Proteoglycans Contribute to the Functional Integrity of the Glomerular
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Symptomatic and Asymptomatic Benign Prostatic Hyperplasia: Molecular Differentiation by Using Microarrays
Symptomatic and asymptomatic benign prostatic hyperplasia: Molecular differentiation by using microarrays Kulkarni Prakash*, Gregorio Pirozzi*, Michael Elashoff*, William Munger*, Iwao Waga†, Rajiv Dhir‡, Yoshiyuki Kakehi§, and Robert H. Getzenberg‡¶ *Gene Logic Inc., 708 Quince Orchard Road, Gaithersburg, MD 20878; ‡Departments of Urology, Pathology, and Pharmacology, and University of Pittsburgh Cancer Institute, University of Pittsburgh School of Medicine, 200 Lothrop Street, Pittsburgh, PA 15213; †Japan Tobacco Inc., Pharmaceutical Frontier Research Laboratories, 13-2, Fukura 1-chrome, Kanazawa-Ku, Yokahama, Kanagawa 236-0004, Japan; and §Department of Urology, Kagawa Medical University, Oaza Ikenobe, Miki-cho, Kida-gun, Kagawa 761-0793, Japan Communicated by Sherman M. Weissman, Yale University School of Medicine, New Haven, CT, April 1, 2002 (received for review December 5, 2001) Benign prostatic hyperplasia (BPH) is a disease of unknown etiology Table 1. Details of the samples used to compare gene that significantly affects the quality of life in aging men. Histologic expression analysis BPH may present itself either as symptomatic or asymptomatic in Sample group Age (yrs) No. of samples nature. To elucidate the molecular differences underlying BPH, gene expression profiles from the prostate transition zone tissue have been Normal (N) 13–50 10 analyzed by using microarrays. A set of 511 differentially expressed BPH without symptoms (O) 51–65 5 BPH with symptoms (S) 42–77 8 genes distinguished symptomatic and asymptomatic BPH. This ge- BPH with cancer (C) 60–70 8 netic signature separates BPH from normal tissue but does not seem to change with age. These data could provide novel approaches for alleviating symptoms and hyperplasia in BPH. -
Evaluation of Lumican Effects on Morphology of Invading Breast
Evaluation of lumican effects on morphology of invading breast cancer cells, expression of integrins and downstream signaling Konstantina Karamanou, Marco Franchi, Maurizio Onisto, Alberto Passi, Demitrios Vynios, Stéphane Brézillon To cite this version: Konstantina Karamanou, Marco Franchi, Maurizio Onisto, Alberto Passi, Demitrios Vynios, et al.. Evaluation of lumican effects on morphology of invading breast cancer cells, expression of integrins and downstream signaling. FEBS Journal, Wiley, 2020, 287, pp.4862 - 4880. 10.1111/febs.15289. hal-02986565 HAL Id: hal-02986565 https://hal.univ-reims.fr/hal-02986565 Submitted on 17 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Evaluation of lumican effects on morphology of invading breast cancer cells, expression of integrins and downstream signaling Konstantina Karamanou1,2,3 , Marco Franchi4 , Maurizio Onisto5 , Alberto Passi6 , Demitrios H. Vynios1 and Stephane Brezillon 2,3 1 Biochemistry, Biochemical Analysis & -
Multiple Antibodies Identify Glypican-1 Associated with Exosomes from Pancreatic
bioRxiv preprint doi: https://doi.org/10.1101/145706; this version posted July 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Multiple antibodies identify glypican-1 associated with exosomes from pancreatic cancer cells and serum from patients with pancreatic cancer Chengyan Dong1*, Li Huang1*, Sonia A. Melo2,3,4, Paul Kurywchak1, Qian Peng1, Christoph Kahlert5, Valerie LeBleu1# & Raghu Kalluri1# 1Department of Cancer Biology, Metastasis Research Center, University of Texas MD Anderson Cancer Center, Houston, TX 77005 2Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal (iI3S), 4200 Porto, Portugal; 3Institute of Pathology and Molecular Immunology of the University of Porto (IPATIMUP), 4200 Porto, Portugal; 4Medical School, Porto University (FMUP), 4200 Porto, Portugal 5 Department of Gastrointestinal, Thoracic and Vascular Surgery, Technische Universität Dresden, Germany * co-first authors # co-corresponding authors Exosomes are man-sized vesicles shed by all cells, including cancer cells. Exosomes can serve as novel liquid biopsies for diagnosis of cancer with potential prognostic value. The exact mechanism/s associated with sorting or enrichment of cellular components into exosomes are still largely unknown. We reported Glypican-1 (GPC1) on the surface of cancer exosomes and provided evidence for the enrichment of GPC1 in exosomes from patients with pancreatic cancer1. Several different laboratories have validated this novel conceptual advance and reproduced the original experiments using multiple antibodies from different sources. These include anti-GPC1 antibodies from ThermoFisher (PA5- 28055 and PA-5-24972)1,2, Sigma (SAB270028), Abnova (MAB8351, monoclonal antibodies clone E9E)3, EMD Millipore (MAB2600-monoclonal antibodies)4, SantaCruz5, and R&D Systems (BAF4519)2. -
