Rodentia, Spalacidae, Myospalacinae) in Eastern Russia Based on Genetic and Morphological Analysis
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Blind Mole Rat (Spalax Leucodon) Masseter Muscle: Structure, Homology, Diversification and Nomenclature A
Folia Morphol. Vol. 78, No. 2, pp. 419–424 DOI: 10.5603/FM.a2018.0097 O R I G I N A L A R T I C L E Copyright © 2019 Via Medica ISSN 0015–5659 journals.viamedica.pl Blind mole rat (Spalax leucodon) masseter muscle: structure, homology, diversification and nomenclature A. Yoldas1, M. Demir1, R. İlgun2, M.O. Dayan3 1Department of Anatomy, Faculty of Medicine, Kahramanmaras University, Kahramanmaras, Turkey 2Department of Anatomy, Faculty of Veterinary Medicine, Aksaray University, Aksaray, Turkey 3Department of Anatomy, Faculty of Veterinary Medicine, Selcuk University, Konya, Turkey [Received: 10 July 2018; Accepted: 23 September 2018] Background: It is well known that rodents are defined by a unique masticatory apparatus. The present study describes the design and structure of the masseter muscle of the blind mole rat (Spalax leucodon). The blind mole rat, which emer- ged 5.3–3.4 million years ago during the Late Pliocene period, is a subterranean, hypoxia-tolerant and cancer-resistant rodent. Yet, despite these impressive cha- racteristics, no information exists on their masticatory musculature. Materials and methods: Fifteen adult blind mole rats were used in this study. Dissections were performed to investigate the anatomical characteristics of the masseter muscle. Results: The muscle was comprised of three different parts: the superficial mas- seter, the deep masseter and the zygomaticomandibularis muscle. The superficial masseter originated from the facial fossa at the ventral side of the infraorbital foramen. The deep masseter was separated into anterior and posterior parts. The anterior part of the zygomaticomandibularis muscle arose from the snout and passed through the infraorbital foramen to connect on the mandible. -
Comparative Analyses of Past Population Dynamics Between Two Subterranean Zokor Species and the Response to Climate Changes
Turkish Journal of Zoology Turk J Zool (2013) 37: 143-148 http://journals.tubitak.gov.tr/zoology/ © TÜBİTAK Research Article doi:10.3906/zoo-1204-18 Comparative analyses of past population dynamics between two subterranean zokor species and the response to climate changes 1 1 1 1 1 1 Lizhou TANG , Long YU , Weidong LU , Junjie WANG , Mei MA , Xiaodong SHI , 1, 2 Jiangang CHEN *, Tongzuo ZHANG 1 College of Biologic Resource and Environmental Science, Qujing Normal University, Qujing, Yunnan 655011, China 2 Key Laboratory of the Qinghai-Tibetan Plateau Ecosystem and Biological Evolution and Adaptation, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, Qinghai 810001, China Received: 16.04.2012 Accepted: 21.09.2012 Published Online: 25.02.2013 Printed: 25.03.2013 Abstract: The mitochondrial cytochrome b sequences of 34 haplotypes from 114 individuals of Eospalax baileyi and GenBank data of 40 haplotypes from 121 individuals of Eospalax cansus were used to investigate if the Quaternary glaciations on the Qinghai-Tibetan Plateau (QTP) influenced the distribution and colonisation of these 2 species, and if both species presented congruous past population dynamics. The phylogenetic tree indicated a valid status for the genera Eospalax and Myospalax, and an independent species status for E. baileyi and E. cansus. The demographical population history of E. baileyi showed that the effective population size remained stable between 1.00 and 0.50 million years ago (Mya), increased quickly to a peak and fluctuated dramatically between 0.50 and 0.20 Mya, after which a stable level was maintained from 0.20 Mya to the present. -
