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Prokaryotic Diversity and Biogeochemical Characteristics of Benthic Microbial Ecosystems at La Brava, a Hypersaline Lake at Salar De Atacama, Chile
RESEARCH ARTICLE Prokaryotic diversity and biogeochemical characteristics of benthic microbial ecosystems at La Brava, a hypersaline lake at Salar de Atacama, Chile Maria Eugenia Farias1*, Maria Cecilia Rasuk1, Kimberley L. Gallagher4, Manuel Contreras2, Daniel Kurth1, Ana Beatriz Fernandez1, Daniel Poire 3, Fernando Novoa2, Pieter T. Visscher4,5 a1111111111 1 Laboratorio de Investigaciones MicrobioloÂgicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales MicrobioloÂgicos (PROIMI), CCT-TucumaÂn, CONICET, TucumaÂn, Argentina, 2 Centro de a1111111111 EcologõÂa Aplicada (CEA), NÄ uñoa, Santiago, Chile, 3 Centro de Investigaciones GeoloÂgicas, Universidad a1111111111 Nacional de La Plata-Conicet, La Plata, Argentina, 4 Department of Marine Sciences, University of a1111111111 Connecticut, Groton, Connecticut, United States of America, 5 Australian Centre for Astrobiology, University a1111111111 of New South Wales, Sydney, New South Wales, Australia * [email protected] OPEN ACCESS Abstract Citation: Farias ME, Rasuk MC, Gallagher KL, Contreras M, Kurth D, Fernandez AB, et al. (2017) Benthic microbial ecosystems of Laguna La Brava, Salar de Atacama, a high altitude hyper- Prokaryotic diversity and biogeochemical saline lake, were characterized in terms of bacterial and archaeal diversity, biogeochem- characteristics of benthic microbial ecosystems at istry, (including O2 and sulfide depth profiles and mineralogy), and physicochemical La Brava, a hypersaline lake at Salar de Atacama, characteristics. La Brava is one of several lakes in the Salar de Atacama where microbial Chile. PLoS ONE 12(11): e0186867. https://doi.org/ 10.1371/journal.pone.0186867 communities are growing in extreme conditions, including high salinity, high solar insolation, and high levels of metals such as lithium, arsenic, magnesium, and calcium. Evaporation Editor: Stefan J. -
Late Holocene Climate Variability in South- Central Chile: a Lacustrine Record of Southern Westerly Wind Dynamics
Late Holocene Climate Variability in South- Central Chile: a Lacustrine Record of Southern Westerly Wind Dynamics. Jonas Vandenberghe ACKNOWLEDGEMENTS First of all, I would like to thanks Prof. Dr. Marc De Batist for the support and supervision of my thesis and for providing this interesting subject as a master thesis project. He was always available for questions and added meaningful corrections and insights on more difficult topics. Special thanks goes to my advisor Willem Vandoorne for his endless support, corrections and answers to my questions in both the lab and during the writing of my thesis. Also I would like to thank other researchers at RCMG especially Maarten and Katrien for very useful explanations and discussions. I am very thankful for the help of all other personel who, directly or indirectly, contributed to this work. Prof. Dr. Eddy Keppens, Leen and Michael from the VUB for their efforts during the carbon and nitrogen isotopic analysis and Rieneke Gielens for her great help with the XRF core scanning at NIOZ. Finally I would like to thank my parents for their support and my girlfriend Celine for coping with me when I was under stress and for providing solutions to all kinds of problems. 1 SAMENVATTING In de laatste decennia was er een opmerkelijke stijging van onderzoek in klimaat reconstructies van de voorbije 1000 jaar. Deze reconstructies moeten een bijdrage leveren aan het begrijpen van de recente klimaatsveranderingen. Klimaatsreconstructies van het laatste millennium kunnen informatie geven over de significantie van deze stijgende trend, de oorzaak van de opwarming en de invloed ervan op andere omgeveingsmechanismes op Aarde. -
A Passive Or Active Biogenic Origin of the Whitings Phenomenon by Synechococcus Bacillaris
