LIN-12/Notch Signaling: Lessons from Worms and Flies
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Functional Analysis of the Homeobox Gene Tur-2 During Mouse Embryogenesis
Functional Analysis of The Homeobox Gene Tur-2 During Mouse Embryogenesis Shao Jun Tang A thesis submitted in conformity with the requirements for the Degree of Doctor of Philosophy Graduate Department of Molecular and Medical Genetics University of Toronto March, 1998 Copyright by Shao Jun Tang (1998) National Library Bibriothèque nationale du Canada Acquisitions and Acquisitions et Bibiiographic Services seMces bibliographiques 395 Wellington Street 395, rue Weifington OtbawaON K1AW OttawaON KYAON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence alIowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distri%uteor sell reproduire, prêter' distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Functional Analysis of The Homeobox Gene TLr-2 During Mouse Embryogenesis Doctor of Philosophy (1998) Shao Jun Tang Graduate Department of Moiecular and Medicd Genetics University of Toronto Abstract This thesis describes the clonhg of the TLx-2 homeobox gene, the determination of its developmental expression, the characterization of its fiuiction in mouse mesodem and penpheral nervous system (PNS) developrnent, the regulation of nx-2 expression in the early mouse embryo by BMP signalling, and the modulation of the function of nX-2 protein by the 14-3-3 signalling protein during neural development. -
Spatial Regulation and Generation of Diversity in Signaling Pathways
J Biosci (2021)46:30 Ó Indian Academy of Sciences DOI: 10.1007/s12038-021-00150-w (0123456789().,-volV)(0123456789().,-volV) Review Spatial regulation and generation of diversity in signaling pathways 1,2 1 NEETU SAINI and APURVA SARIN * 1Institute for Stem Cell Science and Regenerative Medicine, Bellary Road, Bengaluru 560 065, India 2Department of Biology, Manipal Academy of Higher Education, Manipal, India *Corresponding author (Email, [email protected]) MS received 9 November 2020; accepted 19 February 2021 Signaling pathways orchestrate diverse cellular outcomes in the same tissue, spatially and temporally. These interactions, which are played out in micro-environments within cells and involve a relatively small number of core pathways, are the key to the development and function of multi-cellular organisms. How these outcomes are regulated has prompted interest in intracellular mechanisms that build diversity in signaling outcomes. This review specifically addresses spatial positioning of molecules as a means of enabling interactions and novel outcomes of signaling cascades. Using the Notch and Ras pathways as exemplars, we describe mechanisms that contribute to diverse signaling outcomes. Keywords. Cross-talk; notch; signaling; spatial regulation 1. Introduction and Blair 1999; Baonza and Garcia-Bellido 2000; Becam et al. 2011), and in the lymph gland, the dif- Cell-to-cell communication is critical for the develop- ferentiation and survival of crystal cells (Duvic et al. ment and maintenance of multi-cellular organisms. 2002). In the PC12 neuronal cell line, activation of Development or repair following injury, requires receptor tyrosine kinase (RTK) in response to nerve interactions between many cell types for specific of cell growth factor (NGF) and epidermal growth factor fates, and breakdown or errors in these can lead to (EGF) regulates differentiation and proliferation various disorders or pathophysiological conditions respectively. -
Tyrosine Phosphorylation and Proteolytic Cleavage of Notch Are
© 2018. Published by The Company of Biologists Ltd | Development (2018) 145, dev151548. doi:10.1242/dev.151548 RESEARCH ARTICLE Tyrosine phosphorylation and proteolytic cleavage of Notch are required for non-canonical Notch/Abl signaling in Drosophila axon guidance Ramakrishnan Kannan1,*, Eric Cox1,‡, Lei Wang2,§, Irina Kuzina1,QunGu1 and Edward Giniger1,2,¶ ABSTRACT 2005) and the Akt pathway (Androutsellis-Theotokis et al., 2006; Notch signaling is required for the development and physiology of Perumalsamy et al., 2009), among others, that extend the menu of nearly every tissue in metazoans. Much of Notch signaling is molecular outcomes of Notch activation. The molecular events mediated by transcriptional regulation of downstream target genes, behind these alternative signaling mechanisms, however, are