Plant Biotechnology Department :Biotechnology 2018- 19

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Plant Biotechnology Department :Biotechnology 2018- 19 BT 6010 - Plant Biotechnology Department :Biotechnology 2018- 19 DEPARTMENT OF BIOTECHNOLOGY Faculty Name : Dr. A. Sai Ramesh Faculty Code : HTS 1396 Subject Name : PLANT BIOTECHNOLOGY Subject Code : BT6010 (C321) Year & Semester : III & VI Date of Compilation : 22/11/18 VTHT Page 1 BT 6010 - Plant Biotechnology Department :Biotechnology 2018- 19 DEPARTMENT OF BIOTECHNOLOGY COURSE DETAILS Faculty Name : Dr. A. Sai Ramesh Faculty Code: HTS 1396 Subject Name: PLANT BIOTECHNOLOGY Subject Code: BT6010 (C321) Department: Biotechnology Year & Semester: III & VI Date of Compilation: 22/11/18 COURSE OBJECTIVES Course Outcomes: At the end of the course, the student will be able to: Knowledge CO No Course Outcomes Level C321.1 Understand the fundamentals of plant cells, structure and functions K2 C321.2 Understand the regulation and transport of proteins K2 C321.3 Learn the nitrogen fixation mechanism and significance of viral vectors K2 C321.4 Gain the knowledge about the plant tissue culture and transgenic plants K3 C321.5 Use of the gained knowledge for the development of therapeutic products K3 Mapping of Course Outcomes with Program Outcomes CO PO1 PO 2 PO 3 PO 4 PO 5 PO 6 PO 7 PO 8 PO 9 PO 10 PO 11 PO 12 C321.1 2 - - - - - - - - - - - C321.2 2 - - - - - - - - - - - C321.3 2 - 1 1 - 1 1 - - - 1 2 C321.4 2 1 3 2 - 1 1 1 - - 2 2 C321.5 2 2 3 3 - 2 3 2 - 1 2 2 C.No PO1 PO 2 PO 3 PO 4 PO 5 PO 6 PO 7 PO 8 PO 9 PO 10 PO 11 PO 12 C321 2 - 3 - - 1 1 - - - 2 2 Mapping Relevancy 3 – Substantial (Highly relevant), 2 – Moderate (Medium), 1 – Slight (Low) Course delivery methods Class room lecture - Black board PPTs, Videos Lab Demonstrations Activities like In Plant Training, Industrial Visit and Guest Lecture Assessment methods Continuous Internal Assessment Assignments Seminars VTHT Page 2 BT 6010 - Plant Biotechnology Department :Biotechnology 2018- 19 BT6010 PLANT BIOTECHNOLOGY L T P C 3 0 0 3 AIM To develop the skills of the students in the area of Plant Biotechnology OBJECTIVES At the end of the course the student would have learnt about the applications of Genetic Engineering in Plant and how to develop Transgenic plants. This will facilitate the student to take up project work in this area. UNIT I ORGANIZATION OF GENETIC MATERIAL 9 Genetic material of plant cells – nucleosome structure and its biological significance; junk and repeat sequences; outline of transcription and translation. UNIT II CHLOROPLAST & MITOCHONDRIA 9 Structure, function and genetic material; rubisco synthesis and assembly, coordination, regulation and transport of proteins. Mitochondria: Genome, cytoplasmic male sterility and import of proteins. UNIT III NITROGEN FIXATION 9 Nitrogenase activity, nod genes, nif genes, bacteroids. UNITIV AGROBACTERIUM & VIRAL VECTORS 9 Pathogenesis, crown gall disease, genes involved in the pathogenesis, Ti plasmid – t-DNA, importance in genetic engineering. Viral Vectors: Gemini virus, cauliflower mosaic virus, viral vectors and its benefits. UNIT V APPLICATION OF PLANT BIOTECHNOLOGY 9 Outline of plant tissue culture, transgenic plants, herbicide and pest resistant plants, molecular pharming , theraputic products. TOTAL: 45 PERIODS TEXT BOOKS: 1. Chawla, H.S., “Introduction to Plant Biotechnology”, 3rd Edition, Science Publishers, 2009. 2. Gamburg OL, Philips GC, Plant Tissue & Organ Culture fundamental Methods, Narosa Publications. 1995. REFERENCES: 1. Stewart Jr., C.N., “Plant Biotechnology and Genetics: Principles, Techniques and Applications” Wiley-Interscience, 2008. 2. Heldt HW. Plant Biochemistry & Molecular Biology, Oxford University Press. 1997. 3. Ignacimuthu .S, Applied Plant Biotechnology , Tata McGraw Hill. 1996. VTHT Page 3 BT 6010 - Plant Biotechnology Department :Biotechnology 2018- 19 BT6010 PLANT BIOTECHNOLOGY Unit I ORGANIZATION OF GENETIC MATERIAL 1. Differentiate prokaryotic and eukaryotic genetic material. In prokaryotes genetic material is present inside the nucleus and packed well by histones. In eukaryotes there is no nucleus and histones. 2. Write notes on nucleosome. Nucleosomes are bead like structures, each bead contain around 200 bp DNA, RNA and histonic and non histonic proteins. Histonic proteins are responsible for DNA condensation. 3. What are histone proteins? Explain their role.(Nov. 2011, May 2012, Nov. 2014, May. 2014, May - 16) These are basic proteins; 10 – 20 of aminoacids are basic aa’s like Arginine and Lysine. H2a, H2b, H3, H4 are involved in octomer formation. The condensation of eukaryotic DNA occurs only in the presence of histonic octomeres and the H1 proteins are playing major role in sealing the nucleosome structure. 