TAXONOMIC STUDIES from RODENT OUTBREAK AREAS in the CHITTAGONG HILL TRACTS Nikhil
Bangladesh J. Zool. 46(2): 217-230, 2018 ISSN: 0304-9027 (print) 2408-8455 (online) NEW RECORDS OF RODENT SPECIES IN BANGLADESH: TAXONOMIC STUDIES FROM RODENT OUTBREAK AREAS IN THE CHITTAGONG HILL TRACTS Nikhil Chakma*, Noor Jahan Sarker, Steven Belmain1, Sohrab Uddin Sarker, Ken Aplin2 and Sontosh Kumar Sarker3 Department of Zoology, University of Dhaka, Dhaka-1000, Bangladesh Abstract: Rodents are regarded as crop pests, significant reservoirs and vectors for many zoonotic diseases around the world. Basic taxonomic information of rodents present in a locality can help understand which species are responsible as crop pest in that habitat. The phenomenon of the 50-year cycle of gregarious bamboo flowering and rodent outbreaks in the Chittagong Hill Tracts (CHT) of Bangladesh, rodents trapping were carried out in four habitats from March, 2009 to December, 2011 in Ruma upazila of Bandarban hill district. Variety of traps were used to capture small mammals. The captured species were measured and identified using taxonomical dichotomous keys and DNA bar-coding performed in Australia. A total of 14 different small mammalian species were captured of which nine belonging to the Muridae family, and one species each of Spalacidae, Sciuridae, Tupaiidae and Soricidae families. The dominant small mammal species captured were Rattus rattus (54.06%) followed by Mus musculus (26.39%), Rattus nitidus (10.98%), Suncus murinus (5.45%), Mus terricolor (1.09%), Mus cookii nagarum (0.97%), Cannomys badius (0.16%), Leopoldamys edwardsi (0.12%), Berylmys bowersi (0.12%), Vernaya fulva (0.08%), Rattus andamanensis (0.08%), Tupaia glis (0.04%) and Callosciurus pygerythrus (0.04%). -
Transcriptome Analysis of the Liver of Eospalax Fontanierii Under Hypoxia
Transcriptome Analysis of the Liver of Eospalax Fontanierii Under Hypoxia Zhiqiang Hao Shaanxi Normal University College of Life Sciences Lulu Xu Shaanxi Normal University College of Life Sciences Jianping He Shaanxi Normal University College of Life Sciences Guanglin Li Shaanxi Normal University College of Life Sciences Jingang Li ( [email protected] ) Shaanxi Normal University https://orcid.org/0000-0002-5664-0715 Research Keywords: Hypoxia adaptation, Eospalax fontanierii, transcriptome Posted Date: September 15th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-74186/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/27 Abstract Background Hypoxia can induce cell damage, inammation, carcinogenesis, and inhibit liver regeneration in non- adapted species. Because of their excellent hypoxia adaptation features, subterranean rodents have been widely studied to clarify the mechanism of hypoxia adaptation. Eospalax fontanierii, which is a subterranean rodent found in China, can survive for more than 10 h under 4% O2 without observable injury, while Sprague-Dawle rats can survive for less than 6 h under the same conditions. To explore the potential mechanism of hypoxia adaptation in E. fontanierii, we performed RNA-seq analysis of the liver in E. fontanierii exposed to different oxygen levels (6.5%, 10.5%, and 21%). Results Based on the bioinformatics analysis, 39,439 unigenes were assembled, and 56.78% unigenes were annotated using public databases (Nr, GO, Swiss-Prot, KEGG, and Pfam). In total, 725 differentially expressed genes (DEGs) were identied in the response to hypoxia; six with important functions were validated by qPCR. -
Downloaded from Ensembl (Www