not well but Notch controls axon patterning in Drosophila by local modulation understood. of Abl tyrosine kinase signaling, via direct interactions with the Abl co- Perhaps the best-studied non-traditional function of Notch is its factors Disabled and Trio. Here, we show that Notch-Abl axonal regulation of axon patterning (comprising both axon growth and signaling requires both of the proteolytic cleavage events that initiate axon guidance) via interaction with the Abl tyrosine kinase canonical Notch signaling. We further show that some Notch protein signaling network (Crowner et al., 2003; Giniger, 1998; Kuzina is tyrosine phosphorylated in Drosophila, that this form of the protein et al., 2011; Le Gall et al., 2008). It has been demonstrated is selectively associated with Disabled and Trio, and that relevant biochemically, molecularly and genetically that, upon activation by tyrosines are essential for Notch-dependent axon patterning but not its ligand Delta, Notch promotes the growth and guidance of pioneer for canonical Notch-dependent regulation of cell fate. -
It's T-ALL About Notch
Oncogene (2008) 27, 5082–5091 & 2008 Macmillan Publishers Limited All rights reserved 0950-9232/08 $30.00 www.nature.com/onc REVIEW It’s T-ALL about Notch RM Demarest1, F Ratti1 and AJ Capobianco Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA, USA T-cell acute lymphoblastic leukemia (T-ALL) is an about T-ALL make it a more aggressive disease with a aggressive subset ofALL with poor clinical outcome poorer clinical outcome than B-ALL. T-ALL patients compared to B-ALL. Therefore, to improve treatment, it have a higher percentage of induction failure, and rate is imperative to delineate the molecular blueprint ofthis of relapse and invasion into the central nervous system disease. This review describes the central role that the (reviewed in Aifantis et al., 2008). The challenge to Notch pathway plays in T-ALL development. We also acquiring 100% remission in T-ALL treatment is the discuss the interactions between Notch and the tumor subset of patients (20–25%) whose disease is refractory suppressors Ikaros and p53. Loss ofIkaros, a direct to initial treatments or relapses after a short remission repressor ofNotch target genes, and suppression ofp53- period due to drug resistance. Therefore, it is imperative mediated apoptosis are essential for development of this to delineate the molecular blueprint that collectively neoplasm. In addition to the activating mutations of accounts for the variety of subtypes in T-ALL. This will Notch previously described, this review will outline allow for the development of targeted therapies that combinations ofmutations in pathways that contribute inhibit T-ALL growth by disrupting the critical path- to Notch signaling and appear to drive T-ALL develop- ways responsible for the neoplasm. -
Products for Morphogen Research
R&D Systems Tools for Cell Biology Research™ Products for Morphogen Research BMP-4 NEURAL PLATE BMP-7 PROSPECTIVE NEURAL CREST NON-NEURAL ECTODERM Noggin Shh Noggin PRESOMITIC MESODERM NOTOCHORD NON-NEURAL ECTODERM FUTURE FLOOR PLATE BMP-4 Shh Noggin DORSAL AORTA ROOF PLATE Products for Morphogen Research for Products Noggin Wnt-1 Wnt-3a Wnt-4 NT-3 Wnt-6 Wnt-7a EARLY SOMITE Myf5 NEURAL TUBE Pax3 Sim1 BMP-4 INTERMEDIATE MESODERM Shh ShhShh NogginNoggin BMP-4 DORSAL AORTA Ihh NOTOCHORD MORPHOGENS Morphogens are molecules that regulate cell fate during development. Formation of morphogen concentration gradients directs the biological responses of surrounding cells. Graded responses occur as a result of morphogens binding to specific cell surface receptors that subsequently activate intracellular signaling pathways and promote or repress gene expression at specific threshold concentrations. Activation or inactivation of these signaling pathways provides positional information that ultimately determines tissue organization and morphology. Research in model organisms has revealed that morphogens are involved in many aspects of development. For example, morphogens are required in Drosophila for patterning of the dorso-ventral and anterior-posterior axes, segment patterning, and positional signaling in the leg and wing imaginal discs. Proteins belonging to the Wingless/Wnt, Notch, Hedgehog, and TGF-b families have been identified as morphogens that direct a number of these processes. Research in higher organisms has demonstrated that homologues of these same signaling molecules regulate vertebrate axis formation, anterior/posterior polarity during limb development, mesoderm patterning, and numerous other processes that establish an organism’s basic body structure. R&D Systems offers a wide selection of proteins, antibodies, and ELISAs for morphogen-related developmental research. -
