Rodentia: Spalacidae) from Turkey with Consideration of Its Taxonomic Importance
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Blind Mole Rat (Spalax Leucodon) Masseter Muscle: Structure, Homology, Diversification and Nomenclature A
Folia Morphol. Vol. 78, No. 2, pp. 419–424 DOI: 10.5603/FM.a2018.0097 O R I G I N A L A R T I C L E Copyright © 2019 Via Medica ISSN 0015–5659 journals.viamedica.pl Blind mole rat (Spalax leucodon) masseter muscle: structure, homology, diversification and nomenclature A. Yoldas1, M. Demir1, R. İlgun2, M.O. Dayan3 1Department of Anatomy, Faculty of Medicine, Kahramanmaras University, Kahramanmaras, Turkey 2Department of Anatomy, Faculty of Veterinary Medicine, Aksaray University, Aksaray, Turkey 3Department of Anatomy, Faculty of Veterinary Medicine, Selcuk University, Konya, Turkey [Received: 10 July 2018; Accepted: 23 September 2018] Background: It is well known that rodents are defined by a unique masticatory apparatus. The present study describes the design and structure of the masseter muscle of the blind mole rat (Spalax leucodon). The blind mole rat, which emer- ged 5.3–3.4 million years ago during the Late Pliocene period, is a subterranean, hypoxia-tolerant and cancer-resistant rodent. Yet, despite these impressive cha- racteristics, no information exists on their masticatory musculature. Materials and methods: Fifteen adult blind mole rats were used in this study. Dissections were performed to investigate the anatomical characteristics of the masseter muscle. Results: The muscle was comprised of three different parts: the superficial mas- seter, the deep masseter and the zygomaticomandibularis muscle. The superficial masseter originated from the facial fossa at the ventral side of the infraorbital foramen. The deep masseter was separated into anterior and posterior parts. The anterior part of the zygomaticomandibularis muscle arose from the snout and passed through the infraorbital foramen to connect on the mandible. -
TAXONOMIC STUDIES from RODENT OUTBREAK AREAS in the CHITTAGONG HILL TRACTS Nikhil
Bangladesh J. Zool. 46(2): 217-230, 2018 ISSN: 0304-9027 (print) 2408-8455 (online) NEW RECORDS OF RODENT SPECIES IN BANGLADESH: TAXONOMIC STUDIES FROM RODENT OUTBREAK AREAS IN THE CHITTAGONG HILL TRACTS Nikhil Chakma*, Noor Jahan Sarker, Steven Belmain1, Sohrab Uddin Sarker, Ken Aplin2 and Sontosh Kumar Sarker3 Department of Zoology, University of Dhaka, Dhaka-1000, Bangladesh Abstract: Rodents are regarded as crop pests, significant reservoirs and vectors for many zoonotic diseases around the world. Basic taxonomic information of rodents present in a locality can help understand which species are responsible as crop pest in that habitat. The phenomenon of the 50-year cycle of gregarious bamboo flowering and rodent outbreaks in the Chittagong Hill Tracts (CHT) of Bangladesh, rodents trapping were carried out in four habitats from March, 2009 to December, 2011 in Ruma upazila of Bandarban hill district. Variety of traps were used to capture small mammals. The captured species were measured and identified using taxonomical dichotomous keys and DNA bar-coding performed in Australia. A total of 14 different small mammalian species were captured of which nine belonging to the Muridae family, and one species each of Spalacidae, Sciuridae, Tupaiidae and Soricidae families. The dominant small mammal species captured were Rattus rattus (54.06%) followed by Mus musculus (26.39%), Rattus nitidus (10.98%), Suncus murinus (5.45%), Mus terricolor (1.09%), Mus cookii nagarum (0.97%), Cannomys badius (0.16%), Leopoldamys edwardsi (0.12%), Berylmys bowersi (0.12%), Vernaya fulva (0.08%), Rattus andamanensis (0.08%), Tupaia glis (0.04%) and Callosciurus pygerythrus (0.04%). -
