An Unaccounted Fraction of Marine Biogenic Caco3 Particles
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The Crazy Calcium Cycle. Eduardo A. Espeso Department of Cellular And
The CRaZy calcium cycle. Eduardo A. Espeso Department of Cellular and Molecular Biology Centro de Investigaciones Biológicas, CSIC. Ramiro de Maeztu, 9. 28040-Madrid. Spain. Key words: Crz1, calcineurin signaling, calcium pump, calcium channel, P-type ATPase, magnesium homeostasis Summary. Calcium is an essential cation for a cell. This cation participates in the regulation of numerous processes in either prokaryote s or eukaryotes, from bacteria to humans. Saccharomyces cerevisiae has served as a model organism to understand calcium homeostasis and calcium-dependent signaling in fungi. In this chapter it will be reviewed known and predicted transport mechanisms that mediate calcium homeostasis in the yeast. How and when calcium enters the cell, how and where it is stored, when is reutilized, and finally secreted to the environment to close the cycle. As a second messenger, maintenance of a controlled free intracellular calcium concentration is important for mediating transcriptional regulation. Many environmental stimuli modify the concentration of cytoplasmic free calcium generating the "calcium signal". This is sensed and transduced through the calmodulin/calcineurin pathway to a transcription factor, named c alcineurin-r esponsive z inc finger, CRZ, also known as "crazy" , to mediate transcriptional regulation of a large number of genes of diverse pathways including a negative feedback regulation of the calcium homeostasis system. A model of calcium regulation in yeasts In higher eukaryotes entry of calcium in the cell starts concatenated signaling events some of them are of enormous importance in animals such as initiation of the heartbeat or the synapses between neurons. In the budding yeast calcium mediates adaptation to a variety of stimuli such as the presence of mating pheromones (Iida et al., 1990), a damage to endoplasmic reticulum (Bonilla and Cunningham, 2003), and different ambient stresses like salinity, alkaline pH or high osmolarity [reviewed in (Cunningham, 2005)]. -
Non-Aqueous Formation of the Calcium Carbonate Polymorph Vaterite: Astrophysical Implications Sarah J
Astronomy & Astrophysics manuscript no. vaterite_FINAL c ESO 2021 August 9, 2021 Non-aqueous formation of the calcium carbonate polymorph vaterite: astrophysical implications Sarah J. Day1;2, Stephen P. Thompson2, Julia E. Parker2, and Aneurin Evans1 1 Astrophysics Group, Keele University, Keele, Staffordshire, UK, ST5 5BG 2 Diamond Light Source, Harwell Science and Innovation Campus, Chilton, Didcot, Oxon OX11 0QX Preprint online version: August 9, 2021 ABSTRACT Aims. To study the formation of calcium carbonate, through the solid-gas interaction of amorphous Ca-silicate with gaseous CO2, at elevated pressures, and link this to the possible presence of calcium carbonate in a number of circum- stellar and planetary environments. Methods. We use in-situ synchrotron X-Ray powder diffraction to obtain detailed structural data pertaining to the formation of the crystalline calcium carbonate phase vaterite and its evolution with temperature. Results. We found that the metastable calcium carbonate phase vaterite was formed alongside calcite, at elevated CO2 pressure, at room temperature and subsequently remained stable over a large range of temperature and pressure. Conclusions. We report the formation of the calcium carbonate mineral vaterite whilst attempting to simulate carbon- ate dust grain formation in astrophysical environments. This suggests that vaterite could be a mineral component of carbonate dust and also presents a possible method of formation for vaterite and its polymorphs on planetary surfaces. Key words. Astrochemistry | ISM: dust | Methods: laboratory | Planets and satellites: surfaces 1. Introduction NGC6537. They argue that the carbonates in these envi- ronments require formation by non-aqueous routes, such 1.1. Carbonates in astrophysical environments as gas-phase condensation or processes on grain surfaces. -
The Calcium Cycle