0 A Passive or Active Biogenic Origin of the Whitings Phenomenon by Synechococcus bacillaris Lindsay Rollick A thesis submitted in partial fulfillment of the requirements for the degree of Bachelor of Science (Honours) Queen’s University Kingston, Ontario, Canada April 2, 2012 1 Abstract Whitings are a natural phenomenon of calcium carbonate (CaCO3) precipitation that occurs in both fresh and tropical marine waters. Previous studies have associated whitings with Synechococcus bacillaris and have suggested that these bacteria have an active role in whitings development including acting as nucleation sites and actively alkalinizing the surrounding microenvironment. CaCO3 minerals that have been influenced by bacteria in their formation have been found to have different crystal structures than 2- inorganically precipitated CaCO3. What is unknown is whether the carbonate (CO3 ) that is incorporated into the whitings comes from the external environment or is produced by the bacteria through photosynthesis. Oligotrophic S. bacillaris was grown in the laboratory in L1 medium. Microcosm experiments were conducted under closed conditions. pH in the experimental microcosms rose to 9.5 resulting in the precipitation of CaCO3, but then re-acidified as the bacteria entered death phase resulting in the precipitate re-dissolving. Uncontrolled temperature shocks caused decreased cell counts, clumping and acidification. Inorganic CaCO3, experimental precipitate, and pure cells were examined under scanning electron microscopy (SEM) and electron dispersive x-ray spectrometry (EDS). The inorganic CaCO3 had crystalline structures consistent with previous studies (mostly aragonite and amorphous calcium carbonate[ACC]). Extracellular polysaccharide (EPS) was observed in the experimental precipitate, but no CaCO3 precipitates were found, and no bacteria or CaCO3 could be observed in the pure cell sample. -
The Effect of Global Warming and Rising Atmospheric Coz According
Shoal Water Carbonate Geochemistry: The Effect Of Global Warming And RisingAtmospheric COz ANDREAs J. ANDERssoN+ AND FRED T. MACKENzIE Dept. of Oceanography,School of Oceanand Earth Scienceand Technology,Univ. of Hawaii Introduction Much attention has been paid in recent years to the behavior of organic carbon in the oceanas a potential sink for anthropogenicCOz. Much less attention has been given the oceanic carbonatecycle despitethe fact that the ultimate sink of anthropogenicCO, in the oceanwill be the dissolution of carbonates and hence increased alkalinity of ocean waters. Storage of carbon from the atinosphereper kilogram of seawateris about twice as much if continuousequilibrium with a metastable carbonate mineral is maintained, as when the reaction is simply hoinogenous solution of increased atmospheric COz, Model predictionssuggest that atmosphericCOz concentration by the end of the 21" century will be close to 700 ppmv comparedto 370 ppmv at present,assuming a "businessas usual" scenario.At this time, the global mean temperaturecould be 2-3'C warmer than present day. Increasedatmospheric COz will subsequentlyfacilitate increaseddissolved inorganic carbon in the mixed layer of the ocean,simply relatedto the increaseduptake of gaseousCOz in seawater accordingto COz+ H,O + CO> 2HCO>.Consequently COz' concentrationwill decrease, therebylowering the saturationstate of seawaterwith respectto carbonateminerals, The saturation stateis determinedby theproduct of theconcentrations of [Ca +] and[CO,'] dividedby the apparentsolubility -
Conserved Bacterial Genomes from Two Geographically Isolated Peritidal Stromatolite Formations Shed Light on Potential Functional Guilds
Environmental Microbiology Reports (2021) 13(2), 126–137 doi:10.1111/1758-2229.12916 Brief Report Conserved bacterial genomes from two geographically isolated peritidal stromatolite formations shed light on potential functional guilds Samantha C. Waterworth,1 Eric W. Isemonger,2 oldest fossils of living organisms on Earth (Dupraz Evan R. Rees,1 Rosemary A. Dorrington2 and et al., 2009; Nutman et al., 2016, 2019). The study of Jason C. Kwan 1* extant stromatolite analogues may help to elucidate the 1Division of Pharmaceutical Sciences, University of biological mechanisms that led to the formation and evo- Wisconsin, Madison, WI, 53705. lution of their ancient ancestors. The biogenicity of stro- 2Department of Biochemistry and Microbiology, Rhodes matolites has been studied extensively in the hypersaline University, Grahamstown, South Africa. and marine formations of Shark Bay, Australia, and Exuma Cay, The Bahamas, respectively (Khodadad and Foster, 2012; Mobberley et al., 2015; Centeno Summary et al., 2016; Gleeson et al., 2016; Ruvindy et al., 2016; Stromatolites are complex microbial mats that form Warden et al., 2016; White et al., 2016; Babilonia lithified layers. Fossilized stromatolites are the oldest et al., 2018; Wong et al., 2018; Chen et al., 2020). The evidence of cellular life on Earth, dating back over presence of Archaea has been noted in several microbial 3.4 billion years. Modern stromatolites are relatively mats and stromatolite systems (Casaburi et al., 2016; rare but may provide clues about the function and Balci et al., 2018; Medina-Chávez et al., 2019; Chen evolution of their ancient counterparts. In this study, et al., 2020), particularly in the stromatolites of Shark we focus on peritidal stromatolites occurring at Cape Bay, where they are hypothesized to potentially fulfil the Recife and Schoenmakerskop on the southeastern role of nitrifiers and hydrogenotrophic methanogens South African coastline, the former being morpholog- (Wong et al., 2017). -