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Lin et al. BMC Genomics 2014, 15:32 http://www.biomedcentral.com/1471-2164/15/32 RESEARCH ARTICLE Open Access Transcriptome sequencing and phylogenomic resolution within Spalacidae (Rodentia) Gong-Hua Lin1, Kun Wang2, Xiao-Gong Deng1,3, Eviatar Nevo4, Fang Zhao1, Jian-Ping Su1, Song-Chang Guo1, Tong-Zuo Zhang1* and Huabin Zhao5* Abstract Background: Subterranean mammals have been of great interest for evolutionary biologists because of their highly specialized traits for the life underground. Owing to the convergence of morphological traits and the incongruence of molecular evidence, the phylogenetic relationships among three subfamilies Myospalacinae (zokors), Spalacinae (blind mole rats) and Rhizomyinae (bamboo rats) within the family Spalacidae remain unresolved. Here, we performed de novo transcriptome sequencing of four RNA-seq libraries prepared from brain and liver tissues of a plateau zokor (Eospalax baileyi) and a hoary bamboo rat (Rhizomys pruinosus), and analyzed the transcriptome sequences alongside a published transcriptome of the Middle East blind mole rat (Spalax galili). We characterize the transcriptome assemblies of the two spalacids, and recover the phylogeny of the three subfamilies using a phylogenomic approach. Results: Approximately 50.3 million clean reads from the zokor and 140.8 million clean reads from the bamboo ratwere generated by Illumina paired-end RNA-seq technology. All clean reads were assembled into 138,872 (the zokor) and 157,167 (the bamboo rat) unigenes, which were annotated by the public databases: the Swiss-prot, Trembl, NCBI non-redundant protein (NR), NCBI nucleotide sequence (NT), Gene Ontology (GO), Cluster of Orthologous Groups (COG), and Kyoto Encyclopedia of Genes and Genomes (KEGG). -
Checklist of Rodents and Insectivores of the Mordovia, Russia
ZooKeys 1004: 129–139 (2020) A peer-reviewed open-access journal doi: 10.3897/zookeys.1004.57359 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Checklist of rodents and insectivores of the Mordovia, Russia Alexey V. Andreychev1, Vyacheslav A. Kuznetsov1 1 Department of Zoology, National Research Mordovia State University, Bolshevistskaya Street, 68. 430005, Saransk, Russia Corresponding author: Alexey V. Andreychev ([email protected]) Academic editor: R. López-Antoñanzas | Received 7 August 2020 | Accepted 18 November 2020 | Published 16 December 2020 http://zoobank.org/C127F895-B27D-482E-AD2E-D8E4BDB9F332 Citation: Andreychev AV, Kuznetsov VA (2020) Checklist of rodents and insectivores of the Mordovia, Russia. ZooKeys 1004: 129–139. https://doi.org/10.3897/zookeys.1004.57359 Abstract A list of 40 species is presented of the rodents and insectivores collected during a 15-year period from the Republic of Mordovia. The dataset contains more than 24,000 records of rodent and insectivore species from 23 districts, including Saransk. A major part of the data set was obtained during expedition research and at the biological station. The work is based on the materials of our surveys of rodents and insectivo- rous mammals conducted in Mordovia using both trap lines and pitfall arrays using traditional methods. Keywords Insectivores, Mordovia, rodents, spatial distribution Introduction There is a need to review the species composition of rodents and insectivores in all regions of Russia, and the work by Tovpinets et al. (2020) on the Crimean Peninsula serves as an example of such research. Studies of rodent and insectivore diversity and distribution have a long history, but there are no lists for many regions of Russia of Copyright A.V. -
Two New Pliocene Hamsters (Cricetidae, Rodentia) from Southwestern Tibet (China), and Their Implications for Rodent Dispersal ‘Into Tibet’
Journal of Vertebrate Paleontology ISSN: 0272-4634 (Print) 1937-2809 (Online) Journal homepage: http://www.tandfonline.com/loi/ujvp20 Two new Pliocene hamsters (Cricetidae, Rodentia) from southwestern Tibet (China), and their implications for rodent dispersal ‘into Tibet’ Qiang Li, Thomas A. Stidham, Xijun Ni & Lüzhou Li To cite this article: Qiang Li, Thomas A. Stidham, Xijun Ni & Lüzhou Li (2017) Two new Pliocene hamsters (Cricetidae, Rodentia) from southwestern Tibet (China), and their implications for rodent dispersal ‘into Tibet’, Journal of Vertebrate Paleontology, 37:6, e1403443, DOI: 10.1080/02724634.2017.1403443 To link to this article: https://doi.org/10.1080/02724634.2017.1403443 View supplementary material Published online: 16 Feb 2018. Submit your article to this journal Article views: 30 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=ujvp20 Journal of Vertebrate Paleontology e1403443 (10 pages) Ó by the Society of Vertebrate Paleontology DOI: 10.1080/02724634.2017.1403443 ARTICLE TWO NEW PLIOCENE HAMSTERS (CRICETIDAE, RODENTIA) FROM SOUTHWESTERN TIBET (CHINA), AND THEIR IMPLICATIONS FOR RODENT DISPERSAL ‘INTO TIBET’ QIANG LI, *,1,2,3 THOMAS A. STIDHAM,1,3 XIJUN NI, 1,2,3 and LUZHOU€ LI 1,3 1Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China, [email protected]; -