Lin et al. BMC Genomics 2014, 15:32 http://www.biomedcentral.com/1471-2164/15/32 RESEARCH ARTICLE Open Access Transcriptome sequencing and phylogenomic resolution within Spalacidae (Rodentia) Gong-Hua Lin1, Kun Wang2, Xiao-Gong Deng1,3, Eviatar Nevo4, Fang Zhao1, Jian-Ping Su1, Song-Chang Guo1, Tong-Zuo Zhang1* and Huabin Zhao5* Abstract Background: Subterranean mammals have been of great interest for evolutionary biologists because of their highly specialized traits for the life underground. Owing to the convergence of morphological traits and the incongruence of molecular evidence, the phylogenetic relationships among three subfamilies Myospalacinae (zokors), Spalacinae (blind mole rats) and Rhizomyinae (bamboo rats) within the family Spalacidae remain unresolved. Here, we performed de novo transcriptome sequencing of four RNA-seq libraries prepared from brain and liver tissues of a plateau zokor (Eospalax baileyi) and a hoary bamboo rat (Rhizomys pruinosus), and analyzed the transcriptome sequences alongside a published transcriptome of the Middle East blind mole rat (Spalax galili). We characterize the transcriptome assemblies of the two spalacids, and recover the phylogeny of the three subfamilies using a phylogenomic approach. Results: Approximately 50.3 million clean reads from the zokor and 140.8 million clean reads from the bamboo ratwere generated by Illumina paired-end RNA-seq technology. All clean reads were assembled into 138,872 (the zokor) and 157,167 (the bamboo rat) unigenes, which were annotated by the public databases: the Swiss-prot, Trembl, NCBI non-redundant protein (NR), NCBI nucleotide sequence (NT), Gene Ontology (GO), Cluster of Orthologous Groups (COG), and Kyoto Encyclopedia of Genes and Genomes (KEGG). -
Checklist of Rodents and Insectivores of the Mordovia, Russia
ZooKeys 1004: 129–139 (2020) A peer-reviewed open-access journal doi: 10.3897/zookeys.1004.57359 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Checklist of rodents and insectivores of the Mordovia, Russia Alexey V. Andreychev1, Vyacheslav A. Kuznetsov1 1 Department of Zoology, National Research Mordovia State University, Bolshevistskaya Street, 68. 430005, Saransk, Russia Corresponding author: Alexey V. Andreychev ([email protected]) Academic editor: R. López-Antoñanzas | Received 7 August 2020 | Accepted 18 November 2020 | Published 16 December 2020 http://zoobank.org/C127F895-B27D-482E-AD2E-D8E4BDB9F332 Citation: Andreychev AV, Kuznetsov VA (2020) Checklist of rodents and insectivores of the Mordovia, Russia. ZooKeys 1004: 129–139. https://doi.org/10.3897/zookeys.1004.57359 Abstract A list of 40 species is presented of the rodents and insectivores collected during a 15-year period from the Republic of Mordovia. The dataset contains more than 24,000 records of rodent and insectivore species from 23 districts, including Saransk. A major part of the data set was obtained during expedition research and at the biological station. The work is based on the materials of our surveys of rodents and insectivo- rous mammals conducted in Mordovia using both trap lines and pitfall arrays using traditional methods. Keywords Insectivores, Mordovia, rodents, spatial distribution Introduction There is a need to review the species composition of rodents and insectivores in all regions of Russia, and the work by Tovpinets et al. (2020) on the Crimean Peninsula serves as an example of such research. Studies of rodent and insectivore diversity and distribution have a long history, but there are no lists for many regions of Russia of Copyright A.V. -
Annual Report 2013 Operating Indicators
