Inherited Thrombocytopenias: History, Advances and Perspectives
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Human Periprostatic Adipose Tissue: Secretome from Patients With
CANCER GENOMICS & PROTEOMICS 16 : 29-58 (2019) doi:10.21873/cgp.20110 Human Periprostatic Adipose Tissue: Secretome from Patients With Prostate Cancer or Benign Prostate Hyperplasia PAULA ALEJANDRA SACCA 1, OSVALDO NÉSTOR MAZZA 2, CARLOS SCORTICATI 2, GONZALO VITAGLIANO 3, GABRIEL CASAS 4 and JUAN CARLOS CALVO 1,5 1Institute of Biology and Experimental Medicine (IBYME), CONICET, Buenos Aires, Argentina; 2Department of Urology, School of Medicine, University of Buenos Aires, Clínical Hospital “José de San Martín”, Buenos Aires, Argentina; 3Department of Urology, Deutsches Hospital, Buenos Aires, Argentina; 4Department of Pathology, Deutsches Hospital, Buenos Aires, Argentina; 5Department of Biological Chemistry, School of Exact and Natural Sciences, University of Buenos Aires, Buenos Aires, Argentina Abstract. Background/Aim: Periprostatic adipose tissue Prostate cancer (PCa) is the second most common cancer in (PPAT) directs tumour behaviour. Microenvironment secretome men worldwide. While most men have indolent disease, provides information related to its biology. This study was which can be treated properly, the problem consists in performed to identify secreted proteins by PPAT, from both reliably distinguishing between indolent and aggressive prostate cancer and benign prostate hyperplasia (BPH) disease. Evidence shows that the microenvironment affects patients. Patients and Methods: Liquid chromatography-mass tumour behavior. spectrometry-based proteomic analysis was performed in Adipose tissue microenvironment is now known to direct PPAT-conditioned media (CM) from patients with prostate tumour growth, invasion and metastases (1, 2). Adipose cancer (CMs-T) (stage T3: CM-T3, stage T2: CM-T2) or tissue is adjacent to the prostate gland and the site of benign disease (CM-BPH). Results: The highest number and invasion of PCa. -
Circular RNA Hsa Circ 0005114‑Mir‑142‑3P/Mir‑590‑5P‑ Adenomatous
ONCOLOGY LETTERS 21: 58, 2021 Circular RNA hsa_circ_0005114‑miR‑142‑3p/miR‑590‑5p‑ adenomatous polyposis coli protein axis as a potential target for treatment of glioma BO WEI1*, LE WANG2* and JINGWEI ZHAO1 1Department of Neurosurgery, China‑Japan Union Hospital of Jilin University, Changchun, Jilin 130033; 2Department of Ophthalmology, The First Hospital of Jilin University, Jilin University, Changchun, Jilin 130021, P.R. China Received September 12, 2019; Accepted October 22, 2020 DOI: 10.3892/ol.2020.12320 Abstract. Glioma is the most common type of brain tumor APC expression with a good overall survival rate. UALCAN and is associated with a high mortality rate. Despite recent analysis using TCGA data of glioblastoma multiforme and the advances in treatment options, the overall prognosis in patients GSE25632 and GSE103229 microarray datasets showed that with glioma remains poor. Studies have suggested that circular hsa‑miR‑142‑3p/hsa‑miR‑590‑5p was upregulated and APC (circ)RNAs serve important roles in the development and was downregulated. Thus, hsa‑miR‑142‑3p/hsa‑miR‑590‑5p‑ progression of glioma and may have potential as therapeutic APC‑related circ/ceRNA axes may be important in glioma, targets. However, the expression profiles of circRNAs and their and hsa_circ_0005114 interacted with both of these miRNAs. functions in glioma have rarely been studied. The present study Functional analysis showed that hsa_circ_0005114 was aimed to screen differentially expressed circRNAs (DECs) involved in insulin secretion, while APC was associated with between glioma and normal brain tissues using sequencing the Wnt signaling pathway. In conclusion, hsa_circ_0005114‑ data collected from the Gene Expression Omnibus database miR‑142‑3p/miR‑590‑5p‑APC ceRNA axes may be potential (GSE86202 and GSE92322 datasets) and explain their mecha‑ targets for the treatment of glioma. -
Myosin Motors: Novel Regulators and Therapeutic Targets in Colorectal Cancer
