Abnormal Centrosome and Spindle Morphology in a Patient With
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
3 Saccharomyces Cell Structure
Genetic Techniques for Biological Research Corinne A. Michels Copyright q 2002 John Wiley & Sons, Ltd ISBNs: 0-471-89921-6 (Hardback); 0-470-84662-3 (Electronic) 3 Saccharomyces Cell Structure Saccharomycescerevisiue is aeukaryote and as such containsthe subcellular organelles commonlyfound in eukaryotes.The structure and function of these organelles is fundamentally the same as it is in other eukaryotes with less versatile systems for genetic analysis, and for this reason Saccharomyces is the organism of choice for many cell biologists. For a truly in-depth review of Saccharomyces cell structure and function, the reader is referred to The Molecular and Cellular Biology of theYeast Saccharomyces: Vol. 3: CellCycle and Cell Biology (Broach etal., 1997). The discussion here will provide a very brief overview of the cell structure and will focus on certain unique features of Saccharomyces cell structure in order to facilitate reading of the literature. CELL SHAPE AND GROWTH PATTERNS Underusual culture conditions, Saccharomyces is ellipsoidaUovoid in shapeand approximately 5-10 pm long by 3-7 pm wide. This is referred to as the yeast form. Figure 3.1 shows a scanning electron micrograph (SEM) of a cell in the yeast form. Cell division is by budding; that is, a smaller ovoid daughter cell formsas a projection from the surface of the mother cell. Haploid cells are generally about one-half the volume of diploid cells. The characteristic shape is maintained by a rigid cell wall that completely surrounds the plasma membrane of Saccharomyces. Changes in this shape involve remodeling of the cell wall and occur during budding, mating,and pseudohyphal differentiation. -
Identification and Characterization of Genes Essential for Human Brain Development
Identification and Characterization of Genes Essential for Human Brain Development The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Ganesh, Vijay S. 2012. Identification and Characterization of Genes Essential for Human Brain Development. Doctoral dissertation, Harvard University. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:9773743 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Copyright © 2012 by Vijay S. Ganesh All rights reserved. Dissertation Advisor: Dr. Christopher A. Walsh Author: Vijay S. Ganesh Identification and Characterization of Genes Essential for Human Brain Development Abstract The human brain is a network of ninety billion neurons that allows for many of the behavioral adaptations considered unique to our species. One-fifth of these neurons are layered in an epithelial sheet known as the cerebral cortex, which is exquisitely folded into convolutions called gyri. Defects in neuronal number clinically present with microcephaly (Greek for “small head”), and in inherited cases these defects can be linked to mutations that identify genes essential for neural progenitor proliferation. Most microcephaly genes are characterized to play a role in the centrosome, however rarer presentations of microcephaly have identified different mechanisms. Charged multivesicular body protein/Chromatin modifying protein 1A (CHMP1A) is a member of the ESCRT-III endosomal sorting complex, but is also suggested to localize to the nuclear matrix and regulate chromatin. -
Molecular Genetics of Microcephaly Primary Hereditary: an Overview
brain sciences Review Molecular Genetics of Microcephaly Primary Hereditary: An Overview Nikistratos Siskos † , Electra Stylianopoulou †, Georgios Skavdis and Maria E. Grigoriou * Department of Molecular Biology & Genetics, Democritus University of Thrace, 68100 Alexandroupolis, Greece; [email protected] (N.S.); [email protected] (E.S.); [email protected] (G.S.) * Correspondence: [email protected] † Equal contribution. Abstract: MicroCephaly Primary Hereditary (MCPH) is a rare congenital neurodevelopmental disorder characterized by a significant reduction of the occipitofrontal head circumference and mild to moderate mental disability. Patients have small brains, though with overall normal architecture; therefore, studying MCPH can reveal not only the pathological mechanisms leading to this condition, but also the mechanisms operating during normal development. MCPH is genetically heterogeneous, with 27 genes listed so far in the Online Mendelian Inheritance in Man (OMIM) database. In this review, we discuss the role of MCPH proteins and delineate the molecular mechanisms and common pathways in which they participate. Keywords: microcephaly; MCPH; MCPH1–MCPH27; molecular genetics; cell cycle 1. Introduction Citation: Siskos, N.; Stylianopoulou, Microcephaly, from the Greek word µικρoκεϕαλi´α (mikrokephalia), meaning small E.; Skavdis, G.; Grigoriou, M.E. head, is a term used to describe a cranium with reduction of the occipitofrontal head circum- Molecular Genetics of Microcephaly ference equal, or more that teo standard deviations -