The Transcriptional Activator PAX3–FKHR
Downloaded from genesdev.cshlp.org on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press The transcriptional activator PAX3–FKHR rescues the defects of Pax3 mutant mice but induces a myogenic gain-of-function phenotype with ligand-independent activation of Met signaling in vivo Frédéric Relaix,1 Mariarosa Polimeni,2 Didier Rocancourt,1 Carola Ponzetto,3 Beat W. Schäfer,4 and Margaret Buckingham1,5 1CNRS URA 2375, Department of Developmental Biology, Pasteur Institute, 75724 Paris Cedex 15, France; 2Department of Experimental Medicine, Section of Anatomy, University of Pavia, 27100 Pavia, Italy; 3Department of Anatomy, Pharmacology and Forensic Medicine, University of Turin, 10126 Turin, Italy; 4Division of Clinical Chemistry and Biochemistry, Department of Pediatrics, University of Zurich, CH-8032 Zurich, Switzerland Pax3 is a key transcription factor implicated in development and human disease. To dissect the role of Pax3 in myogenesis and establish whether it is a repressor or activator, we generated loss- and gain-of-function alleles by targeting an nLacZ reporter and a sequence encoding the oncogenic fusion protein PAX3–FKHR into the Pax3 locus. Rescue of the Pax3 mutant phenotypes by PAX3–FKHR suggests that Pax3 acts as a transcriptional activator during embryogenesis. This is confirmed by a Pax reporter mouse. However, mice expressing PAX3–FKHR display developmental defects, including ectopic delamination and inappropriate migration of muscle precursor cells. These events result from overexpression of c-met, leading to constitutive activation of Met signaling, despite the absence of the ligand SF/HGF. Haploinsufficiency of c-met rescues this phenotype, confirming the direct genetic link with Pax3. The gain-of-function phenotype is also characterized by overactivation of MyoD. -
Rapid Changes in Morphogen Concentration Control Self-Organized
RESEARCH COMMUNICATION Rapid changes in morphogen concentration control self-organized patterning in human embryonic stem cells Idse Heemskerk1†, Kari Burt1, Matthew Miller1, Sapna Chhabra2, M Cecilia Guerra1, Lizhong Liu1, Aryeh Warmflash1,3* 1Department of Biosciences, Rice University, Houston, United States; 2Systems, Synthetic and Physical Biology Program, Rice University, Houston, United States; 3Department of Bioengineering, Rice University, Houston, United States Abstract During embryonic development, diffusible signaling molecules called morphogens are thought to determine cell fates in a concentration-dependent way. Yet, in mammalian embryos, concentrations change rapidly compared to the time for making cell fate decisions. Here, we use human embryonic stem cells (hESCs) to address how changing morphogen levels influence differentiation, focusing on how BMP4 and Nodal signaling govern the cell-fate decisions associated with gastrulation. We show that BMP4 response is concentration dependent, but that expression of many Nodal targets depends on rate of concentration change. Moreover, in a self- organized stem cell model for human gastrulation, expression of these genes follows rapid changes in endogenous Nodal signaling. Our study shows a striking contrast between the specific ways ligand dynamics are interpreted by two closely related signaling pathways, highlighting both the *For correspondence: subtlety and importance of morphogen dynamics for understanding mammalian embryogenesis [email protected] and designing optimized protocols for directed stem cell differentiation. Editorial note: This article has been through an editorial process in which the authors decide how † Present address: Department to respond to the issues raised during peer review. The Reviewing Editor’s assessment is that all of Cell and Developmental the issues have been addressed (see decision letter). -
Annominer Is a New Web-Tool to Integrate Epigenetics, Transcription