4. Write notes on solenoid structure Interphase chromosome is 30 nm thick,it is formed due to the folding of nucleosome chain into a solenoid structure , each turn is having 6 nucleosomes and a central hole. 5. Explain the work of Watson and Crick DNA is made of double helical structure two right handed helical polynucleotide chain run opposite direction and two strands are held together by hydrogen bonds. 6. Enumerate the difference between B-DNA and Z-DNA. B-DNA is the right handed form, at 92% relative humidity 10bp/turn it is the most stable form. Z – DNA is the zig zag form and 12 bp/turn. 7. What is A-DNA? It is a slightly right handed form, at 62% relative humidity 11bp/turn and tilted 20 away from the helical axis. 8. What are plasmids? These are extrachromosamal self replicating double slandered, closed circular DNA Plasmids contains genes for autoreplication, restriction site, antibiotic resistance, metal resistance and Pollutant degradation, ex: Ti and Ri plasmid. 9. What do you mean by DNA replication? It is a process in which DNA multiplication occurs, parental strands will be acting as a template and new strands are complementary to the template strands, for this DNA polymerases, templates, nucleotide triphosphates, etc. are needed. 10. Differate rolling circle and theta mode of replication Rolling circle replication has a peculiarity that the new strand rolls over the template strand until the completion of the new strand synthesis. In theta mode the intermediate formed looks like a letter Thetta. 11. Write notes on Sigma factor. RNA polymerase in prokaryotes are made of five different sub units among this sigma factor is acting as an initiator for transcription, after transcribing a short segment of RNA this factor will be removed from the other factors. 12. Give two examples for gene regulation in plants? Etiolation in plants that is a dark plants lose their chlorophyll and their green colour. Expression of heat shock proteins in plants 13. What is sigma factor? Sigma factor is a subunit of RNA polymerase in prokaryotes, it is responsible for recognising the initiation site for transcription in prokaryotes, after initiation it will be relieved from the core enzyme. 14. Differentiate conservative and semiconservative replication VTHT Page 4 BT 6010 - Plant Biotechnology Department :Biotechnology 2018- 19 Conservative is a replication in which the parental strands will be retained and there is no denaturation occur. But in semiconservation denaturation of the double strand occur and each strand will be act as a template from which complementary strands will be synthesised. 15. What do you mean by a transcription unit? RNAs are transcribed in different units each unit is separated by non transcribed spacers these are repeating units. Ex in Xenopus 5.8, 18,28s rRNA are in a single unit. 16. Differentiate RNA polymerase in Pro and eukaryotes. In prokaryotes RNA polymerase contain 5 different sub units among this Sigma sub unit is responsible for the initiation of transcription. In eukaryotes 3 types of RNA polymerases are present each one is responsible for the synthesis of different rRNAs. RNA polymerase I - 5.8s,18s& 28s rRNAs, RNA polymerase II – tRNA &5s rRNA and RNA polymerase III – RNA. 17. Name few processing events in tRNA. Removal of introns in Yeast tRNA and addition of CCA sequence, etc. 18. What is the difference between transcription and translation? Transcription is the DNA dependant RNA synthesis, but translation is the protein synthesis. 19. What is aminoacylation of tRNA ? Aminoacylation is a process in which tRNA is added with aminoacid and the tRNA with the aminoacid is called as acylated tRNA. 20. Explain tRNAmet in E.coli. In E.coli the tRNA charged with initiation aminoacid methionine is formilated methionine it is designated as tRNA fmet. 21. Explain Shine Dalgarno sequence. During translation, binding of 30s ribosomal subunit on mRNA and 3’OH end of 16srRNA occur, this stretch of complementary sequence in mRNA with 16srRNA is called as Shine Dalgarno sequence. 22. What do you mean by translocation? When the peptide bond formation is over, the acylated tRNA from A-site moved into the P-site this process is called as translocation. 23. What is peptidyl transferase centre? Peptide bond formation between aminoacids in A and P site occur in the prescence of an enzyme peptidyl transferase, this reaction occur in the 50s ribosomal subunit hence it is called as peptidyl transferase centre. 24. What are polysomes? In prokaryotes during polypeptide chain elongation number of ribosomes will be attached on a single mRNA this cluster of ribosomes on mRNA is called polysomes. 25. Differentiate eukaryotic and prokaryotic mRNA. In prokaryotes it is polycistronic but in eukaryotes it is monocistronic and in eukaryotes 5’ capping and poly-A tail will be there. 26. List out some properties of genetic material? (May 2012). For a molecule
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