The Ultrastructure of Spermatozoa and Spermiogenesis in Pyramidellid Gastropods, and Its Systematic Importance John M
HELGOLANDER MEERESUNTERSUCHUNGEN Helgol~inder Meeresunters. 42,303-318 (1988) The ultrastructure of spermatozoa and spermiogenesis in pyramidellid gastropods, and its systematic importance John M. Healy School of Biological Sciences (Zoology, A08), University of Sydney; 2006, New South Wales, Australia ABSTRACT: Ultrastructural observations on spermiogenesis and spermatozoa of selected pyramidellid gastropods (species of Turbonilla, ~gulina, Cingufina and Hinemoa) are presented. During spermatid development, the condensing nucleus becomes initially anterio-posteriorly com- pressed or sometimes cup-shaped. Concurrently, the acrosomal complex attaches to an electron- dense layer at the presumptive anterior pole of the nucleus, while at the opposite (posterior) pole of the nucleus a shallow invagination is formed to accommodate the centriolar derivative. Midpiece formation begins soon after these events have taken place, and involves the following processes: (1) the wrapping of individual mitochondria around the axoneme/coarse fibre complex; (2) later internal metamorphosis resulting in replacement of cristae by paracrystalline layers which envelope the matrix material; and (3) formation of a glycogen-filled helix within the mitochondrial derivative (via a secondary wrapping of mitochondria). Advanced stages of nuclear condensation {elongation, transformation of fibres into lamellae, subsequent compaction) and midpiece formation proceed within a microtubular sheath ('manchette'). Pyramidellid spermatozoa consist of an acrosomal complex (round -
Ncomms4885.Pdf
ARTICLE Received 4 Feb 2014 | Accepted 14 Apr 2014 | Published 30 May 2014 DOI: 10.1038/ncomms4885 Microcephaly disease gene Wdr62 regulates mitotic progression of embryonic neural stem cells and brain size Jian-Fu Chen1,2, Ying Zhang1, Jonathan Wilde1, Kirk C. Hansen3, Fan Lai4 & Lee Niswander1 Human genetic studies have established a link between a class of centrosome proteins and microcephaly. Current studies of microcephaly focus on defective centrosome/spindle orientation. Mutations in WDR62 are associated with microcephaly and other cortical abnormalities in humans. Here we create a mouse model of Wdr62 deficiency and find that the mice exhibit reduced brain size due to decreased neural progenitor cells (NPCs). Wdr62 depleted cells show spindle instability, spindle assembly checkpoint (SAC) activation, mitotic arrest and cell death. Mechanistically, Wdr62 associates and genetically interacts with Aurora A to regulate spindle formation, mitotic progression and brain size. Our results suggest that Wdr62 interacts with Aurora A to control mitotic progression, and loss of these interactions leads to mitotic delay and cell death of NPCs, which could be a potential cause of human microcephaly. 1 Howard Hughes Medical Institute, Department of Pediatrics, University of Colorado Anschutz Medical Campus, Children’s Hospital Colorado, Aurora, Colorado 80045, USA. 2 Department of Genetics, Department of Biochemistry & Molecular Biology, University of Georgia, Athens, Georgia 30602, USA. 3 Biochemistry & Molecular Genetics, University of Colorado Denver, Aurora, Colorado 80045, USA. 4 The Wistar Institute, 3601 Spruce Street, Philadelphia, Pennsylvania 19104, USA. Correspondence and requests for materials should be addressed to J-F.C. (email: [email protected]) or to L.N. -
Formation and Structure of Filamentous Systems for Insect Flight and Mitotic Movements Melvyn Dennis Goode Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1967 Formation and structure of filamentous systems for insect flight and mitotic movements Melvyn Dennis Goode Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Genetics Commons Recommended Citation Goode, Melvyn Dennis, "Formation and structure of filamentous systems for insect flight and mitotic movements " (1967). Retrospective Theses and Dissertations. 3391. https://lib.dr.iastate.edu/rtd/3391 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. FORMATION AND STRUCTURE OF FILAMENTOUS SYSTEMS FOR INSECT FLIGHT AND MITOTIC MOVEMENTS by Melvyn Dennis Goode A Dissertation Submitted to the Graduate Faculty in Partial Fulfillment of The Requirements for the Degree of DOCTOR OF PHILOSOPHY Major Subject: Cell Biology Approved: Signature was redacted for privacy. In Charge oi Major Work Signature was redacted for privacy. Chairman Advisory Committee Cell Biology Program Signature was redacted for privacy. Signature was redacted for privacy. Iowa State University Of Science and Technology Ames, Iowa: 1967 ii TABLE OF CONTENTS Page I. INTRODUCTION 1 PART ONE. THE MITOTIC APPARATUS OF A GIANT AMEBA 5 II. THE STRUCTURE AND PROPERTIES OF THE MITOTIC APPARATUS 6 A. Introduction .6 1. Early studies of mitosis 6 2. The mitotic spindle in living cells 7 3. -