ANNUAL REPORT 2013 OPERATING INDICATORS TRANSFORMER CAPACITY 743.6 GVA LENGTH OF POWER LINES 2,262 thousand kilometers ELECTRICITY DELIVERY ANNUAL 706 billion kWh NUMBER OF SUBSTATIONS REPORT 2013 REPORT 473 thousand units NUMBER OF EMPLOYEES 221.6 thousand people FINANCIAL INDICATORS REVENUE RUB 759.8 bln NET PROFIT (ADJUSTED*) RUB 74 bln * Adjusted net profit is calculated as net profit not taking into account impairment of available-for-sale investments, impairment of promissory notes, provision for impairment receivables and deferred income tax liabilities referred to them. www.rosseti.ru/eng ANNUAL REPORT 2013 OPERATING INDICATORS TRANSFORMER CAPACITY 743.6 GVA LENGTH OF POWER LINES 2,262 thousand kilometers ELECTRICITY DELIVERY ANNUAL 706 billion kWh NUMBER OF SUBSTATIONS REPORT 2013 REPORT 473 thousand units NUMBER OF EMPLOYEES 221.6 thousand people FINANCIAL INDICATORS REVENUE RUB 759.8 bln NET PROFIT (ADJUSTED*) RUB 74 bln * Adjusted net profit is calculated as net profit not taking into account impairment of available-for-sale investments, impairment of promissory notes, provision for impairment receivables and deferred income tax liabilities referred to them. www.rosseti.ru/eng ANNUAL REPORT 2013 ROSSETI ANNUAL REPORT 2013 CONTENT On-line version r13.rosseti.ru/en I. MAJOR INDICATORS 4 1.1. Company Overview 5 1.2. Russian Grids Mission 7 1.3. Message from the Chairman of the Russian Grids Board of Directors 8 1.4. Message from the General Director of the Russian Grids 10 2. RUSSIAN GRIDS IN ENERGY INDUSTRY 14 2.1. Russian Energy Industry 15 2.2. Electricity Tariffs 17 2.3. Our Achievements for the Industry and the Country. -
Trans-Baykal (Rusya) Bölgesi'nin Coğrafyasi
International Journal of Geography and Geography Education (IGGE) To Cite This Article: Can, R. R. (2021). Geography of the Trans-Baykal (Russia) region. International Journal of Geography and Geography Education (IGGE), 43, 365-385. Submitted: October 07, 2020 Revised: November 01, 2020 Accepted: November 16, 2020 GEOGRAPHY OF THE TRANS-BAYKAL (RUSSIA) REGION Trans-Baykal (Rusya) Bölgesi’nin Coğrafyası Reyhan Rafet CAN1 Öz Zabaykalskiy Kray (Bölge) olarak isimlendirilen saha adını Rus kâşiflerin ilk kez 1640’ta karşılaştıkları Daur halkından alır. Rusçada Zabaykalye, Balkal Gölü’nün doğusu anlamına gelir. Trans-Baykal Bölgesi, Sibirya'nın en güneydoğusunda, doğu Trans-Baykal'ın neredeyse tüm bölgesini işgal eder. Bölge şiddetli iklim koşulları; birçok mineral ve hammadde kaynağı; ormanların ve tarım arazilerinin varlığı ile karakterize edilir. Rusya Federasyonu'nun Uzakdoğu Federal Bölgesi’nin bir parçası olan on bir kurucu kuruluşu arasında bölge, alan açısından altıncı, nüfus açısından dördüncü, bölgesel ürün üretimi açısından (GRP) altıncı sıradadır. Bölge topraklarından geçen Trans-Sibirya Demiryolu yalnızca Uzak Doğu ile Rusya'nın batı bölgeleri arasında bir ulaşım bağlantısı değil, aynı zamanda Avrasya geçişini sağlayan küresel altyapının da bir parçasıdır. Bölgenin üretim yapısında sanayi, tarım ve ulaşım yüksek bir paya sahiptir. Bu çalışmada Trans-Baykal Bölgesi’nin fiziki, beşeri ve ekonomik coğrafya özellikleri ele alınmıştır. Trans-Baykal Bölgesinin coğrafi özelliklerinin yanı sıra, ekonomik ve kültürel yapısını incelenmiştir. Bu kapsamda konu ile ilgili kurumsal raporlardan ve alan araştırmalarından yararlanılmıştır. Bu çalışma sonucunda 350 yıldan beri Rus gelenek, kültür ve yaşam tarzının devam ettiği, farklı etnik grupların toplumsal birliği sağladığı, yer altı kaynaklarının bölge ekonomisi için yüzyıllardır olduğu gibi günümüzde de önem arz ettiği, coğrafyasının halkın yaşam şeklini belirdiği sonucuna varılmıştır. -
Emergency Measures to Save Baer's Pochard