Derived Cytotoxic T-Lymphocyte Epitope Peptide
INTERNATIONAL JOURNAL OF ONCOLOGY 42: 831-838, 2013 Identification of an H2-Kb or H2-Db restricted and glypican-3- derived cytotoxic T-lymphocyte epitope peptide TATSUAKI IWAMA1,2, KAZUTAKA HORIE1, TOSHIAKI YOSHIKAWA1, DAISUKE NOBUOKA1, MANAMI SHIMOMURA1, YU SAWADA1 and TETSUYA NAKATSURA1,2 1Division of Cancer Immunotherapy, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, Chiba 277-8577; 2Research Institute for Biomedical Sciences, Tokyo University of Science, Japan Received November 15, 2012; Accepted December 28, 2012 DOI: 10.3892/ijo.2013.1793 Abstract. Glypican-3 (GPC3) is overexpressed in human cholangiocarcinoma (ICC), with HCC as the most common. hepatocellular carcinoma (HCC) but not expressed in normal Regarding HCC therapy, hepatectomy, percutaneous local tissues except for placenta and fetal liver and therefore is an therapy and transcatheter arterial embolization (TAE) are ideal target for cancer immunotherapy. In this study, we common, but the recurrence rate with conventional therapies for identified an H2-Kb or H2-Db restricted and murine GPC3 advanced HCC patients is still high (2). Therefore, developing a (mGPC3)-derived cytotoxic T-lymphocyte (CTL) epitope novel curative therapy or an effective adjuvant therapy for HCC peptide in C57BL/6 (B6) mice, which can be used in the design is important. of preclinical studies of various therapies with GPC3-target Recently, immunotherapy, which consists of a peptide immunotherapy in vivo. First, 11 types of 9- to 10-mer peptides vaccine, protein vaccine, or DNA vaccine, has become a predicted to bind with H2-Kb or H2-Db were selected from the potentially promising option for HCC (3,4). -
Urinary Proteomics for the Early Diagnosis of Diabetic Nephropathy in Taiwanese Patients Authors
Urinary Proteomics for the Early Diagnosis of Diabetic Nephropathy in Taiwanese Patients Authors: Wen-Ling Liao1,2, Chiz-Tzung Chang3,4, Ching-Chu Chen5,6, Wen-Jane Lee7,8, Shih-Yi Lin3,4, Hsin-Yi Liao9, Chia-Ming Wu10, Ya-Wen Chang10, Chao-Jung Chen1,9,+,*, Fuu-Jen Tsai6,10,11,+,* 1 Graduate Institute of Integrated Medicine, China Medical University, Taichung, 404, Taiwan 2 Center for Personalized Medicine, China Medical University Hospital, Taichung, 404, Taiwan 3 Division of Nephrology and Kidney Institute, Department of Internal Medicine, China Medical University Hospital, Taichung, 404, Taiwan 4 Institute of Clinical Medical Science, China Medical University College of Medicine, Taichung, 404, Taiwan 5 Division of Endocrinology and Metabolism, Department of Medicine, China Medical University Hospital, Taichung, 404, Taiwan 6 School of Chinese Medicine, China Medical University, Taichung, 404, Taiwan 7 Department of Medical Research, Taichung Veterans General Hospital, Taichung, 404, Taiwan 8 Department of Social Work, Tunghai University, Taichung, 404, Taiwan 9 Proteomics Core Laboratory, Department of Medical Research, China Medical University Hospital, Taichung, 404, Taiwan 10 Human Genetic Center, Department of Medical Research, China Medical University Hospital, China Medical University, Taichung, 404, Taiwan 11 Department of Health and Nutrition Biotechnology, Asia University, Taichung, 404, Taiwan + Fuu-Jen Tsai and Chao-Jung Chen contributed equally to this work. Correspondence: Fuu-Jen Tsai, MD, PhD and Chao-Jung Chen, PhD FJ Tsai: Genetic Center, China Medical University Hospital, No.2 Yuh-Der Road, 404 Taichung, Taiwan; Telephone: 886-4-22062121 Ext. 2041; Fax: 886-4-22033295; E-mail: [email protected] CJ Chen: Graduate Institute of Integrated Medicine, China Medical University, No.91, Hsueh-Shih Road, 404, Taichung, Taiwan; Telephone: 886-4-22053366 Ext. -