Ochromonas Mitochondria Contain a Specific Chloroplast Protein
Proc. Nati. Acad. Sci. USA Vol. 82, pp. 1456-1459, March 1985 Cell Biology Ochromonas mitochondria contain a specific chloroplast protein (small subunit of ribulose-1,5-blsphosphate carboxylase/immunoelectron microscopy/chrysophycean alga/promiscuous DNA) GINETTE LACOSTE-ROYAL AND SARAH P. GIBBS Department of Biology, McGill University, Montreal, Quebec H3A iBi, Canada Communicated by Lynn Margulis, November 1, 1984 ABSTRACT Antibody raised against the small subunit of at 200C in Beijerinck's medium (15) at a light intensity of ribulose-1,5-bisphosphate carboxylase [3-phospho-D-glycerate 4300 lux. carboxy-lyase (dimerizing), EC 4.1.1.39] of Chlamydomonas Fixation and Embedding. Cells were fixed in 1% (vol/vol) reinhardtii labeled the mitochondria as well as the chloroplast glutaraldehyde in 0.1 M phosphate buffer for 90 min at 40C, of the chrysophyte alga Ochromonas danica in sections pre- rinsed in buffer and blocked in 2% (wt/vol) agar. The agar pared for immunoelectron microscopy by the protein A-gold blocks were dehydrated in 25% (vol/vol) ethanol at -50C, technique. The same antibody labeled the chloroplast but not then in 50%, 75%, and 95% ethanol at -18'C. Embedding the mitochondria of C. reinhardti. A quantitative study of la- was carried out at -18'C in Lowicryl K4M (16) according to beling in dark-grown, greening (32 hr light), and mature green the following schedule: 95% ethanol/resin, 1:1 (vol/vol), cells of 0. danica revealed that anti-small-subunit staining in overnight; 95% ethanol/resin, 1:2 (vol/vol), 2 times for 2 hr the mitochondria increased progressively in the light as it does each; pure resin, 2 hr and then overnight. -
(JNK)-Binding Protein WDR62 Is Recruited to Stress Granules And
Molecular Biology of the Cell Vol. 21, 117–130, January 1, 2010 A Novel c-Jun N-terminal Kinase (JNK)-binding Protein WDR62 Is Recruited to Stress Granules and Mediates a Nonclassical JNK Activation Tanya Wasserman,*† Ksenya Katsenelson,*† Sharon Daniliuc,*† Tal Hasin,* Mordechay Choder,‡ and Ami Aronheim* Departments of *Molecular Genetics and ‡Microbiology, The Rappaport Family Institute for Research in the Medical Sciences, Technion-Israel Institute of Technology, Haifa 31096, Israel Submitted June 22, 2009; Revised October 27, 2009; Accepted October 29, 2009 Monitoring Editor: Jonathan Chernoff The c-Jun N-terminal kinase (JNK) is part of a mitogen-activated protein kinase (MAPK) signaling cascade. Scaffold proteins simultaneously associate with various components of the MAPK signaling pathway and play a role in signal transmission and regulation. Here we describe the identification of a novel scaffold JNK-binding protein, WDR62, with no sequence homology to any of the known scaffold proteins. WDR62 is a ubiquitously expressed heat-sensitive 175-kDa protein that specifically associates with JNK but not with ERK and p38. Association between WDR62 and JNKs occurs in the absence and after either transient or persistent stimuli. WDR62 potentiates JNK kinase activity; however it inhibits AP-1 transcription through recruitment of JNK to a nonnuclear compartment. HEK-293T cells transfected with WDR62 display cytoplasmic granular localization. Overexpression of stress granule (SG) resident proteins results in the recruit- ment of endogenous WDR62 and activated JNK to SG. In addition, cell treatment with arsenite results in recruitment of WDR62 to SG and activated JNK to processing bodies (PB). JNK inhibition results in reduced number and size of SG and reduced size of PB. -
Cenpj Regulates Cilia Disassembly and Neurogenesis in the Developing Mouse Cortex