cancers Review Myosin Motors: Novel Regulators and Therapeutic Targets in Colorectal Cancer Nayden G. Naydenov 1, Susana Lechuga 1, Emina H. Huang 2 and Andrei I. Ivanov 1,* 1 Department of Inflammation and Immunity, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA; [email protected] (N.G.N.); [email protected] (S.L.) 2 Departments of Cancer Biology and Colorectal Surgery, Cleveland Clinic Foundation, Cleveland, OH 44195, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-216-445-5620 Simple Summary: Colorectal cancer (CRC) is a deadly disease that may go undiagnosed until it presents at an advanced metastatic stage for which few interventions are available. The develop- ment and metastatic spread of CRC is driven by remodeling of the actin cytoskeleton in cancer cells. Myosins represent a large family of actin motor proteins that play key roles in regulating actin cytoskeleton architecture and dynamics. Different myosins can move and cross-link actin filaments, attach them to the membrane organelles and translocate vesicles along the actin filaments. These diverse activities determine the key roles of myosins in regulating cell proliferation, differ- entiation and motility. Either mutations or the altered expression of different myosins have been well-documented in CRC; however, the roles of these actin motors in colon cancer development remain poorly understood. The present review aims at summarizing the evidence that implicate myosin motors in regulating CRC growth and metastasis and discusses the mechanisms underlying the oncogenic and tumor-suppressing activities of myosins. Abstract: Colorectal cancer (CRC) remains the third most common cause of cancer and the second most common cause of cancer deaths worldwide. -
Differential Gene Expression in Oligodendrocyte Progenitor Cells, Oligodendrocytes and Type II Astrocytes
Tohoku J. Exp. Med., 2011,Differential 223, 161-176 Gene Expression in OPCs, Oligodendrocytes and Type II Astrocytes 161 Differential Gene Expression in Oligodendrocyte Progenitor Cells, Oligodendrocytes and Type II Astrocytes Jian-Guo Hu,1,2,* Yan-Xia Wang,3,* Jian-Sheng Zhou,2 Chang-Jie Chen,4 Feng-Chao Wang,1 Xing-Wu Li1 and He-Zuo Lü1,2 1Department of Clinical Laboratory Science, The First Affiliated Hospital of Bengbu Medical College, Bengbu, P.R. China 2Anhui Key Laboratory of Tissue Transplantation, Bengbu Medical College, Bengbu, P.R. China 3Department of Neurobiology, Shanghai Jiaotong University School of Medicine, Shanghai, P.R. China 4Department of Laboratory Medicine, Bengbu Medical College, Bengbu, P.R. China Oligodendrocyte precursor cells (OPCs) are bipotential progenitor cells that can differentiate into myelin-forming oligodendrocytes or functionally undetermined type II astrocytes. Transplantation of OPCs is an attractive therapy for demyelinating diseases. However, due to their bipotential differentiation potential, the majority of OPCs differentiate into astrocytes at transplanted sites. It is therefore important to understand the molecular mechanisms that regulate the transition from OPCs to oligodendrocytes or astrocytes. In this study, we isolated OPCs from the spinal cords of rat embryos (16 days old) and induced them to differentiate into oligodendrocytes or type II astrocytes in the absence or presence of 10% fetal bovine serum, respectively. RNAs were extracted from each cell population and hybridized to GeneChip with 28,700 rat genes. Using the criterion of fold change > 4 in the expression level, we identified 83 genes that were up-regulated and 89 genes that were down-regulated in oligodendrocytes, and 92 genes that were up-regulated and 86 that were down-regulated in type II astrocytes compared with OPCs. -
Deconstructing Sarcomeric Structure–Function Relations in Titin-Bioid Knock-In Mice
ARTICLE https://doi.org/10.1038/s41467-020-16929-8 OPEN Deconstructing sarcomeric structure–function relations in titin-BioID knock-in mice Franziska Rudolph1, Claudia Fink1, Judith Hüttemeister1, Marieluise Kirchner2, Michael H. Radke 1,3, Jacobo Lopez Carballo1, Eva Wagner4,5,6, Tobias Kohl4,5,6, Stephan E. Lehnart 4,5,6, Philipp Mertins 2,7 & ✉ Michael Gotthardt 1,3,8 Proximity proteomics has greatly advanced the analysis of native protein complexes and 1234567890():,; subcellular structures in culture, but has not been amenable to study development and disease in vivo. Here, we have generated a knock-in mouse with the biotin ligase (BioID) inserted at titin’s Z-disc region to identify protein networks that connect the sarcomere to signal transduction and metabolism. Our census of the sarcomeric proteome from neonatal to adult heart and quadriceps reveals how perinatal signaling, protein homeostasis and the shift to adult energy metabolism shape the properties of striated muscle cells. Mapping biotinylation sites to sarcomere structures refines our understanding of myofilament dynamics and supports the hypothesis that myosin filaments penetrate Z-discs to dampen contraction. Extending this proof of concept study to BioID fusion proteins generated with Crispr/CAS9 in animal models recapitulating human pathology will facilitate the future analysis of molecular machines and signaling hubs in physiological, pharmacological, and disease context. 