Supplementary Material Contents
Supplementary Material Contents Immune modulating proteins identified from exosomal samples.....................................................................2 Figure S1: Overlap between exosomal and soluble proteomes.................................................................................... 4 Bacterial strains:..............................................................................................................................................4 Figure S2: Variability between subjects of effects of exosomes on BL21-lux growth.................................................... 5 Figure S3: Early effects of exosomes on growth of BL21 E. coli .................................................................................... 5 Figure S4: Exosomal Lysis............................................................................................................................................ 6 Figure S5: Effect of pH on exosomal action.................................................................................................................. 7 Figure S6: Effect of exosomes on growth of UPEC (pH = 6.5) suspended in exosome-depleted urine supernatant ....... 8 Effective exosomal concentration....................................................................................................................8 Figure S7: Sample constitution for luminometry experiments..................................................................................... 8 Figure S8: Determining effective concentration ......................................................................................................... -
A Krasg12d-Driven Genetic Mouse Model of Pancreatic Cancer Requires Glypican-1 for Efficient Proliferation and Angiogenesis
Oncogene (2012) 31, 2535–2544 & 2012 Macmillan Publishers Limited All rights reserved 0950-9232/12 www.nature.com/onc ORIGINAL ARTICLE A KrasG12D-driven genetic mouse model of pancreatic cancer requires glypican-1 for efficient proliferation and angiogenesis CA Whipple1,2, AL Young1,2 and M Korc1,2 1Departments of Medicine and Pharmacology and Toxicology, Dartmouth Medical School, Hanover, NH, USA and 2The Norris Cotton Cancer Center at Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA Pancreatic ductal adenocarcinomas (PDACs) exhibit Introduction multiple molecular alterations and overexpress heparin- binding growth factors (HBGFs) and glypican-1 (GPC1), Pancreatic ductal adenocarcinoma (PDAC) is a highly a heparan sulfate proteoglycan that promotes efficient metastatic malignancy that is the fourth leading cause signaling by HBGFs. It is not known, however, whether of cancer death in the United States, with an overall GPC1 has a role in genetic mouse models of PDAC. 5-year survival rate of o6% (Siegel et al., 2011). PDAC Therefore, we generated a GPC1 null mouse that exhibits a wide range of genetic and epigenetic altera- combines pancreas-specific Cre-mediated activation of tions including a high frequency (90–95%) of activating oncogenic Kras (KrasG12D) with deletion of a conditional Kras mutations, homozygous deletion (85%) and INK4A/Arf allele (Pdx1-Cre;LSL-KrasG12D;INK4A/ epigenetic silencing (15%) of the tumor suppressor Arflox/lox;GPC1À/À mice). By comparison with Pdx1- genes p16INK4A/p14ARF (INK4A), as well as an over- Cre;LSL-KrasG12D;INK4A/Arflox/lox mice that were wild abundance of heparin-binding growth factors (HBGFs) type for GPC1, the Pdx1-Cre;LSL-KrasG12D;INK4A/ (Korc, 2003; Schneider and Schmid, 2003). -
Stromal Protein-Mediated Immune Regulation in Digestive Cancers
