Of these, 50 (8.3%) are represented by only historical reports, 235 (38.8%) are represented by only modern vouchers, and 310 (51.2%) are represented by both historical and modern records. Eleven species are known only from generalized published reports that lacked specific location data. Eighty-eight species are excluded as erroneous reports, or considered as doubtful records. KEYWORDS. – Biodiversity, distribution, lichenized fungi, historical baseline. INTRODUCTION Published accounts of the lichens of Belarus date to the end of the 18th century (Gilibert 1781). In the first phase of lichenological discovery in the country (1780–1900) lichens did not attract special attention and were reported among the general lists of vascular plants and fungi. However, 49 species were reported by the French botanist J.E. Gilibert, the Russian ethnographer of Belarusian origin N. Downar (Dovnar-Zapol'skiy) and Polish botanists K. Filipowicz and F. Błoński (Błoński 1888, 1889; Downar 1861; Filipowicz 1881; Gilibert 1781, 1792). In the early 20th century (1900–1925), there was a second phase of lichenological discovery in Belarus. During that time, Belarusian pioneer lichenologist V.P. Savicz and his wife L.I. Ljubitzkaja (later Savicz-Ljubitzkaja) reported 91 species new to the country (Ljubitzkaja 1914; Savicz 1909, 1910, 1911, 1925; Savicz & Savicz 1924; Wyssotzky et al. -
Opuscula Philolichenum, 11: 120-XXXX
Opuscula Philolichenum, 13: 102-121. 2014. *pdf effectively published online 15September2014 via (http://sweetgum.nybg.org/philolichenum/) Lichens and lichenicolous fungi of Grasslands National Park (Saskatchewan, Canada) 1 COLIN E. FREEBURY ABSTRACT. – A total of 194 lichens and 23 lichenicolous fungi are reported. New for North America: Rinodina venostana and Tremella christiansenii. New for Canada and Saskatchewan: Acarospora rosulata, Caloplaca decipiens, C. lignicola, C. pratensis, Candelariella aggregata, C. antennaria, Cercidospora lobothalliae, Endocarpon loscosii, Endococcus oreinae, Fulgensia subbracteata, Heteroplacidium zamenhofianum, Lichenoconium lichenicola, Placidium californicum, Polysporina pusilla, Rhizocarpon renneri, Rinodina juniperina, R. lobulata, R. luridata, R. parasitica, R. straussii, Stigmidium squamariae, Verrucaria bernaicensis, V. fusca, V. inficiens, V. othmarii, V. sphaerospora and Xanthoparmelia camtschadalis. New for Saskatchewan alone: Acarospora stapfiana, Arthonia glebosa, A. epiphyscia, A. molendoi, Blennothallia crispa, Caloplaca arenaria, C. chrysophthalma, C. citrina, C. grimmiae, C. microphyllina, Candelariella efflorescens, C. rosulans, Diplotomma venustum, Heteroplacidium compactum, Intralichen christiansenii, Lecanora valesiaca, Lecidea atrobrunnea, Lecidella wulfenii, Lichenodiplis lecanorae, Lichenostigma cosmopolites, Lobothallia praeradiosa, Micarea incrassata, M. misella, Physcia alnophila, P. dimidiata, Physciella chloantha, Polycoccum clauzadei, Polysporina subfuscescens, P. urceolata, -
Smithrobertj2017
AN ABSTRACT OF THE DISSERTATION OF Robert J. Smith for the degree of Doctor of Philosophy in Botany and Plant Pathology presented on May 1, 2017. Title: Realized and Potential Climate Responses of Lichen and Bryophyte Communities in a National Forest Inventory Abstract approved: Bruce McCune Climate and terrestrial vegetation have had mutual feedbacks for nearly five hundred million years, yet both are now departing from recent historical norms, with uncertain implications for forest ecosystems. This dissertation outlines the current and potential future climate responses of lichen and bryophyte communities in the United States as part of a national forest inventory. The first task was to identify influences on carbon and nitrogen storage of moss and lichen “ground layers” in subarctic interior Alaska. Nutrient stores were more sensitive to local vegetation and topography than regional macroclimate. Nutrients and biomass were greatest among apparently less-disturbed stands. This suggests that climatic changes could diminish ground layer nutrient storage indirectly if they promote intensifying wildfire