Curriculum Units by Fellows of the Yale-New Haven Teachers Institute 1985 Volume VII: Skeletal Materials- Biomineralization The Calcium Cycle Curriculum Unit 85.07.08 by Bill Duesing INTRODUCTION This unit is designed to be part of the Ecology course which is taught by High School in the Community at the West Rock Nature Center for four hours a day during the last quarter of the school year, The present ecology course involves both theoretical and practical studies relating to the earth and how it works. We will trace calcium in the biosphere from its location in igneous rocks in the early history of the earth to its location in the skeletons of high school students at the Nature Center. In the process of studying the transport and deposition of calcium we have a vehicle which touches on many of the important concepts we are teaching and relates to some of the hands-on activities the students are involved in. Some of the connections between the calcium cycle and the Ecology course are: Geology: Many of the students have no idea of the age and history of the earth and the great changes which it has gone through. How the calcium stored in the rocks in northwestern Connecticut came to be there touches on much of this chemistry: Most of the students have had very little exposure to chemistry, yet it is important in the study of ecology. Using the study of calcium, some simple chemical principles can be introduced such as the fact that calcium is intimately associated with carbon dioxide (CO2), as the solid calcium carbonate (CaCO3), and therefore is involved with life and life forms. -
Infrare D Transmission Spectra of Carbonate Minerals
Infrare d Transmission Spectra of Carbonate Mineral s THE NATURAL HISTORY MUSEUM Infrare d Transmission Spectra of Carbonate Mineral s G. C. Jones Department of Mineralogy The Natural History Museum London, UK and B. Jackson Department of Geology Royal Museum of Scotland Edinburgh, UK A collaborative project of The Natural History Museum and National Museums of Scotland E3 SPRINGER-SCIENCE+BUSINESS MEDIA, B.V. Firs t editio n 1 993 © 1993 Springer Science+Business Media Dordrecht Originally published by Chapman & Hall in 1993 Softcover reprint of the hardcover 1st edition 1993 Typese t at the Natura l Histor y Museu m ISBN 978-94-010-4940-5 ISBN 978-94-011-2120-0 (eBook) DOI 10.1007/978-94-011-2120-0 Apar t fro m any fair dealin g for the purpose s of researc h or privat e study , or criticis m or review , as permitte d unde r the UK Copyrigh t Design s and Patent s Act , 1988, thi s publicatio n may not be reproduced , stored , or transmitted , in any for m or by any means , withou t the prio r permissio n in writin g of the publishers , or in the case of reprographi c reproductio n onl y in accordanc e wit h the term s of the licence s issue d by the Copyrigh t Licensin g Agenc y in the UK, or in accordanc e wit h the term s of licence s issue d by the appropriat e Reproductio n Right s Organizatio n outsid e the UK. Enquirie s concernin g reproductio n outsid e the term s state d here shoul d be sent to the publisher s at the Londo n addres s printe d on thi s page. -
Synthesis Methods and Favorable Conditions for Spherical Vaterite Precipitation: a Review
crystals Review Synthesis Methods and Favorable Conditions for Spherical Vaterite Precipitation: A Review Donata Konopacka-Łyskawa Department of Process Engineering and Chemical Technology, Faculty of Chemistry, Gda´nskUniversity of Technology, Narutowicza 11/12, 80-233 Gda´nsk,Poland; [email protected]; Tel.: +48-58-347-2910 Received: 15 March 2019; Accepted: 18 April 2019; Published: 25 April 2019 Abstract: Vaterite is the least thermodynamically stable anhydrous calcium carbonate polymorph. Its existence is very rare in nature, e.g., in some rock formations or as a component of biominerals produced by some fishes, crustaceans, or birds. Synthetic vaterite particles are proposed as carriers of active substances in medicines, additives in cosmetic preparations as well as adsorbents. Also, their utilization as a pump for microfluidic flow is also tested. In particular, vaterite particles produced as polycrystalline spheres have large potential for application. Various methods are proposed to precipitate vaterite particles, including the conventional solution-solution synthesis, gas-liquid method as well as special routes. Precipitation conditions should be carefully selected to obtain a high concentration of vaterite in all these methods. In this review, classical and new methods used for vaterite precipitation are presented. Furthermore, the key parameters affecting the formation of spherical vaterite are discussed. Keywords: vaterite; calcium carbonate; polymorph; precipitation; synthesis; carbonation 1. Introduction Vaterite is the least thermodynamically stable anhydrous calcium carbonate polymorph and it easily transforms into more stable calcite or aragonite in the presence of water. This form of calcium carbonate mineral was named to honor the German chemist and mineralogist, Heinrich Vater, in 1903. -
