ATP Synthase • Boyer’S Conformational Model • Racker’S Experiment • Jagendorf’S Experiment • Role of Uncouplers

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ATP Synthase • Boyer’S Conformational Model • Racker’S Experiment • Jagendorf’S Experiment • Role of Uncouplers ATP Synthesis Dr. Roshni Rajamohan Department of Botany Deshbandhu College Dr. Roshni Rajamohan ATP Synthesis • Mechanism of ATP Synthesis • Substrate level phosphorylation • Chemiosmotic mechanism (oxidative and photophosphorylation) • ATP Synthase • Boyer’s conformational model • Racker’s experiment • Jagendorf’s experiment • Role of uncouplers Dr. Roshni Rajamohan Mechanism of ATP Synthesis 1. Oxidative phosphorylation-It is the chemiosmotic synthesis of ATP associated with the transfer of electrons through the electron transport chain (from NADH / FADH 2 to O 2 by a series of electron carriers) and the accompanying consumption of oxygen. ATP is formed as a result of the transfer of electrons This process, which takes place in mitochondria, is the major source of ATP in aerobic organisms. 2. Photophosphorylation- The light-dependent chemiosmotic synthesis of ATPin the chloroplast in the presence of light. ATP is formed as a result of the transfer of electrons which takes place in chloroplast, is the major source of ATP in photosynthetic organisms 3. Substrate level phosphorylation-ATP synthesis by the transfer from a high-energy compound (phosphate group) ADP, without involvement of any electron transport is called substrate-level phosphorylation. Dr. Roshni Rajamohan Photophosphorylation Light-dependent ATPsynthesis- coupled reaction • This process was discovered by Daniel Arnon and co-workers in 1950s • Electron flow without accompanying phosphorylation is said to be uncoupled. • Photophosphorylation works via the chemiosmotic mechanism, first proposed in the 1960s by Peter Mitchell. • The total energy available for ATP synthesis, called the proton motive force (∆p), is the sum of a proton chemical potential and a transmembrane electric potential, ∆p = ∆E − 59(pΗi − pΗο) • A transmembrane pH difference of 1 pH unit is equivalent to a membrane potential of 59 mV. Dr. Roshni Rajamohan Substrate-level phosphorylation • ATP synthesis by the transfer from a high-energy compound (phosphate group) ADP, without involvement of any electron transport is called substrate-level phosphorylation. • In simple terms, it is the production of ATP by the transfer of a phosphoryl group from the substrate of a reaction to ADP. • Substrate-level phosphorylation differs from the other two ways of ATP synthesis i.e., oxidative-phosphorylation and photo- phosphorylation, in that the ATP synthesis is not coupled to any electron transport. • Oxidative-phosphorylation and photo-phosphorylation involves ATP synthesis coupled with electron transport. Dr. Roshni Rajamohan 2 Steps in Glycolysis where substrate level phosphorylation occurs Dr. Roshni Rajamohan • In the first reaction, energy is harvested in the form of ATP. The enzyme phosphoglycerate kinase catalyzes the transfer of the phosphoryl group of 1,3-bisphosphoglycerate to ADP. This is the first substrate-level phosphorylation of glycolysis, and it produces ATP and 3-phosphoglycerate. It is a coupled reaction in which the high energy bond is hydrolyzed and the energy released is used to drive the synthesis of ATP. • The final substrate-level phosphorylation in the pathway is catalyzed by pyruvate kinase where Phosphoenolpyruvate is coverted to Pyruvate. Phosphoenolpyruvate serves as a donor of the phosphoryl group that is transferred to ADP to produce ATP. This is another coupled reaction in which hydrolysis of the phosphoester bond in phosphoenolpyruvate provides energy for the formation of the phospho-anhydride bond of ATP. Dr. Roshni Rajamohan ATP synthase • The ATP is synthesized by a large (400 kDa) enzyme complex known by several names: ATP synthase, ATP ase (afterthe reverse reaction of ATP hydrolysis), and CFo–C1 (Boyer,1997). • This enzyme consists of two parts: a hydrophobic membrane-bound portion called CFo and a portion that sticks out into the stroma called CF1. • CF1 is the portion of the complex that synthesizes ATP. CF1 is made up of several peptides, including three copies of each of the αand βpeptides arranged alternately much like the sections of an orange. Whereas the catalytic sites are located largely on the βpolypeptide, many of the other peptides are thought to have primarily regulatory functions. • CFo appears to form a channel across the membrane through which protons can pass. • The molecular structure of the mitochondrial ATP synthase has been determined by X-ray crystallography (Stock et al. 1999). Although there are significant differences between the chloroplast and mitochondrial enzymes, they have the same overall architecture and probably nearly identical catalytic sites. In fact, there are remarkable similarities in the way electron