Diversification of Muroid Rodents Driven by the Late Miocene Global Cooling Nelish Pradhan University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2018 Diversification Of Muroid Rodents Driven By The Late Miocene Global Cooling Nelish Pradhan University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Biochemistry, Biophysics, and Structural Biology Commons, Evolution Commons, and the Zoology Commons Recommended Citation Pradhan, Nelish, "Diversification Of Muroid Rodents Driven By The Late Miocene Global Cooling" (2018). Graduate College Dissertations and Theses. 907. https://scholarworks.uvm.edu/graddis/907 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. DIVERSIFICATION OF MUROID RODENTS DRIVEN BY THE LATE MIOCENE GLOBAL COOLING A Dissertation Presented by Nelish Pradhan to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Biology May, 2018 Defense Date: January 8, 2018 Dissertation Examination Committee: C. William Kilpatrick, Ph.D., Advisor David S. Barrington, Ph.D., Chairperson Ingi Agnarsson, Ph.D. Lori Stevens, Ph.D. Sara I. Helms Cahan, Ph.D. Cynthia J. Forehand, Ph.D., Dean of the Graduate College ABSTRACT Late Miocene, 8 to 6 million years ago (Ma), climatic changes brought about dramatic floral and faunal changes. Cooler and drier climates that prevailed in the Late Miocene led to expansion of grasslands and retreat of forests at a global scale. -
Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils Ryan Norris University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2009 Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils Ryan Norris University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Recommended Citation Norris, Ryan, "Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils" (2009). Graduate College Dissertations and Theses. 164. https://scholarworks.uvm.edu/graddis/164 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. PHYLOGENETIC RELATIONSHIPS AND DIVERGENCE TIMES IN RODENTS BASED ON BOTH GENES AND FOSSILS A Dissertation Presented by Ryan W. Norris to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Biology February, 2009 Accepted by the Faculty of the Graduate College, The University of Vermont, in partial fulfillment of the requirements for the degree of Doctor of Philosophy, specializing in Biology. Dissertation ~xaminationCommittee: w %amB( Advisor 6.William ~il~atrickph.~. Duane A. Schlitter, Ph.D. Chairperson Vice President for Research and Dean of Graduate Studies Date: October 24, 2008 Abstract Molecular and paleontological approaches have produced extremely different estimates for divergence times among orders of placental mammals and within rodents with molecular studies suggesting a much older date than fossils. We evaluated the conflict between the fossil record and molecular data and find a significant correlation between dates estimated by fossils and relative branch lengths, suggesting that molecular data agree with the fossil record regarding divergence times in rodents. -
Systematics, Distribution and Ecological Analysis of Rodents in Jordan