regimes or expansions of competitive vascular vegetation. Turning to focus on species diversity, the next task was to quantify the strength of relationship between epiphytic lichen community composition and macroclimate across the 4,000 km-long swath of the U.S. Pacific coastal states. The strongest fitting lichen response gradients involved precipitation, temperature, and a heat-moisture index. Lichen indicator species (diagnostic of ten defined climate zones) emerged as useful monitoring tools because their abundance changes could signal shifting climate zone boundaries. After establishing key present-day climatic relationships, the next task was to pinpoint nationwide locations where epiphytic lichen communities will be most vulnerable to species losses under current and future warming scenarios. -
Endophytic and Endolichenic Fungal Diversity in Maritime Antarctica Based on Cultured Material and Their Evolutionary Position Amongdikarya
VOLUME 2 DECEMBER 2018 Fungal Systematics and Evolution PAGES 263–272 doi.org/10.3114/fuse.2018.02.07 Endophytic and endolichenic fungal diversity in maritime Antarctica based on cultured material and their evolutionary position amongDikarya N.H. Yu1,2#, S.-Y. Park3#, J.A. Kim4, C.-H. Park1, M.-H. Jeong1, S.-O. Oh5, S.G. Hong6, M. Talavera7, P.K. Divakar8*, J.-S. Hur1* 1Korean Lichen Research Institute, Sunchon National University, Suncheon, Korea 2Division of Applied Bioscience and Biotechnology, Institute of Environmentally Friendly Agriculture, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Korea 3Department of Plant Medicine, College of Life Science and Natural Resources, Sunchon National University, Suncheon, Korea 4National Institute of Biological Resources, Incheon, South Korea 5Division of Forest Biodiversity, Korea National Arboretum, Pocheon, Korea 6Division of Polar Life Sciences, Korea Polar Research Institute, Incheon, Korea 7Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain 8Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain *Corresponding authors: [email protected], [email protected] #These authors contributed equally to this work. Key words: Abstract: Fungal endophytes comprise one of the most ubiquitous groups of plant symbionts. They live bryophytes asymptomatically within vascular plants, bryophytes and also in close association with algal photobionts endophytes inside lichen thalli. While endophytic diversity in land plants has been well studied, their diversity in lichens lichens and bryophytes are poorly understood. Here, we compare the endolichenic and endophytic fungal multi-locus molecular phylogeny communities isolated from lichens and bryophytes in the Barton Peninsula, King George Island, Antarctica. -
Evolution of Lichens H
Evolution of Lichens H. Thorsten Lumbsch and Jouko Rikkinen 1 INTRODUCTION—THE DIVERSITY OF FUNGAL LIFESTYLES Fungi represent one of the three major crown lineages of eukaryotes, besides plants and animals. For their nutrition, fungi either decompose organic material or form symbiotic associations with other organisms. These symbiotic relationships vary from parasitic lifestyle, such as the rice blight fungus (Partida-Martinez and Hertweck 2005), which causes damage to rice seedlings and uses endosymbiotic bacteria for toxin production, to mutualistic relationships, such as endomycorrhizal relationships, the origin of which coincides with the early evolution of land plants (Simon et al. 1993). There is a continuum among symbiotic associations, from mutualistic to parasitic lifestyles, and some fungal species are known to exhibit different kinds of relationships with different hosts, such as species in the genus Colletotrichum, which can form mutualistic relationships with some plants and have parasitic relationship with other hosts (Redman, Dunigan, and Rodriguez 2001). In addition, at an evolutionary scale, changes of nutritional modes (parasitism versus mutualism) and inter-kingdom host switches have been shown to be common in fungi (Spatafora et al. 2007; Arnold et al. 2009). Given that all fungi are heterotrophic, it is not surprising that many of them have developed symbiotic relationships with photoautotrophic organisms, such as cyanobacteria, algae, and land plants. Fungal relationships with vascular plants are mostly in form of mycorrhiza, such as ectomycorrhizal (Agerer 1991; Wiemken and Boller 2002), endomycorrhizal (Bonfantefasolo and Spanu 1992), and the unique orchid mycorrhizal associations, in which plant seedlings are, from the very beginning, dependent on symbiotic fungi as carbohydrate source (Rasmussen 2002; Dearnaley 2007; Rasmussen and Rasmussen 2009). -