Emergency measures to save Baer’s Pochard: location of breeding sites in Russia 1 By Diana Solovyeva Alexey Antonov Oleg Goroshko Vladimir Pronkevich, and Sergey Surmach Magadan, Russia December 2013 ghjghjghgjghj SUBMITTED TO: Partnership for the East Asian-Australasian Flyway 3F Bon-dong G-Tower, 175 Art center-daero (24-4 Songdo-dong), Yeonsu-gu, Incheon 406-840 Republic of Korea and Wildfowl and Wetlands Trust 2 Slimbridge, Glos GL2 7BT, United Kingdom SUBMITTED BY: (1) (2) (3) (4) DIANA SOLOVYEVA , ALEXEY ANTONOV , OLEG GOROSHKO , VLADIMIR PRONKEVICH AND (5) SERGEY SURMACH (1) Institute of Biological Problems of the North, Portovaya Str., 18, Magadan, 685000, Russia (2) Khinganskiy State Nature Biosphere Reserve, Arkhara, Russia (3) Daursky State Nature Biosphere Reserve, Chita, Russia (4) Institute of Water and Ecological Problems FEB RAS, Khabarovsk, Russia (5) NGO Amur-Ussuri Centre for Avian Biodiversity, Vladivostok, Russia To obtain copies of this report contact: Laboratory of Ornithology, Institute of Biological Problems of the North, Portovaya Str., 18, Magadan, 685000, Russia [email protected] FRONT PHOTO CAPTION: Baer’s Pochard Survey of Khanka Lake. Suggested citation: Solovyeva, D, A. Antonov, O. Goroshko, V. Pronkevich & S. Surmach. 2013. Emergency measures to save Baer’s Pochard: location of breeding sites in Russia. Unpublished report. Institute of Biological Problems of the North, Magadan: 18 pp. CONTENT INTRODUCTION . 4 AREAS SURVEYED AND SURVEY TIMING IN 2013 . 5 SURVEY METHODS . .6 RESULTS . .10 Baer’s Pochard registrations. .10 3 Leaflet distribution . 11 DISCUSSION . 12 Potential threats . 12 Acknowledgements . 13 Budget information. 14 Appendix A . .15 INTRODUCTION Baer’s Pochard Aythya baeri is a Critically Endangered migratory duck (BirdLife International 2013) that formerly bred across the Amur and Ussuri basins in Russia, although historical nest records only exist from Lake Khanka. -
List of Grain Elevators in Which Grain Will Be Deposited for Subsequent Shipment to China
List of grain elevators in which grain will be deposited for subsequent shipment to China Contact Infromation (phone № Name of elevators Location num. / email) Zabaykalsky Krai Rapeseed 1 ООО «Zabaykalagro» Zabaykalsku krai, Borzya, ul. Matrosova, 2 8-914-120-29-18 2 OOO «Zolotoy Kolosok» Zabaykalsky Krai, Nerchinsk, ul. Octyabrskaya, 128 30242-44948 3 OOO «Priargunskye prostory» Zabaykalsky Krai, Priargunsk ul. Urozhaynaya, 6 (924) 457-30-27 Zabaykalsky Krai, Priargunsky district, village Starotsuruhaytuy, Pertizan 89145160238, 89644638969, 4 LLS "PION" Shestakovich str., 3 [email protected] LLC "ZABAYKALSKYI 89144350888, 5 Zabaykalskyi krai, Chita city, Chkalova street, 149/1 AGROHOLDING" [email protected] Individual entrepreneur head of peasant 6 Zabaykalskyi krai, Chita city, st. Juravleva/home 74, apartment 88 89243877133, [email protected] farming Kalashnikov Uriy Sergeevich 89242727249, 89144700140, 7 OOO "ZABAYKALAGRO" Zabaykalsky krai, Chita city, Chkalova street, 147A, building 15 [email protected] Zabaykalsky krai, Priargunsky district, Staroturukhaitui village, 89245040356, 8 IP GKFH "Mungalov V.A." Tehnicheskaia street, house 4 [email protected] Corn 1 ООО «Zabaykalagro» Zabaykalsku krai, Borzya, ul. Matrosova, 2 8-914-120-29-18 2 OOO «Zolotoy Kolosok» Zabaykalsky Krai, Nerchinsk, ul. Octyabrskaya, 128 30242-44948 3 OOO «Priargunskye prostory» Zabaykalsky Krai, Priargunsk ul. Urozhaynaya, 6 (924) 457-30-27 Individual entrepreneur head of peasant 4 Zabaykalskyi krai, Chita city, st. Juravleva/home 74, apartment 88 89243877133, [email protected] farming Kalashnikov Uriy Sergeevich Rice 1 ООО «Zabaykalagro» Zabaykalsku krai, Borzya, ul. Matrosova, 2 8-914-120-29-18 2 OOO «Zolotoy Kolosok» Zabaykalsky Krai, Nerchinsk, ul. Octyabrskaya, 128 30242-44948 3 OOO «Priargunskye prostory» Zabaykalsky Krai, Priargunsk ul. -