1 Neuromuscular and Cardiovascular Cell Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert Rössle Strasse, 1013125 Berlin, Germany. 2 Proteomics Platform, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert Rössle Strasse, 1013125 Berlin, Germany. 3 DZHK (German Center for Cardiovascular Research), Partner Site Berlin, Berlin, Germany. -
Targeting Mechanoresponsive Proteins in Pancreatic Cancer: 4-Hydroxyacetophenone Blocks Dissemination and Invasion by Activating MYH14 Authors
Author Manuscript Published OnlineFirst on July 29, 2019; DOI: 10.1158/0008-5472.CAN-18-3131 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Targeting mechanoresponsive proteins in pancreatic cancer: 4-hydroxyacetophenone blocks dissemination and invasion by activating MYH14 Authors: Alexandra Surcel1,*, Eric S. Schiffhauer1, Dustin G. Thomas1, Qingfeng Zhu2, Kathleen T. DiNapoli1,3, Maik Herbig4, Oliver Otto4,†, Hoku West-Foyle1, Angela Jacobi4, Martin Kräter4, Katarzyna Plak4, Jochen Guck4, Elizabeth M. Jaffee5, Pablo A. Iglesias1,3, Robert A. Anders2, Douglas N. Robinson1,6,7,* Affiliations: 1 Department of Cell Biology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA 2 Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA 3 Department of Electrical and Computer Engineering, Johns Hopkins University Whiting School of Engineering, Baltimore, MD 21218, USA 4 Biotechnology Center, Center for Molecular and Cellular Bioengineering, Technische Universität Dresden, 01307 Dresden, Germany 5 Department of Oncology, Sidney Kimmel Cancer Center at Johns Hopkins, The Skip Viragh Pancreatic Cancer Center, and the Bloomberg Kimmel Institute, Johns Hopkins University, Baltimore, MD 21205, USA 6 Department of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA 7 Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA † Current address: Centre for Innovation Competence, Humoral Immune Reactions in Cardiovascular Diseases Biomechanics, University of Greifswald, 17489 Greifswald, Germany Running title: Targeting mechanoresponsive MYH14 in pancreatic cancer *To whom correspondence should be addressed: Alexandra Surcel Department of Cell Biology 725 N. Wolfe St. Baltimore, MD 21205 [email protected] Douglas N. -
Biological Models of Colorectal Cancer Metastasis and Tumor Suppression
BIOLOGICAL MODELS OF COLORECTAL CANCER METASTASIS AND TUMOR SUPPRESSION PROVIDE MECHANISTIC INSIGHTS TO GUIDE PERSONALIZED CARE OF THE COLORECTAL CANCER PATIENT By Jesse Joshua Smith Dissertation Submitted to the Faculty of the Graduate School of Vanderbilt University In partial fulfillment of the requirements For the degree of DOCTOR OF PHILOSOPHY In Cell and Developmental Biology May, 2010 Nashville, Tennessee Approved: Professor R. Daniel Beauchamp Professor Robert J. Coffey Professor Mark deCaestecker Professor Ethan Lee Professor Steven K. Hanks Copyright 2010 by Jesse Joshua Smith All Rights Reserved To my grandparents, Gladys and A.L. Lyth and Juanda Ruth and J.E. Smith, fully supportive and never in doubt. To my amazing and enduring parents, Rebecca Lyth and Jesse E. Smith, Jr., always there for me. .my sure foundation. To Jeannine, Bill and Reagan for encouragement, patience, love, trust and a solid backing. To Granny George and Shawn for loving support and care. And To my beautiful wife, Kelly, My heart, soul and great love, Infinitely supportive, patient and graceful. ii ACKNOWLEDGEMENTS This work would not have been possible without the financial support of the Vanderbilt Medical Scientist Training Program through the Clinical and Translational Science Award (Clinical Investigator Track), the Society of University Surgeons-Ethicon Scholarship Fund and the Surgical Oncology T32 grant and the Vanderbilt Medical Center Section of Surgical Sciences and the Department of Surgical Oncology. I am especially indebted to Drs. R. Daniel Beauchamp, Chairman of the Section of Surgical Sciences, Dr. James R. Goldenring, Vice Chairman of Research of the Department of Surgery, Dr. Naji N. -
Genetic Cardiomyopathies: the Lesson Learned from Hipscs