www.nature.com/scientificreports OPEN AnnoMiner is a new web‑tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators Arno Meiler1,3, Fabio Marchiano2,3, Margaux Haering2, Manuela Weitkunat1, Frank Schnorrer1,2 & Bianca H. Habermann1,2* Gene expression regulation requires precise transcriptional programs, led by transcription factors in combination with epigenetic events. Recent advances in epigenomic and transcriptomic techniques provided insight into diferent gene regulation mechanisms. However, to date it remains challenging to understand how combinations of transcription factors together with epigenetic events control cell‑type specifc gene expression. We have developed the AnnoMiner web‑server, an innovative and fexible tool to annotate and integrate epigenetic, and transcription factor occupancy data. First, AnnoMiner annotates user‑provided peaks with gene features. Second, AnnoMiner can integrate genome binding data from two diferent transcriptional regulators together with gene features. Third, AnnoMiner ofers to explore the transcriptional deregulation of genes nearby, or within a specifed genomic region surrounding a user‑provided peak. AnnoMiner’s fourth function performs transcription factor or histone modifcation enrichment analysis for user‑provided gene lists by utilizing hundreds of public, high‑quality datasets from ENCODE for the model organisms human, mouse, Drosophila and C. elegans. Thus, AnnoMiner can predict transcriptional regulators for a studied -
Suppression of Notch Signaling Stimulates Progesterone Synthesis by Enhancing the Expression of NR5A2 and NR2F2 in Porcine Granulosa Cells
G C A T T A C G G C A T genes Article Suppression of Notch Signaling Stimulates Progesterone Synthesis by Enhancing the Expression of NR5A2 and NR2F2 in Porcine Granulosa Cells Rihong Guo 1,2, Fang Chen 2 and Zhendan Shi 1,2,* 1 Jiangsu Key Laboratory for Food Quality and Safety-State Key Laboratory Cultivation Base of Ministry of Science and Technology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; [email protected] 2 Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; [email protected] * Correspondence: [email protected] Received: 16 December 2019; Accepted: 18 January 2020; Published: 22 January 2020 Abstract: The conserved Notch pathway is reported to be involved in progesterone synthesis and secretion; however, the exact effects remain controversial. To determine the role and potential mechanisms of the Notch signaling pathway in progesterone biosynthesis in porcine granulosa cells (pGCs), we first used a pharmacological γ-secretase inhibitor, N-(N-(3,5-difluorophenacetyl-l-alanyl))-S-phenylglycine t-butyl ester (DAPT), to block the Notch pathway in cultured pGCs and then evaluated the expression of genes in the progesterone biosynthesis pathway and key transcription factors (TFs) regulating steroidogenesis. We found that DAPT dose- and time-dependently increased progesterone secretion. The expression of steroidogenic proteins NPC1 and StAR and two TFs, NR5A2 and NR2F2, was significantly upregulated, while the expression of HSD3B was significantly downregulated. Furthermore, knockdown of both NR5A2 and NR2F2 with specific siRNAs blocked the upregulatory effects of DAPT on progesterone secretion and reversed the effects of DAPT on the expression of NPC1, StAR, and HSD3B. -
Genomic Targeting of Epigenetic Probes Using a Chemically Tailored Cas9 System
Genomic targeting of epigenetic probes using a chemically tailored Cas9 system Glen P. Liszczaka, Zachary Z. Browna, Samuel H. Kima, Rob C. Oslunda, Yael Davida, and Tom W. Muira,1 aDepartment of Chemistry, Princeton University, Princeton, NJ 08544 Edited by James A. Wells, University of California, San Francisco, CA, and approved December 13, 2016 (received for review September 20, 2016) Recent advances in the field of programmable DNA-binding proteins Here, we report a method that combines the versatility of have led to the development of facile methods for genomic pharmacologic manipulation with the specificity of a genetically localization of genetically encodable entities. Despite the extensive programmable DNA-binding protein. Our strategy uses a utility of these tools, locus-specific delivery of synthetic molecules chemically tailored dCas9 to display a pharmacologic agent at a remains limited by a lack of adequate technologies. Here we combine genetic locus of interest in live mammalian cells (Fig. 1). This is trans the flexibility of chemical synthesis with the specificity of a pro- accomplished using split