A Multidisciplinary Evaluation of Spatial Heterogeneity in the Puquios of the Salar De Llamara, Atacama Desert, Northern Chile
A Multidisciplinary Evaluation of Spatial Heterogeneity in the Puquios of the Salar de Llamara, Atacama Desert, Northern Chile R. Pamela Reid ( [email protected] ) University of Miami Amanda Oehlert University of Miami Erica Suosaari Smithsonian Institution Cecilia Demergasso Catholic University of the North Guillermo Chong Catholic University of the North Lorena Escudero Catholic University of the North Alan Piggot Bahamas Marine EcoCentre Ioan Lascu Smithsonian Institution Alvaro Palma FisioAqua Research Article Keywords: Atacama Desert, high UV radiation, wide temperature variation, salt ats (salars) Posted Date: February 1st, 2021 DOI: https://doi.org/10.21203/rs.3.rs-153999/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/27 Abstract The Atacama Desert, Central Andes of Northern Chile, is an extreme environment characterized by high UV radiation, wide temperature variation, minimum precipitation and is reputed as the driest desert in the world. Scarce lagoons associated with salt ats (salars) in this desert are the surface expression of shallow groundwater which serve as refugia for life, and often host microbial communities associated with evaporitic mineral deposition. Recent investigations of the Puquios of the Salar de Llamara in the Atacama Desert based on multidisciplinary eld studies provide unprecedented detail regarding the spatial heterogeneity of physical, chemical, and biological characteristics of such saline lake environments. Four main lagoons (‘Puquios’) and more than 400 smaller ponds, occur in an area less than 5 km2, are characterized by high variability in electrical conductivity, benthic and planktonic biota and microbiota, lagoon bottom type, and style of mineral deposition. -
Spatiotemporal Mapping and Monitoring of Whiting in the Semi
remote sensing Article Spatiotemporal Mapping and Monitoring of Whiting in the Semi-Enclosed Gulf Using Moderate Resolution Imaging Spectroradiometer (MODIS) Time Series Images and a Generic Ensemble Tree-Based Model Abdallah Shanableh 1,2, Rami Al-Ruzouq 1,2,* , Mohamed Barakat A. Gibril 2 , Cristina Flesia 3 and Saeed AL-Mansoori 4 1 Department of Civil and Environmental Engineering, University of Sharjah, Sharjah 27272, UAE; [email protected] 2 Research Institute of Sciences and Engineering, University of Sharjah, Sharjah 27272, UAE; [email protected] 3 Department of Earth and Environmental Sciences, University of Milano Bicocca, Piazza Della Scienza 4, 20126 Milano, Italy; cristina.fl[email protected] 4 Applications Development and Analysis Section (ADAS), Mohammed Bin Rashid Space Centre (MBRSC), Dubai 211833, UAE; [email protected] * Correspondence: [email protected]; Tel.: +971-6-505-0953 Received: 31 March 2019; Accepted: 13 May 2019; Published: 20 May 2019 Abstract: Whiting events in seas and lakes are a natural phenomenon caused by suspended calcium carbonate (CaCO3) particles. The Arabian Gulf, which is a semi-enclosed sea, is prone to extensive whiting that covers tens of thousands of square kilometres. Despite the extent and frequency of whiting events in the Gulf, studies documenting the whiting phenomenon are lacking. Therefore, the primary objective of this study was to detect, map and document the spatial and temporal distributions of whiting events in the Gulf using daily images acquired by the Moderate Resolution Imaging Spectroradiometer (MODIS) on NASA’s Terra and Aqua satellites from 2002 to 2018. A method integrating a geographic object-based image analysis, the correlation-based feature selection technique (CFS), the adaptive boosting decision tree (AdaBoost DT) and the rule-based classification were used in the study to detect, quantify and assess whiting events in the Gulf from the MODIS data. -