Tissue Specific Regulatory Network Annotation for Non-Coding Elements
Quantitative Biology 2020, 8(1): 43–50 https://doi.org/10.1007/s40484-020-0195-4 RESEARCH ARTICLE ZokorDB: tissue specificregulatorynetwork annotation for non-coding elements of plateau zokor Jingxue Xin1,6,7,†, Junjun Hao2,†, Lang Chen1, Tao Zhang3, Lei Li1,5,7, Luonan Chen3,5, Wenmin Zhao4, Xuemei Lu2,5, Peng Shi2,5,*, Yong Wang1,5,7,* 1 CEMS, NCMIS, MDIS, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China 2 State Key Laboratory of Genetic Resources and Evolution, Laboratory of Evolutionary and Functional Genomics, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China 3 Key Laboratory of Systems Biology, Innovation Center for Cell Signaling Network, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China 4 Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 5 Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650223, China 6 Department of Statistics, Department of Biomedical Data Science, Bio-X Program, Stanford University, Stanford, CA 94305, USA 7 University of Chinese Academy of Sciences, Beijing 100049, China * Correspondence: [email protected], [email protected] Received September 4, 2019; Revised December 16, 2019; Accepted December 23, 2019 Background: Plateau zokor inhabits in sealed burrows from 2,000 to 4,200 meters at Qinghai-Tibet Plateau. This extreme living environment makes it a great model to study animal adaptation to hypoxia, low temperature, and high carbon dioxide concentration. Methods: We provide an integrated resource, ZokorDB, for tissue specific regulatory network annotation for zokor. -
Comparative Phylogeography of the Plateau Zokor (Eospalax Baileyi
Lin et al. BMC Evolutionary Biology 2014, 14:180 http://www.biomedcentral.com/1471-2148/14/180 RESEARCH ARTICLE Open Access Comparative phylogeography of the plateau zokor (Eospalax baileyi) and its host-associated flea (Neopsylla paranoma) in the Qinghai-Tibet Plateau Gonghua Lin1, Fang Zhao1,2, Hongjian Chen3, Xiaogong Deng1,2, Jianping Su1 and Tongzuo Zhang1* Abstract Background: Specific host-parasite systems often embody a particular co-distribution phenomenon, in which the parasite’s phylogeographic pattern is dependent on its host. In practice, however, both congruent and incongruent phylogeographic patterns between the host and the parasite have been reported. Here, we compared the population genetics of the plateau zokor (Eospalax baileyi), a subterranean rodent, and its host-associated flea species, Neopsylla paranoma, with an aim to determine whether the two animals share a similar phylogeographic pattern. Results: We sampled 130 host-parasite pairs from 17 localities in the Qinghai-Tibet Plateau (QTP), China, and sequenced a mitochondrial DNA (mtDNA) segment (~2,500 bp), including the complete COI and COII genes. We also detected 55 zokor and 75 flea haplotypes. AMOVA showed that the percentage of variation among the populations of zokors constituted 97.10%, while the within population variation was only 2.90%; for fleas, the values were 85.68% and 14.32%, respectively. Moreover, the flea Fst (fixation index) values were significantly smaller than in zokor. Although the Fst values between zokors and fleas were significantly and positively correlated (N =105, R =0.439, p =0.000), only a small amount (R2= 0.19) of the flea Fst variations could be explained by the zokor Fst variations.