Journal of Clinical Medicine Review Genetic Cardiomyopathies: The Lesson Learned from hiPSCs Ilaria My 1,2 and Elisa Di Pasquale 2,3,* 1 Department of Biomedical Sciences, Humanitas University, Pieve Emanuele, 20090 Milan, Italy; [email protected] 2 Humanitas Clinical and Research Center—IRCCS, Rozzano, 20089 Milan, Italy 3 Institute of Genetic and Biomedical Research (IRGB)—UOS of Milan, National Research Council (CNR), 20138 Milan, Italy * Correspondence: [email protected] Abstract: Genetic cardiomyopathies represent a wide spectrum of inherited diseases and constitute an important cause of morbidity and mortality among young people, which can manifest with heart failure, arrhythmias, and/or sudden cardiac death. Multiple underlying genetic variants and molecular pathways have been discovered in recent years; however, assessing the pathogenicity of new variants often needs in-depth characterization in order to ascertain a causal role in the disease. The application of human induced pluripotent stem cells has greatly helped to advance our knowledge in this field and enabled to obtain numerous in vitro patient-specific cellular models useful to study the underlying molecular mechanisms and test new therapeutic strategies. A milestone in the research of genetically determined heart disease was the introduction of genomic technologies that provided unparalleled opportunities to explore the genetic architecture of cardiomyopathies, thanks to the generation of isogenic pairs. The aim of this review is to provide an overview of the main research that helped elucidate the pathophysiology of the most common genetic cardiomyopathies: hypertrophic, dilated, arrhythmogenic, and left ventricular noncompaction cardiomyopathies. A special focus is provided on the application of gene-editing techniques in understanding key disease characteristics and on the therapeutic approaches that have been tested. -
Inhibition of the MID1 Protein Complex
Matthes et al. Cell Death Discovery (2018) 4:4 DOI 10.1038/s41420-017-0003-8 Cell Death Discovery ARTICLE Open Access Inhibition of the MID1 protein complex: a novel approach targeting APP protein synthesis Frank Matthes1,MoritzM.Hettich1, Judith Schilling1, Diana Flores-Dominguez1, Nelli Blank1, Thomas Wiglenda2, Alexander Buntru2,HannaWolf1, Stephanie Weber1,InaVorberg 1, Alina Dagane2, Gunnar Dittmar2,3,ErichWanker2, Dan Ehninger1 and Sybille Krauss1 Abstract Alzheimer’s disease (AD) is characterized by two neuropathological hallmarks: senile plaques, which are composed of amyloid-β (Aβ) peptides, and neurofibrillary tangles, which are composed of hyperphosphorylated tau protein. Aβ peptides are derived from sequential proteolytic cleavage of the amyloid precursor protein (APP). In this study, we identified a so far unknown mode of regulation of APP protein synthesis involving the MID1 protein complex: MID1 binds to and regulates the translation of APP mRNA. The underlying mode of action of MID1 involves the mTOR pathway. Thus, inhibition of the MID1 complex reduces the APP protein level in cultures of primary neurons. Based on this, we used one compound that we discovered previously to interfere with the MID1 complex, metformin, for in vivo experiments. Indeed, long-term treatment with metformin decreased APP protein expression levels and consequently Aβ in an AD mouse model. Importantly, we have initiated the metformin treatment late in life, at a time-point where mice were in an already progressed state of the disease, and could observe an improved behavioral phenotype. These 1234567890 1234567890 findings together with our previous observation, showing that inhibition of the MID1 complex by metformin also decreases tau phosphorylation, make the MID1 complex a particularly interesting drug target for treating AD. -
Identification of Novel Susceptibility Genes in Ozone-Induced Inflammation in Mice
Eur Respir J 2010; 36: 428–437 DOI: 10.1183/09031936.00145309 CopyrightßERS 2010 Identification of novel susceptibility genes in ozone-induced inflammation in mice A.K. Bauer*, E.L. Travis#, S.S. Malhotra#, E.A. Rondini*, C. Walker", H-Y. Cho", S. Trivedi", W. Gladwell", S. Reddy+ and S.R. Kleeberger" ABSTRACT: Ozone (O3) remains a prevalent air pollutant and public health concern. Inf2 is a AFFILIATIONS significant quantitative trait locus on murine chromosome 17 that contributes to susceptibility to *Dept of Pathobiology and Diagnostic Investigation, Michigan O3-induced infiltration of polymorphonuclear leukocytes (PMNs) into the lung, but the State University, East Lansing, MI, mechanisms of susceptibility remain