cancers Review Stromal Protein-Mediated Immune Regulation in Digestive Cancers Pia Gamradt 1,* , Christelle De La Fouchardière 1,2 and Ana Hennino 1,3,* 1 Cancer Research Center of Lyon, UMR INSERM 1052, CNRS 5286, F-69373 Lyon, France; [email protected] 2 Department of Medical Oncology, Léon Bérard Center, F-69008 Lyon, France 3 Université Lyon 1, F-69100 Lyon, France * Correspondence: [email protected] (P.G.); [email protected] (A.H.) Simple Summary: Solid cancers are surrounded by a network of non-cancerous cells comprising different cell types, including fibroblasts, and acellular protein structures. This entire network is called the tumor microenvironment (TME) and it provides a physical barrier to the tumor shielding it from infiltrating immune cells, such as lymphocytes, or therapeutic agents. In addition, the TME has been shown to dampen efficient immune responses of infiltrated immune cells, which are key in eliminating cancer cells from the organism. In this review, we will discuss how TME proteins in particular are involved in this dampening effect, known as immunosuppression. We will focus on three different types of digestive cancers: pancreatic cancer, colorectal cancer, and gastric cancer. Moreover, we will discuss current therapeutic approaches using TME proteins as targets to reverse their immunosuppressive effects. Abstract: The stromal tumor microenvironment (TME) consists of immune cells, vascular and neural structures, cancer-associated fibroblasts (CAFs), as well as extracellular matrix (ECM), and favors immune escape mechanisms promoting the initiation and progression of digestive cancers. Numerous ECM proteins released by stromal and tumor cells are crucial in providing physical rigidity to the TME, though they are also key regulators of the immune response against cancer cells by interacting Citation: Gamradt, P.; De La directly with immune cells or engaging with immune regulatory molecules. -
Quantitative Proteomics Analysis by Isobaric Tags for Relative and Absolute Quantitation Identified Lumican As a Potential Marker for Acute Aortic Dissection
Hindawi Publishing Corporation Journal of Biomedicine and Biotechnology Volume 2011, Article ID 920763, 10 pages doi:10.1155/2011/920763 Research Article Quantitative Proteomics Analysis by Isobaric Tags for Relative and Absolute Quantitation Identified Lumican as a Potential Marker for Acute Aortic Dissection Guorong Gu,1 Weizhong Cheng, 1 Chenling Yao,1 Jun Yin,1 Chaoyang Tong,1 Andrew Rao,2 Lawrence Yen,2 Matthew Ku,2 and Jianyu Rao2 1 Zhongshan Hospital, Shanghai Medical College, Fudan University, Shanghai 200032, China 2 Department of Pathology and Laboratory Medicine, UCLA School of Medicine, Los Angeles, CA 90095, USA Correspondence should be addressed to Chenling Yao, [email protected] Received 6 September 2011; Revised 27 October 2011; Accepted 27 October 2011 Academic Editor: Saulius Butenas Copyright © 2011 Guorong Gu et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Acute aortic dissection (AAD) is a serious vascular disease. Currently the diagnosis relies on clinical and radiological means whereas serum biomarkers are lacking. The purpose of this study was to identify potential serum biomarkers for AAD using isobaric tags for relative and absolute quantitation (iTRAQ) approach. A total of 120 serum samples were collected from three groups: AAD patients (n = 60), patients with acute myocardial infarction (AMI, n = 30), and healthy volunteers (n = 30), whereas the first 10 samples from each group were used for iTRAQ analysis. Using iTRAQ approach, a total of 174 proteins were identified as significantly different between AAD patients and healthy subjects. -
Is Osteopontin a Friend Or Foe of Cell Apoptosis in Inflammatory
International Journal of Molecular Sciences Review Is Osteopontin a Friend or Foe of Cell Apoptosis in Inflammatory Gastrointestinal and Liver Diseases? Tomoya Iida ID , Kohei Wagatsuma, Daisuke Hirayama and Hiroshi Nakase * Department of Gastroenterology and Hepatology, Sapporo Medical University School of Medicine, Minami 1-jo Nishi 16-chome, Chuo-ku, Sapporo 060-8543, Japan; [email protected] (T.I.); [email protected] (K.W.); [email protected] (D.H.) * Correspondence: [email protected]; Tel.: +81-11-611-2111; Fax: +81-11-611-2282 Received: 22 November 2017; Accepted: 19 December 2017; Published: 21 December 2017 Abstract: Osteopontin (OPN) is involved in a variety of biological processes, including bone remodeling, innate immunity, acute and chronic inflammation, and cancer. The expression of OPN occurs in various tissues and cells, including intestinal epithelial cells and immune cells such as macrophages, dendritic cells, and T lymphocytes. OPN plays an important role in the efficient development of T helper 1 immune responses and cell survival by inhibiting apoptosis. The association of OPN with apoptosis has been investigated. In