flow is coupled to proton translocation in chloroplasts, mitochondria, and purple bacteria . • Another remarkable aspect of the mechanism of the ATP synthase is that the internal stalk and probably much of the CFo portion of the enzyme rotate during catalysis (Yasuda et al. 2001). The enzyme is actually a tiny molecular motor.Dr. Roshni Rajamohan Structure of ATP synthase Dr. Roshni Rajamohan ATP synthase- A tiny molecular motor ATPase or CFo–CF1 • CF1 is the portion of the complex that synthesizes ATP. • CFo appears to form a channel across the membrane through which protons can pass. • It is a large multi-subunit complex, CF1, attached on the stromal side of the membrane to an integral membrane portion, known as CFo. • CF1 consists of five different polypeptides, with a stoichiometry of α3, β3, γ, δ, ε. Cfo contains probably four different polypeptides, with a stoichiometry of a, b, b′, c12. Dr. Roshni Rajamohan • Model of the FoF1-ATPase, showing the attachment of the catalytic complex to the membrane via the β subunit and the δ subunit. • When the reaction runs in reverse (ATP synthesis), protons diffuse through the Fo complex down their electrochemical gradient. The movement of protons through the channel drives the rotation of the entire Fo complex within the membrane. • The γ subunit, which is attached to the Fo complex, then turns within the catalytic complex, causing the conformational changes that are required for ATP synthesis. • It is assumed that the catalytic complex itself does not rotate, but is anchored to the membrane. The δ subunit is located on the outside of the β subunit and serves as the site of attachment of the β subunit, which anchors the catalytic complex to the membrane and prevents it from spinning. • In mechanical terms, the F1 complex and its membrane anchor act as a stationary housing, or “stator,” while γ subunit (and possibly the Fo complex) serves as the “rotor.” (From Junge et al. 1997.) Dr. Roshni Rajamohan Uncouplers / Protonophores • Uncouplers are amphiphilic compounds(which are soluble both in water and lipids). They are agents with conjugated double bonds which allow them to diffuse across the membrane in both the protonated form and the unprotonated form, and thus dissipate the electrochemical proton gradient. • Uncouplers which transfer protons across the membrane are known as protonophores. • They disrupts phosphorylation by dissociating the reactions of ATP synthesis from the electron transport chain. They directly bypasses the ATP synthase by allowing passive proton influx, without affecting electron flow, but ATP synthesis does not occur. • The result is that the cell or mitochondrion expends energy to generate a proton motive force, but the proton motive force is dissipated before the ATP synthase can recapture this energy and use it to make ATP. • Uncouplers increases the proton permeability of the inner mitochondrial membrane and dissipates the proton gradient. Uncouplers are capable of transporting protons through mitochondrial and chloroplast membranes. • Both mammalian and plant mitochondria contain uncoupling protein (UCP). This protein facilitates the movement of protons across the inner membrane and therefore partially uncouples electron transport and decreases the ATP yield of respiration. Electron flow without accompanying phosphorylation is said to be uncoupled. • Uncoupling proteins (UCPs) occur in the inner mitochondrial membrane and dissipate the proton gradient across this membrane that is normally usedDr. Roshnifor ATP Rajamohan synthesis. Role of uncoupling agents • Addition of uncouplers results in continuation of electron transport and proton pumping, without generation of any proton gradient. ATP synthesis does not occur without affecting uptake of oxygen. In the absence of proton gradient, however, protons are transported in reverse direction through ATP synthase at the expense of ATP. Protonated DNP (a weak acid) diffuses from high proton concentration side of the membrane to low proton concentration side where it gets dissociated to generate protons resulting in dissipation of proton gradient. Membrane is permeable to both protonated and anionic forms of these. • E.g. FCCP (trifluoromethoxy carbonyl cyanide phenylhydrazone), a very efficient mitochondrial uncoupler. Other exampes of uncouplers- Carbonyl cyanide phenylhydrazone (CCP) 2,4-dinitrophenol (DNP), Carbonyl cyanide m-chlorophenyl hydrazine (CCCP) Dr. Roshni Rajamohan The mechanism of action of uncouplers (A) The protonation / deprotonation of FCCP which is a weak acid. (B) In the presence of an electrochemical proton gradient across the membrane, FCCP will become protonated and thus pick up a proton on the positive side of the membrane, move across the membrane in the neutral form, and lose the proton on the negative side. This is driven by the electrochemical proton gradient. In the negative
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