unclear. The study objectives were to confirm and restrict #University of Texas MD Anderson Inf2, and to identify and test novel candidate susceptibility gene(s). Cancer Center, Houston, TX, " Congenic strains of mice that contained overlapping regions of Inf2 and their controls, and mice Laboratory of Respiratory Biology, NIEHS, Research Triangle Park, NC, deficient in either major histocompatibility complex (MHC) class II genes or the Tnf cluster, were and exposed to air or O3. Lung inflammation and gene expression were assessed. +Johns Hopkins University, Inf2 was restricted from 16.42 Mbp to 0.96 Mbp, and bioinformatic analysis identified MHC Baltimore, MD, USA. class II, the Tnf cluster and other genes in this region that contain potentially informative single CORRESPONDENCE nucleotide polymorphisms between the susceptible and resistant mice. Furthermore, O3-induced A.K. Bauer inflammation was significantly reduced in mice deficient in MHC class II genes or the Tnf cluster Dept of Pathobiology and Diagnostic genes, compared with wild-type controls. -
A Comprehensive Proteomics and Genomics Analysis Reveals Novel
Supplemental Material can be found at: http://www.mcponline.org/cgi/content/full/D600007-MCP200/ DC1 Dataset A Comprehensive Proteomics and Genomics Analysis Reveals Novel Transmembrane Proteins in Human Platelets and Mouse Megakaryocytes Including G6b-B, a Novel Immunoreceptor Tyrosine-based Inhibitory Motif Protein*□S Yotis A. Senis‡§, Michael G. Tomlinson‡¶, A´ ngel Garcíaʈ**, Stephanie Dumon‡, Victoria L. Heath‡, John Herbert‡, Stephen P. Cobbold‡‡, Jennifer C. Spalton‡, Sinem Ayman§§, Robin Antrobusʈ, Nicole Zitzmannʈ, Roy Bicknell‡, Jon Frampton‡, Downloaded from Kalwant S. Authi§§, Ashley Martin¶¶, Michael J. O. Wakelam¶¶, and Stephen P. Watson‡ʈʈ The platelet surface is poorly characterized due to the low tance of mutant mouse models in establishing protein abundance of many membrane proteins and the lack of function in platelets. This approach identified all of the www.mcponline.org specialist tools for their investigation. In this study we major classes of platelet transmembrane receptors, in- identified novel human platelet and mouse megakaryocyte cluding multitransmembrane proteins. Strikingly 17 of the membrane proteins using specialist proteomics and 25 most megakaryocyte-specific genes (relative to 30 genomics approaches. Three separate methods were used other serial analysis of gene expression libraries) were to enrich platelet surface proteins prior to identification by transmembrane proteins, illustrating the unique nature of liquid chromatography and tandem mass spectrometry: the megakaryocyte/platelet surface. The list of novel by Yotis Senis on April 2, 2007 lectin affinity chromatography, biotin/NeutrAvidin affinity plasma membrane proteins identified using proteomics chromatography, and free flow electrophoresis. Many includes the immunoglobulin superfamily member G6b, known, abundant platelet surface transmembrane pro- which undergoes extensive alternate splicing. -
Single-Cell Analyses Reveal Aberrant Pathways For
bioRxiv preprint doi: https://doi.org/10.1101/642819; this version posted May 20, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Single-cell analyses reveal aberrant pathways for megakaryocyte-biased hematopoiesis in myelofibrosis and identify mutant clone-specific targets Bethan Psaila1,2,3,4**, Guanlin Wang1,6*, Alba Rodriguez Meira1,2,3*, Elisabeth F. Heuston4, Rong Li1,2,3, Jennifer O’Sullivan1,2,3, NiKolaos Sousos1,2,3, Stacie Anderson5, Yotis Senis7, Olga K. Weinberg8, Monica L. Calicchio8, NIH Intramural Sequencing Center9, Deena IsKander10, Daniel RoYston11, Dragana MilojKovic10, Irene Roberts2,3,12, David M. Bodine4, Supat Thongjuea3,6**, Adam J. Mead1,2,3** 1 Haematopoietic Stem Cell Biology LaboratorY, Medical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM), University of Oxford, Oxford OX3 9DS, U.K. 2 MRC Molecular HaematologY Unit, WIMM, University of Oxford, Oxford, OX3 9DS, U.K. 3 NIHR Biomedical Research Centre, UniversitY of Oxford, Oxford, OX4 2PG, U.K. 4 Hematopoiesis Section, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892-4442, U.S.A. 5 NHGRI Flow CytometrY Core, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892-4442, U.S.A. 6 MRC WIMM Centre for Computational BiologY, MRC WIMM, UniversitY of Oxford, Oxford OX3 9DS, U.K. 7 Institute of Cardiovascular Sciences, College of Medical & Dental Sciences, UniversitY of Birmingham, Birmingham B15 2TT, U.K.