this review, we described the role of OPN in inflammatory gastrointestinal and liver diseases, focusing on the association of OPN with apoptosis. OPN changes its association with apoptosis depending on the type of disease and the phase of disease activity, acting as a promoter or a suppressor of inflammation and inflammatory carcinogenesis. It is essential that the roles of OPN in those diseases are elucidated, and treatments based on its mechanism are developed. Keywords: osteopontin; apoptosis; gastrointestinal; liver; inflammation; cacinogenesis 1. Introduction Cancer epidemiologists have described three carcinogenesis factors: daily diet, smoking, and inflammation [1]. -
Correlation of Glypican-1 Expression with TGF-ß, BMP, and Activin Receptors in Pancreatic Ductal Adenocarcinoma
1139-1148 3/10/06 15:55 Page 1139 INTERNATIONAL JOURNAL OF ONCOLOGY 29: 1139-1148, 2006 Correlation of glypican-1 expression with TGF-ß, BMP, and activin receptors in pancreatic ductal adenocarcinoma HANY KAYED1, JÖRG KLEEFF1, SHEREEN KELEG1, XIAOHUA JIANG1, ROLAND PENZEL2, THOMAS GIESE3, HANSWALTER ZENTGRAF4, MARKUS W. BÜCHLER1, MURRAY KORC5 and HELMUT FRIESS1 1Department of General Surgery, Institutes of 2Pathology and 3Immunology, University of Heidelberg; 4Department of Applied Tumor Virology, German Cancer Research Center, Heidelberg, Germany; 5Departments of Medicine, Pharmacology and Toxicology, Dartmouth Hitchcock Medical Center, Dartmouth Medical School, Lebanon, NH 03756, USA Received March 23, 2006; Accepted May 29, 2006 Abstract. Glypican1 (GPC1) is a cell surface heparan sulfate induction and Smad2 phosphorylation. In conclusion, enhanced proteoglycan that acts as a co-receptor for heparin-binding GPC1 expression correlates with BMP and activin receptors growth factors as well as for members of the TGF-ß family. in pancreatic cancer. GPC1 down-regulation suppresses GPC1 plays a role in pancreatic cancer by regulating growth pancreatic cancer cell growth and slightly modifies signaling factor responsiveness. In view of the importance of members of members of the TGF-ß family of growth factors. of the TGF-ß family in pancreatic cancer, in the present study, the role of GPC1 in TGF-ß, BMP and activin signaling was Introduction analyzed. Quantitative RT-PCR and immunohistochemistry were utilized to analyze GPC1 and TGF-ß, BMP and activin Glypican1 (GPC1) is a member of the family of heparan sulfate receptor expression levels. Panc-1 and T3M4 pancreatic cancer proteoglycans (HSPG), which are ubiquitous proteins that cells were transfected in a stable manner with a GPC1 antisense are attached to the extracytoplasmic surface of the cell expression construct. -
Papillomavirus Binding and Entry
PAPILLOMAVIRUS BINDING AND ENTRY The heparan sulfate receptor and inhibition by lactoferrin by Peter Drobni Department of Clinical Microbiology, Virology Umeå University, Sweden 2005 Front cover: Binding of papillomavirus to glycoseaminoglycans. Aquarelle by Mirva Drobni © 2005 Peter Drobni Printed in Sweden by Solfjädern Offset AB Umeå 2005 tom tom Till Elliot & Mirva TABLE OF CONTENTS 1. Abstract 9 2. List of papers 10 3. Abbreviations 11 4. Sammanfattning 12 5. Summary of papers 14 5.1 Paper I 14 5.2 Paper II 14 5.3 Paper III 15 5.4 Paper IV 15 6. Introduction 17 6.1 Human papillomavirus (HPV) 17 6.1.1 HPV History 17 6.1.2 Phylogeny 18 6.1.3 Genome organization 19 6.1.4 Structure 19 6.1.5 Life cycle 21 6.1.6 VLPs as research tools 22 6.1.7 Receptors for human papillomaviruses 23 6.1.8 Internalization 23 6.1.9 PV proteins 24 6.1.10 Disease 27 6.1.11 Therapy 29 6.1.12 Immune response 31 6.1.13 Vaccines 33 7 6.2 Glycosaminoglycans 35 6.2.1 General 35 6.2.2 As viral receptors 36 6.3 Lactoferrin 36 6.3.1 Structure 37 6.3.2 Antiviral mechanism 38 6.3.3 Lactoferricin 38 7. Aim of the thesis 39 8. Materials and methods 40 8.1 Cell lines 40 8.2 VLP production 40 8.3 CFDA-SE labeling 40 8.4 Binding assays 41 8.5 Internalization assays 41 9. Results and discussion 42 9.1 As a tool to study infection 42 9.2 CFDA-SE as an internalization assay 42 9.3 Heparan sulfate as an HPV receptor 43 9.4 Lactoferrin and lactoferricin as HPV inhibitors 44 9.5 Results from paper I 46 9.6 Results from paper II 46 9.7 Results from paper III 47 9.8 Results from paper IV 48 10.