Organomineralization of Microbialites from Storr's Lake, San Salvador
Organomineralization of Microbialites from Storr’s Lake, San Salvador Island, Bahamas: Calcium Stable Isotope Analysis using TIMS and a 42Ca-43Ca double spike Thesis Presented in Partial Fulfillment of the Requirements for the Degree Master of Science in the Graduate School of The Ohio State University By Brittan Valhalla Wogsland, B.A. Graduate Program in Earth Sciences The Ohio State University 2020 Thesis Committee Elizabeth Griffith, Advisor Matthew Saltzman, Committee Member Thomas Darrah, Committee Member Copyrighted by Brittan Valhalla Wogsland 2020 2 Abstract The isotopic composition and mineralogy of modern microbialites provides us with tools useful for interpreting the formation processes and environments of ancient microbialites. Growing in the hypersaline and turbid Storr’s Lake on San Salvador Island in The Bahamas today are microbialites with low levels of photosynthesis and high levels of sulfate reduction-in contrast to many of their modern counterparts. Living planktonic, motile microorganisms and suspended algal and bacterial debris create the high turbidity of the shallow lake (<2 m) and rapidly attenuate sunlight in the water column. Within Storr’s Lake microbial metabolisms induce precipitation of carbonate within microenvironments of the microbial mats. Both high-Mg calcite (HMC) and aragonite are found within a majority of the microbialites measured leading to the hypothesis that the organomineralization process involves a step where HMC transforms to aragonite. Mineralogy and elemental analysis of a wide sampling of microbialites was undertaken to understand the extent of aragonite within Storr’s Lake microbialites. It was found that aragonite occurs at water depths greater than 40 cm within the lake and was present in all but one microbialite measured in this study. -
Las Quínoas Oncoids: a New Deposit of Microbialites in the Salar De Antofalla (Catamarca, Argentina)
Andean Geology 48 (2): 281-302. May, 2021 Andean Geology doi: 10.5027/andgeoV48n2-3292 www.andeangeology.cl Las Quínoas oncoids: a new deposit of microbialites in the Salar de Antofalla (Catamarca, Argentina) *Patricio Guillermo Villafañe1, 3, Agustina Inés Lencina1, 2, Mariana Soria1, Luis Alberto Saona1, Fernando Javier Gómez4, Guido Ezequiel Alonso5, María Eugenia Farías1 1 Laboratorio de Investigaciones Microbiológicas en Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI), CONICET, Av. Belgrano y Pasaje Caseros S/N, 4000 San Miguel de Tucumán, Tucumán, Argentina. [email protected]; [email protected]; [email protected]; [email protected]; [email protected] 2 Centro de Investigaciones y Transferencias Catamarca (CITCa), CONICET, Prado 366, 4700 San Fernando del Valle de Catamarca, Catamarca, Argentina. 3 Instituto Superior de Correlación Geológica (INSUGEO), CONICET-UNT, Av. Presidente Perón S/N, 4107 Yerba Buena, Tucumán, Argentina. 4 Centro de Investigaciones en Ciencias de la Tierra (CICTERRA), CONICET-UNC (Universidad Nacional de Córdoba), Vélez Sarsfield 1611, Piso 2, Of. 4, Ciudad Universitaria, Córdoba, Argentina. [email protected] 5 Cátedra de Química General, Facultad de Ciencias Naturales e IML, Universidad Nacional de Tucumán (UNT), Miguel Lillo 205, 4000 San Miguel de Tucumán, Tucumán, Argentina. [email protected] * Corresponding author: [email protected] ABSTRACT. The Salar de Antofalla (salt flat) is located in the Puna region of Catamarca, in northern Argentina. In this paper we report and provide the first descriptive data of Las Quínoas, a modern system of oncoids located in the western margin of the salt flat. Oncoids were studied by insitu logging, polished and thin sections analysis. -
Electrical Conductivity As a Driver of Biological and Geological Spatial Heterogeneity in the Puquios, Salar De Llamara, Atacama Desert, Chile R