Systematics, distribution and ecological analysis of rodents in Jordan ZUHAIR S. AMR1,2, MOHAMMAD A. ABU BAKER3, MAZIN QUMSIYEH4 & EHAB EID5 1Department of Biology, Jordan University of Science and Technology, P. O. Box 3030, Irbid, Jordan. E-mail: [email protected] 2Corresponding author 2Enviromatics, Environmental Management and Consulting Company, Amman, Jordan, E- mail: [email protected] 3Palestine Museum of Natural History, Bethlehem University, Bethlehem, Palestine, E-mail: [email protected]. 4The Royal Marine Conservation Society of Jordan, Amman, Jordan, E-mail: [email protected] Abstract Distributional and ecological data were given to all rodents of Jordan. The rodent fauna of Jordan consists of 28 species with 20 genera in eight families (Cricetidae, Dipodidae, Gliridae, Hystricidae, Muridae, Myocastoridae, Sciuridae, and Spalacidae), including four introduced species. Keys for families and species were provided, along with diagnosis for each species and cranial illustrations for most species. Habitat preference and zoogeographic affinities of rodents in Jordan were analyzed, as well as their status and conservation. Threat categories and causes of threats on the rodents of Jordan were also analyzed. The distribution of rodents in Jordan represents a reflection of their global distribution ranges and habitat preferences. Species associated with the temperate forest of northern Jordan includes Sciurus anomalus and two wood mice, Apodemus mystacinus and A. flavicollis, while non-forested areas are represented by Nannospalax ehrenbergi and Microtus guentheri. Strict sand dwellers include Gerbillus cheesmani and G. gerbillus. Petrophiles associated with sandstone or black lava deserts are exemplified by Acomys russatus, A. r. lewsi, H. indica and S. calurus. Others including: Jaculus jaculus, G. -
A Classification of Recent Mammals
A CLASSIFICATION OF RECENT MAMMALS ClassifiCation Common name(s) ClassifiCation Common name(s) subclass Prototheria Order Scandentia (20 species) Order Monotremata (5 species) Family Tupaiidae...................Tree shrews Family Tachyglossidae ...........Echidnas, spiny anteaters Ptilocercidae ..................Pen-tailed tree shrew Ornithorhynchidae .........Duck-billed platypus Order Dermoptera (2 species) subclass theria Family Cynocephalidae .........Colugos Infraclass Metatheria (Marsupialia) Order Primates (376 species) Order Didelphimorphia (87 species) Family Cheirogaleidae ...........Dwarf lemurs Family Didelphidae ..............Opossums Lemuridae......................Lemurs Order Paucituberculata (6 species) Lepilemuridae ................Sportive lemurs Family Caenolestidae ............Rat opossums Indriidae ........................Wooly lemurs, sifakas, indri Order Microbiotheria (1 species) Daubentoniidae .............Aye-aye Family Microbiotheriidae ......Monito del monte, llaca Lorisidae ........................Lorises, pottos Order Notoryctemorphia (2 species) Galagidae .......................Bushbabies, Galagos Family Notoryctidae .............Marsupial “mole” Tarsiidae .........................Tarsiers Order Dasyuromorphia (71 species) Cebidae .........................New World monkeys Family Thylacinidae ..............Thylacine (extinct) Aotidae ..........................Night monkeys Myrmecobiidae ..............Numbat Pitheciidae .....................Titi, uracari, saki monkeys Dasyuridae .....................Dasyures, -
Exceptional Chromosomal Evolution and Cryptic Speciation of Blind Mole Rats Nannospalax Leucodon (Spalacinae, Rodentia) from South-Eastern Europe
Review Exceptional Chromosomal Evolution and Cryptic Speciation of Blind Mole Rats Nannospalax leucodon (Spalacinae, Rodentia) from South-Eastern Europe Ivo Savić 1, Duško Ćirović 1 and Vanja Bugarski-Stanojević 2,* 1 Biological Faculty, University of Belgrade, 11000 Belgrade, Serbia; [email protected] (I.S.); [email protected] (D.Ć.) 2 Institute for Biological Research “Siniša Stanković“, University of Belgrade, 11060 Belgrade, Serbia * Correspondence: [email protected]; Tel.: +381-11-207-8331 Received: 30 August 2017; Accepted: 17 October 2017; Published: 25 October 2017 Abstract: Mole rats are exclusively subterranean and highly specialized rodents. Their long lifespans, remarkable anti-cancer mechanisms, and various distinctive adaptive features make them a useful research model. Moreover, opposing convergence of morphological traits, they have developed extremely high karyotype variability. Thus, 74 chromosomal forms have been described so far and new ones are being revealed continuously. These evolved during the process of rapid radiation and occur in different biogeographical regions. During research into their