Aragonite Formation in Confinements: a Step Toward Understanding Polymorph Control COMMENTARY Yifei Xua,B,C and Nico A
COMMENTARY Aragonite formation in confinements: A step toward understanding polymorph control COMMENTARY Yifei Xua,b,c and Nico A. J. M. Sommerdijka,b,c,1 Calcium carbonate (CaCO3) is one of the most com- unclear but were generally attributed to the interac- mon minerals on Earth; it not only forms rocks like tion between the acidic functional groups of the limestone or marble but is also a main component of biomacromolecules and the mineral components. Ad- biominerals such as pearls, the nacre of seashells, and ditionally, it was reported that a macromolecular sea-urchin skeletons (1). Despite many years of re- hydrogel-like 3D network is formed before the miner- search, the polymorphism of CaCO3 is still far from alization of nacre (11), which may play a role in the being understood. CaCO3 has three anhydrous crys- crystallization process by confining the crystallization talline forms: calcite, aragonite, and vaterite, with a to defined small volumes. Nonetheless, confinement decreasing thermodynamic stability under aqueous has never been directly correlated with aragonite for- ambient conditions (calcite > aragonite > vaterite) mation in biominerals, although its capability of con- (2). While vaterite is rare in nature, calcite and arago- trolling crystal orientation and polymorphism has nite are both frequently found in rocks or biominerals been shown in many recent reports (12–15). (1). A well-known example is the aragonite structure of Now, Zeng et al. (5) explore for the first time the nacre (3), where the organization of the crystals leads impact of confinement on aragonite formation. By to extraordinary mechanical performance. However, precipitating CaCO3 within the cylindrical pores of in synthetic systems, crystallization experiments only track-etched membranes (Fig. -
Bacterially Mediated Mineralization of Vaterite
Geochimica et Cosmochimica Acta 71 (2007) 1197–1213 www.elsevier.com/locate/gca Bacterially mediated mineralization of vaterite Carlos Rodriguez-Navarro a,*, Concepcion Jimenez-Lopez b, Alejandro Rodriguez-Navarro a, Maria Teresa Gonzalez-Mun˜oz b, Manuel Rodriguez-Gallego a a Departamento de Mineralogı´a y Petrologı´a, Universidad de Granada, Fuentenueva s/n, 18002 Granada, Spain b Departamento de Microbiologı´a, Universidad de Granada, Fuentenueva s/n, 18002 Granada, Spain Received 4 May 2006; accepted in revised form 27 November 2006 Abstract Myxococcus xanthus, a common soil bacterium, plays an active role in the formation of spheroidal vaterite. Bacterial production of þ À CO2 and NH3 and the transformation of the NH3 to NH4 and OH , thus increasing solution pH and carbonate alkalinity, set the phys- icochemical conditions (high supersaturation) leading to vaterite precipitation in the microenvironment around cells, and directly onto the surface of bacterial cells. In the latter case, fossilization of bacteria occurs. Vaterite crystals formed by aggregation of oriented nano- crystals with c-axis normal to the bacterial cell-wall, or to the core of the spherulite when bacteria were not encapsulated. While preferred orientation of vaterite c-axis appears to be determined by electrostatic affinity (ionotropic effect) between vaterite crystal (0001) planes and the negatively charged functional groups of organic molecules on the bacterium cell-wall or on extracellular polymeric substances (EPS), analysis of the changes in the culture medium chemistry as well as high resolution transmission electron microscopy (HRTEM) observations point to polymorph selection by physicochemical (kinetic) factors (high supersaturation) and stabilization by organics, both connected with bacterial activity. -
What Can a Diffraction Pattern Tell You About Your Sample?