www.nature.com/scientificreports OPEN Electrical conductivity as a driver of biological and geological spatial heterogeneity in the Puquios, Salar de Llamara, Atacama Desert, Chile R. P. Reid1,2*, A. M. Oehlert1,2, E. P. Suosaari1,2,3, C. Demergasso4, G. Chong5, L. V. Escudero4, A. M. Piggot2,6, I. Lascu3 & A. T. Palma7 Reputed to be the driest desert in the world, the Atacama Desert in the Central Andes of Northern Chile is an extreme environment with high UV radiation, wide temperature variation, and minimum precipitation. Scarce lagoons associated with salt fats (salars) in this desert are the surface expression of shallow groundwater; these ponds serve as refugia for life and often host microbial communities associated with evaporitic mineral deposition. Results based on multidisciplinary feld campaigns and associated laboratory examination of samples collected from the Puquios of the Salar de Llamara in the Atacama Desert during austral summer provide unprecedented detail regarding the spatial heterogeneity of physical, chemical, and biological characteristics of these salar environments. Four main lagoons (‘Puquios’) and more than 400 smaller ponds occur within an area less than 5 km2, and are characterized by high variability in electrical conductivity, benthic and planktonic biota, microbiota, lagoon bottom type, and style of mineral deposition. Results suggest that electrical conductivity is a driving force of system heterogeneity. Such spatial heterogeneity within the Puquios is likely to be expanded with temporal observations incorporating expected seasonal changes in electrical conductivity. The complexity of these Andean ecosystems may be key to their ability to persist in extreme environments at the edge of habitability. -
Diurnal Variation in Bacterioplankton Composition and DNA Damage in the Microbial Community from an Andean Oligotrophic Lake
Rev Argent Microbiol. 2014;46(4):358-362 REVISTA ARGENTINA DE MICROBIOLOGÍA www.elsevier.es/ram BRIEF REPORT Diurnal variation in bacterioplankton composition and DNA damage in the microbial community from an Andean oligotrophic lake María V. Fernández-Zenoffa,b,*, María C. Estéveza, María E. Faríasa a Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI), CCT, CONICET, Tucumán, Argentina b Instituto de Microbiología, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, Tucumán, Argentina Recibido el 6 de junio de 2014; aceptado el 2 de octubre de 2014 KEYWORDS Abstract CPD; Laguna Azul is an oligotrophic lake situated at 4,560 m above sea level and subject to a DGGE; high level of solar radiation. Bacterioplankton community composition (BCC) was analysed Andean lakes; by denaturing gradient gel electrophoresis and the impact of solar ultraviolet radiation Ultraviolet radiation was assessed by measuring cyclobutane pyrimidine dimers (CPD). Furthermore, pure cultures of Acinetobacter johnsonii A2 and Rhodococcus sp. A5 were exposed simulta- neously and CPD accumulation was studied. Gel analyses generated a total of 7 sequences belonging to Alpha-proteobacteria (1 band), Beta-proteobacteria (1 band), Bacteroidetes (2 bands), Actinobacteria (1 band), and Firmicutes (1 band). DGGE proÀ les showed minimal changes in BCC and no CPD was detected even though a high level of damage was found in biodosimeters. A. johnsonii A2 showed low level of DNA damage while Rhodococcus sp. A5 exhibited high resistance since no CPD were detected under natural UV-B exposure, suggesting that the bacterial community is well adapted to this highly solar irradiated environment. -
The Genomic Sequence of Exiguobacterium Chiriqhucha Str. N139 Reveals a Species That Thrives in Cold Waters and Extreme Environmental Conditions
The genomic sequence of Exiguobacterium chiriqhucha str. N139 reveals a species that thrives in cold waters and extreme environmental conditions Ana Gutiérrez-Preciado1,8,*, Carlos Vargas-Chávez1,*, Mariana Reyes-Prieto1, Omar F. Ordoñez2, Diego Santos-García1,9, Tania Rosas-Pérez1, Jorge Valdivia-Anistro3,4, Eria A. Rebollar5, Andrés Saralegui6, Andrés Moya1, Enrique Merino7, María Eugenia Farías2, Amparo Latorre1 and Valeria Souza4 1 Unidad de Genética Evolutiva, Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universidad de Valencia, Calle Catedrático José Beltrán Martínez, Paterna, Valencia, Spain 2 Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas, Planta Piloto de Procesos Industriales Microbiológicos (PROIMI), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Belgrano y Pasaje Caseros, San Miguel de Tucumán, Argentina 3 Carrera de Biología, Faculta de Estudios Superiores Zaragoza, UNAM, Mexico City, Mexico 4 Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México coyoacan, Mexico City, México 5 Department of Biology, James Madison University, Harrisonburg, VI, United States of America 6 Laboratorio Nacional de Microscopía Avanzada, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México 7 Departamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México 8 Current affiliation: Ecologie Systématique Evolution, CNRS, AgroParisTech,