This Accepted Manuscript has not been copyedited and formatted. The final version may differ from this version. A link to any extended data will be provided when the final version is posted online. Research Articles: Development/Plasticity/Repair Cenpj regulates cilia disassembly and neurogenesis in the developing mouse cortex Wenyu Ding1,2, Qian Wu1,2, Le Sun1,2, Na Clara Pan1,2 and Xiaoqun Wang1,2,2 1State Key Laboratory of Brain and Cognitive Science, CAS Center for Excellence in Brain Science and Intelligence Technology (Shanghai), Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China 2University of Chinese Academy of Sciences, Beijing 100049, China 3Beijing Institute for Brain Disorders, Beijing 100069, China https://doi.org/10.1523/JNEUROSCI.1849-18.2018 Received: 20 July 2018 Revised: 19 December 2018 Accepted: 24 December 2018 Published: 9 January 2019 Author contributions: W.D., Q.W., and X.W. designed research; W.D., Q.W., L.S., N.C.P., and X.W. performed research; W.D., Q.W., L.S., N.C.P., and X.W. analyzed data; W.D., Q.W., L.S., N.C.P., and X.W. edited the paper; W.D., Q.W., and X.W. wrote the paper; Q.W. and X.W. wrote the first draft of the paper; X.W. contributed unpublished reagents/analytic tools. Conflict of Interest: The authors declare no competing financial interests. We gratefully acknowledge Dr. Bradley Yoder (University of Alabama at Birmingham) kindly shared and transferred the mouse strain to us. We thank Dr. Tian Xue (University of Science and Technology of China) for sharing ARPE19 cell line with us. -
A Novel Single Base Pair Duplication in WDR62 Causes Primary Microcephaly Verena Rupp1, Sobiah Rauf2, Ishrat Naveed2, Windpassinger Christian1 and Asif Mir2*
Rupp et al. BMC Medical Genetics 2014, 15:107 http://www.biomedcentral.com/1471-2350/15/107 CASE REPORT Open Access A novel single base pair duplication in WDR62 causes primary microcephaly Verena Rupp1, Sobiah Rauf2, Ishrat Naveed2, Windpassinger Christian1 and Asif Mir2* Abstract Background: Primary microcephaly is a disorder of the brain resulting in a reduced head circumference that can come along with intellectual disability but with hardly any other neurological abnormalities. Case presentation: In this study we report on three Pakistani males from a consanguineous family with 2, 4 and 25 years, diagnosed with autosomal recessive primary microcephaly. By genotyping, Sanger sequencing and using bioinformatical approaches the disease causing mutation was identified and evaluated. Conclusion: By using a 250K SNP array, we were able to detect an 11Mb large autozygous region in the MCPH2 locus on chromosome 19q13.12. Sequencing of the associated gene, WDR62, revealed the frameshift causing single base pair duplication, c.2527dupG. This mutation is predicted to affect the structural features of WDR62 which in turn changes the conformation and function of the protein. Aspartic acid (D) at position 843 was found to be conserved among various ortholog species. The present findings will be helpful in genetic diagnosis of patients and future studies of WDR62. Keywords: Autosomal recessive primary microcephaly (MCPH), MCPH2 locus, WDR62, Mutation Background Although sloping foreheads and reduced intelligence are Autosomal recessive primary microcephaly (MCPH) is a very common, they are not listed as a basic criteria for the rare malformation of the head resulting in a circumfer- diagnosis of microcephaly [19,22]. -
The Role of Endoplasmic Reticulum in the Repair of Amoeba Nuclear Envelopes Damaged Microsurgically
J. Cell Sci. 14, 421-437 ('974) 421 Printed in Great Britain THE ROLE OF ENDOPLASMIC RETICULUM IN THE REPAIR OF AMOEBA NUCLEAR ENVELOPES DAMAGED MICROSURGICALLY C. J. FLICKINGER Department of Anatomy, School of Medicine, University of Virginia, CharlottesvilU, Virginia 22901, U.S.A. SUMMARY The nuclear envelopes of amoebae were damaged microsurgically, and the fate of the lesions was studied with the electron microscope. Amoebae were placed on the surface of an agar- coated slide. Using a glass probe, the nucleus was pushed from an amoeba, damaged with a chopping motion of the probe, and reinserted into the amoeba. Cells were prepared for electron microscopy at intervals of between 10 min and 4 days after the manipulation. Nuclear envelopes studied between 10 min and 1 h after the injury displayed extensive damage, includ- ing numerous holes in the nuclear membranes. Beginning 15 min after the manipulation, pieces of rough endoplasmic reticulum intruded into the holes in the nuclear membranes. These pieces of rough endoplasmic reticulum subsequently appeared to become connected to the nuclear membranes at the margins of the holes. By 1 day following the injury, many cells had died, but the nuclear membranes were intact in those cells that survived. The elaborate fibrous lamina or honeycomb layer characteristic of the amoeba nuclear envelope was resistant to early changes after the manipulation. Patches of disorganization of the fibrous lamina were present 5 h to 1 day after injury, but the altered parts showed evidence of progress toward a return to normal configuration by 4 days after the injury. It is proposed that the rough endoplasmic reticulum participates in the repair of injury to the nuclear membranes.