What can a diffraction pattern tell you about your sample? A diffraction pattern is like a ‘fingerprint’ and can be used to identify what crystals are present in your sample. Although calcite and vaterite both consist of calcium carbonate (they have the same chemical formula, CaCO3) the atoms are arranged differently in each structure – we call these polymorphs. 2- The crystal structures of calcite and vaterite are shown below. In the carbonate group (CO3 ) the oxygens are arranged in the 3 corners of a triangle, each bonded to the carbon in the centre. Both structures are made up of alternating layers of calcium and carbonate. Have a good look at the arrangements of the layers and see if you can describe the differences between the calcite and vaterite structures, before reading the summary in the table below! Don’t worry if you find the differences hard to see – it is very difficult to try and represent 3D crystal structures as 2D drawings! A view of the crystal structure of calcite A view of the crystal structure of vaterite Ca = green, C = black and O = red. Ca = green, C = black and O = red. Calcite Vaterite Orientation of Lie flat in the layer Stand perpendicular to the carbonate layers groups in the layers Calcium layer The Ca in a layer is offset from The Ca in a layer sits in the stacking those in the layers above and same position as those in the below. There is an ABCABC Ca layers above and below. layer stacking Carbonate layer Alternate carbonate layers have Alternate carbonate layers have stacking the carbonate triangle pointing -
A Passive Or Active Biogenic Origin of the Whitings Phenomenon by Synechococcus Bacillaris
0 A Passive or Active Biogenic Origin of the Whitings Phenomenon by Synechococcus bacillaris Lindsay Rollick A thesis submitted in partial fulfillment of the requirements for the degree of Bachelor of Science (Honours) Queen’s University Kingston, Ontario, Canada April 2, 2012 1 Abstract Whitings are a natural phenomenon of calcium carbonate (CaCO3) precipitation that occurs in both fresh and tropical marine waters. Previous studies have associated whitings with Synechococcus bacillaris and have suggested that these bacteria have an active role in whitings development including acting as nucleation sites and actively alkalinizing the surrounding microenvironment. CaCO3 minerals that have been influenced by bacteria in their formation have been found to have different crystal structures than 2- inorganically precipitated CaCO3. What is unknown is whether the carbonate (CO3 ) that is incorporated into the whitings comes from the external environment or is produced by the bacteria through photosynthesis. Oligotrophic S. bacillaris was grown in the laboratory in L1 medium. Microcosm experiments were conducted under closed conditions. pH in the experimental microcosms rose to 9.5 resulting in the precipitation of CaCO3, but then re-acidified as the bacteria entered death phase resulting in the precipitate re-dissolving. Uncontrolled temperature shocks caused decreased cell counts, clumping and acidification. Inorganic CaCO3, experimental precipitate, and pure cells were examined under scanning electron microscopy (SEM) and electron dispersive x-ray spectrometry (EDS). The inorganic CaCO3 had crystalline structures consistent with previous studies (mostly aragonite and amorphous calcium carbonate[ACC]). Extracellular polysaccharide (EPS) was observed in the experimental precipitate, but no CaCO3 precipitates were found, and no bacteria or CaCO3 could be observed in the pure cell sample. -
Crystal Growth Mechanism of Vaterite in the Systems Containing Charged Synthetic Poly(Amino Acids)
ORIGINAL SCIENTIFIC PAPER Croat. Chem. Acta 2017, 90(4), 689–698 Published online: 19 April 2018 DOI: 10.5562/cca3290 Crystal Growth Mechanism of Vaterite in the Systems Containing Charged Synthetic Poly(Amino Acids) Branka Njegić Džakula,1,* Giuseppe Falini,2 Damir Kralj1,# 1 Laboratory for Precipitation Processes, Division of Materials Chemistry, Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia 2 Dipartimento di Chimica "Giacomo Ciamician", Universitá di Bologna, Via Selmi 2, 40126 Bologna, Italy * Corresponding author’s e-mail address: [email protected] # Corresponding author’s e-mail address: [email protected] RECEIVED: January 18, 2018 REVISED: April 17, 2018 ACCEPTED: April 17, 2018 THIS PAPER IS DEDICATED TO PROF. MLADEN ON THE OCCASION OF HIS 70TH BIRTHDAY ŽINIĆ Abstract: Negatively