New Insights Into the Earlier Evolutionary History of Epiphytic
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.02.454570; this version posted August 3, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 New insights into the earlier evolutionary history of 2 epiphytic macrolichens 3 Qiuxia Yang1,2#, Yanyan Wang1#, Robert Lücking3, H. Thorsten Lumbsch4, Xin Wang5, Zhenyong Du6, 4 Yunkang Chen7,8, Ming Bai9, Dong Ren10, Jiangchun Wei1,2, Hu Li6†, Yongjie Wang10† and Xinli Wei1,2† 5 1State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 6 100101, China. 7 2College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China. 8 3Botanischer Garten und Botanisches Museum, Freie Universität Berlin, 14195 Berlin, Germany. 9 4Science & Education, The Field Museum, Chicago, IL 60605, USA. 10 5Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, 11 China. 12 6 Department of Entomology, MOA Key Lab of Pest Monitoring and Green Management, College of 13 Plant Protection, China Agricultural University, Beijing 100193, China. 14 7School of Agriculture, Ningxia University, Yinchuan, 750021, PR China 15 8College of Plant Protection, Agricultural University of Hebei, Baoding, 071001, PR China 16 9Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of 17 Sciences, Beijing 100101, China. 18 10College of Life Sciences and Academy for Multidisciplinary Studies, Capital Normal University, 19 Beijing 100048, China. 20 #Co-first author: Contribution equally to this work. 21 †For correspondence: [email protected] (H.L.), [email protected] (Y.W.) and 22 [email protected] (X.W.). -
Lichen Chemistry Is Concordant with Multilocus Gene Genealogy in the Genus Cetrelia (Parmeliaceae, Ascomycota)
Fungal Biology xxx (xxxx) xxx Contents lists available at ScienceDirect Fungal Biology journal homepage: www.elsevier.com/locate/funbio Lichen chemistry is concordant with multilocus gene genealogy in the genus Cetrelia (Parmeliaceae, Ascomycota) * Kristiina Mark a, b, Tiina Randlane a, ,Goran€ Thor c, Jae-Seoun Hur d, Walter Obermayer e, Andres Saag a a Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia b Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu 51014, Estonia c Swedish University of Agricultural Sciences, Uppsala, Sweden d Korean Lichen Research Institute, Sunchon National University, 255 Jungang-Ro, South Korea e Karl-Franzens-Universitat,€ Graz, Austria article info abstract Article history: The lichen genus Cetrelia represents a taxonomically interesting case where morphologically almost Received 8 May 2018 uniform populations differ considerably from each other chemically. Similar variation is not uncommon Received in revised form among lichenized fungi, but it is disputable whether such populations should be considered entities at 2 November 2018 the species level. Species boundaries in Cetrelia are traditionally delimited either as solely based on Accepted 22 November 2018 morphology or as combinations of morpho- and chemotypes. A dataset of four nuclear markers (ITS, IGS, Available online xxx Mcm7, RPB1) from 62 specimens, representing ten Cetrelia species, was analysed within Bayesian and Corresponding Editor: Martin Grube maximum likelihood frameworks. Analyses recovered a well-resolved phylogeny where the traditional species generally were monophyletic, with the exception of Cetrelia chicitae and Cetrelia pseudolivetorum. Keywords: Species delimitation analyses supported the distinction of 15 groups within the studied Cetrelia taxa, Character evolution dividing three traditionally identified species into some species candidates.