intein-mediated protein -splicing grammable DNA-binding protein by using protein trans-splicing to (PTS) to site-specifically link a recombinant dCas9:guide RNA ligate synthetic elements to a nuclease-deficient Cas9 (dCas9) (gRNA) complex to the synthetic cargo of choice (22). Indeed, in vitro and subsequently deliver the dCas9 cargo to live cells. we show that the remarkable specificity, efficiency, and speed of PTS allow the direct generation of desired dCas9 conjugates The versatility of this technology is demonstrated by delivering within the cell culture media, thereby facilitating a streamlined dCas9 fusions that include either the small-molecule bromodomain “one-pot” approach for genomic targeting of the reaction product. -
Delta-Notch Signaling: the Long and the Short of a Neuron’S Influence on Progenitor Fates
Journal of Developmental Biology Review Delta-Notch Signaling: The Long and the Short of a Neuron’s Influence on Progenitor Fates Rachel Moore 1,* and Paula Alexandre 2,* 1 Centre for Developmental Neurobiology, King’s College London, London SE1 1UL, UK 2 Developmental Biology and Cancer, University College London Great Ormond Street Institute of Child Health, London WC1N 1EH, UK * Correspondence: [email protected] (R.M.); [email protected] (P.A.) Received: 18 February 2020; Accepted: 24 March 2020; Published: 26 March 2020 Abstract: Maintenance of the neural progenitor pool during embryonic development is essential to promote growth of the central nervous system (CNS). The CNS is initially formed by tightly compacted proliferative neuroepithelial cells that later acquire radial glial characteristics and continue to divide at the ventricular (apical) and pial (basal) surface of the neuroepithelium to generate neurons. While neural progenitors such as neuroepithelial cells and apical radial glia form strong connections with their neighbours at the apical and basal surfaces of the neuroepithelium, neurons usually form the mantle layer at the basal surface. This review will discuss the existing evidence that supports a role for neurons, from early stages of differentiation, in promoting progenitor cell fates in the vertebrates CNS, maintaining tissue homeostasis and regulating spatiotemporal patterning of neuronal differentiation through Delta-Notch signalling. Keywords: neuron; neurogenesis; neuronal apical detachment; asymmetric division; notch; delta; long and short range lateral inhibition 1. Introduction During the development of the central nervous system (CNS), neurons derive from neural progenitors and the Delta-Notch signaling pathway plays a major role in these cell fate decisions [1–4]. -
Notch Signaling: Simplicity in Design, Versatility in Function Emma R
REVIEW 3593 Development 138, 3593-3612 (2011) doi:10.1242/dev.063610 © 2011. Published by The Company of Biologists Ltd Notch signaling: simplicity in design, versatility in function Emma R. Andersson1, Rickard Sandberg2 and Urban Lendahl1,* Summary different cell types and organs have recently been reviewed (Liu et Notch signaling is evolutionarily conserved and operates in al., 2010) and are summarized in Table 1. In keeping with its many cell types and at various stages during development. important role in many cell types, the mutation of Notch genes Notch signaling must therefore be able to generate leads to diseases in various organs and tissues (Table 2). These appropriate signaling outputs in a variety of cellular contexts. studies highlight the fact that the Notch pathway must be able to This need for versatility in Notch signaling is in apparent elicit appropriate responses in many spatially and temporally contrast to the simple molecular design of the core pathway. distinct cell contexts. Here, we review recent studies in nematodes, Drosophila and In this review, we address the conundrum of how this functional vertebrate systems that begin to shed light on how versatility diversity is compatible with the simplistic molecular design of the in Notch signaling output is generated, how signal strength is Notch signaling pathway. In particular, we focus on recent modulated, and how cross-talk between the Notch pathway observations, in both vertebrate and invertebrate systems, that and other intracellular signaling systems, such as the Wnt, begin to shed light on how diversity is generated at different steps hypoxia and BMP pathways, contributes to signaling diversity.