reproductive biology we have already provided substantial evidence for species-level separation of these taxa. Here, we review diverse chromosomal forms of the lesser blind mole rat, Mediterranean Nannospalax leucodon, distributed in South-eastern Europe, their karyotype records, biogeography, origin, and phylogeny from our extensive research. In the light of new data from molecular genetic studies, we question some former valuations and propose a cryptospecies rank for seven reproductively isolated chromosomal forms with sympatric and parapatric distribution and clear ecogeographical discrepances in their habitats, as well as new experimental and theoretical methods for understanding the courses of speciation of these unique fossorial mammals. -
And NOR Stained Karyotypes of Mole Rat, Nannospalax Xanthodon (2N = 54) from Kırıkkale, Turkey
A. ARSLAN, K. TOYRAN, S. GÖZÜTOK, T. YORULMAZ Turk J Biol 35 (2011) 655-661 © TÜBİTAK doi:10.3906/biy-1011-2 C- and NOR stained karyotypes of mole rat, Nannospalax xanthodon (2n = 54) from Kırıkkale, Turkey Atilla ARSLAN1, Kubilay TOYRAN2, Serdar GÖZÜTOK3, Tarkan YORULMAZ4 1Department of Biology, Faculty of Science, Selçuk University, 42031 Konya - TURKEY 2Department of Biology, Faculty of Science and Arts, Bitlis Eren University, 13000 Bitlis - TURKEY 3Department of Biology, Faculty of Science and Arts, Kırıkkale University, 71450 Kırıkkale - TURKEY 4Department of Biology, Faculty of Science, Çankırı Karatekin University, Çankırı - TURKEY Received: 02.11.2010 Abstract: In the present study, the 2n = 54 chromosomal race of blind mole rats, Nannospalax xanthodon superspecies, from Kırıkkale Province in Turkey was investigated. Conventional chromosome staining, Ag-NOR (Nucleolus Organizer Region) staining, and C-banding analysis were carried out on specimens of mole rats. Th e karyotype including 3 metacentric pairs (nos. 1-3), 3 submetacentric pairs (nos. 4-6), 3 subtelocentric pairs (nos. 7-9), and 17 acrocentric pairs (nos. 10-26) of autosomes (NFa = 70). C-heterochromatin regions were found in the centromeric and pericentromeric region and the short arms of some bi-armed autosomal pairs, and C-heterochromatin was localized in pericentromeric areas of a few acrocentric autosomes. Th e X chromosome has a centromeric C-positive band and the Y chromosome appeared to be uniformly and C-negatively stained. In all of the specimens studied the NORs were localized in distal heterochromatin areas of the short arms of 4 pairs (nos. 4, 5, 8, 9) of biarmed autosomes. -
A Comparative Genomics Multitool for Scientific Discovery and Conservation
Analysis https://doi.org/10.1038/s41586-020-2876-6 Supplementary information A comparative genomics multitool for scientific discovery and conservation In the format provided by the authors and unedited Nature | www.nature.com/nature Supplementary Table 1 Supplementary Table 1. Genome assembly statistics for all attemped and successful Zoonomia Project genomes. Of 173 species and subspecies initially planned for inclusion in the Zoonomia Project, genome assemblies have been generated and released for 132. For the remainder, acquisition of high quality samples was a major impediment. Set A: Discovar only genomes; Set B: Genomes upgraded to longer contiguity; Set C: Assembly failed; Set D: Sample failed QC; Set E: Sample not found; ** Genome assembly statistics output by DISCOVAR de novo. All samples were collected and shipped in compliance with the applicable regulations for sample collection, transfer, export and import. Contig Size (Gb; Mean Busco BUSCO Provider Provider Sequencing N50 (bp) Scaffold contigs base Complete Single BUSCO BUSCO BUSCO Set Species Common Name Order Family IUCN Biosample Institution contact location Genbank accession ** N50 (bp)** >1kb)** quality** Coverage** (n=4104) Copy Duplicated Fragmented Missing Liverpool Solenodon Hispaniolan School of Nicholas Uppsala A Eulipotyphla Solenodontidae Endangered SAMN07678062 GCA_004363575.1 244,273 422,311 2.05 35.8 29.3 90.4% 90.1% 0.3% 6.9% 2.7% paradoxus solenodon Tropical Casewell University Medicine Crocidura Indochinese University of Kevin Uppsala A Eulipotyphla