ionisable poly-L-glutamic acid (pGlu) and poly-L-aspartic acid (pAsp), considered as analogues of the naturally occurring acidic macromolecules involved in biomineralization processes, were used as additives in the calcium carbonate precipitation systems in order to investigate their interactions with the vaterite crystallites. Poly-L-lysine (pLys), a positively ionisable poly(amino acid), was also used in order to elucidate the impact of the side chain charge. The growth kinetics of vaterite was found parabolic, indicating that the integration of growth units into the spiral step at the vaterite crystal surfaces is the rate-determining mechanism. The presence of small amounts of pGlu and pAsp inhibited the crystal growth. At the highest concentrations of both acidic macromolecules the exponential rate law was observed, which indicates the surface nucleation as the rate controlling mechanism. The addition of pLys in the range of applied concentrations did not significantly influence the crystal growth of the vaterite. -
Calcium Isotopes in Scleractinian Fossil Corals Since the Mesozoic: Implications for Vital Effects and Biomineralization Through Time ∗ Anne M
Earth and Planetary Science Letters 444 (2016) 205–214 Contents lists available at ScienceDirect Earth and Planetary Science Letters www.elsevier.com/locate/epsl Calcium isotopes in scleractinian fossil corals since the Mesozoic: Implications for vital effects and biomineralization through time ∗ Anne M. Gothmann a, , Michael L. Bender a, Clara L. Blättler a, Peter K. Swart b, Sharmila J. Giri b, Jess F. Adkins c, Jarosław Stolarski d, John A. Higgins a a Princeton University, Department of Geosciences, Princeton, NJ, USA b University of Miami, Department of Marine Geosciences, Miami, FL, USA c California Institute of Technology, Division of Geological and Planetary Sciences, Pasadena, CA, USA d Institute of Paleobiology, Polish Academy of Sciences, Warsaw, Poland a r t i c l e i n f o a b s t r a c t 44/40 Article history: We present a Cenozoic record of δ Ca from well preserved scleractinian fossil corals, as well as fossil 44/40 Received 24 September 2015 coral δ Ca data from two time periods during the Mesozoic (84 and 160 Ma). To complement the Received in revised form 27 February 2016 coral data, we also extend existing bulk pelagic carbonate records back to ∼80 Ma. The same fossil Accepted 6 March 2016 corals used for this study were previously shown to be excellently preserved, and to be faithful archives Available online 7 April 2016 44/40 of past seawater Mg/Ca and Sr/Ca since ∼200 Ma (Gothmann et al., 2015). We find that the δ Ca Editor: H. Stoll compositions of bulk pelagic carbonates from ODP Site 807 (Ontong Java Plateau) and DSDP Site 516 (Rio 44/40 Keywords: Grande Rise) have not varied by more than ∼±0.20h over the last ∼80 Myr. -
The Effect of Global Warming and Rising Atmospheric Coz According
Shoal Water Carbonate Geochemistry: The Effect Of Global Warming And RisingAtmospheric COz ANDREAs J. ANDERssoN+ AND FRED T. MACKENzIE Dept. of Oceanography,School of Oceanand Earth Scienceand Technology,Univ. of Hawaii Introduction Much attention has been paid in recent years to the behavior of organic carbon in the oceanas a potential sink for anthropogenicCOz. Much less attention has been given the oceanic carbonatecycle despitethe fact that the ultimate sink of anthropogenicCO, in the oceanwill be the dissolution of carbonates and hence increased alkalinity of ocean waters. Storage of carbon from the atinosphereper kilogram of seawateris about twice as much if continuousequilibrium with a metastable carbonate mineral is maintained, as when the reaction is simply hoinogenous solution of increased atmospheric COz, Model predictionssuggest that atmosphericCOz concentration by the end of the 21" century will be close to 700 ppmv comparedto 370 ppmv at present,assuming a "businessas usual" scenario.At this time, the global mean temperaturecould be 2-3'C warmer than present day. Increasedatmospheric COz will subsequentlyfacilitate increaseddissolved inorganic carbon in the mixed layer of the ocean,simply relatedto the increaseduptake of gaseousCOz in seawater accordingto COz+ H,O + CO> 2HCO>.Consequently COz' concentrationwill decrease, therebylowering the saturationstate of seawaterwith respectto carbonateminerals, The saturation stateis determinedby theproduct of theconcentrations of [Ca +] and[CO,'] dividedby the apparentsolubility