Gene Drives: Pursuing Opportunities, Minimizing Risk Core Team
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Human Chromosome‐Specific Aneuploidy Is Influenced by DNA
Article Human chromosome-specific aneuploidy is influenced by DNA-dependent centromeric features Marie Dumont1,†, Riccardo Gamba1,†, Pierre Gestraud1,2,3, Sjoerd Klaasen4, Joseph T Worrall5, Sippe G De Vries6, Vincent Boudreau7, Catalina Salinas-Luypaert1, Paul S Maddox7, Susanne MA Lens6, Geert JPL Kops4 , Sarah E McClelland5, Karen H Miga8 & Daniele Fachinetti1,* Abstract Introduction Intrinsic genomic features of individual chromosomes can contri- Defects during cell division can lead to loss or gain of chromosomes bute to chromosome-specific aneuploidy. Centromeres are key in the daughter cells, a phenomenon called aneuploidy. This alters elements for the maintenance of chromosome segregation fidelity gene copy number and cell homeostasis, leading to genomic instabil- via a specialized chromatin marked by CENP-A wrapped by repeti- ity and pathological conditions including genetic diseases and various tive DNA. These long stretches of repetitive DNA vary in length types of cancers (Gordon et al, 2012; Santaguida & Amon, 2015). among human chromosomes. Using CENP-A genetic inactivation in While it is known that selection is a key process in maintaining aneu- human cells, we directly interrogate if differences in the centro- ploidy in cancer, a preceding mis-segregation event is required. It was mere length reflect the heterogeneity of centromeric DNA-depen- shown that chromosome-specific aneuploidy occurs under conditions dent features and whether this, in turn, affects the genesis of that compromise genome stability, such as treatments with micro- chromosome-specific aneuploidy. Using three distinct approaches, tubule poisons (Caria et al, 1996; Worrall et al, 2018), heterochro- we show that mis-segregation rates vary among different chromo- matin hypomethylation (Fauth & Scherthan, 1998), or following somes under conditions that compromise centromere function. -
The Diversity of Plant Sex Chromosomes Highlighted Through Advances in Genome Sequencing
G C A T T A C G G C A T genes Review The Diversity of Plant Sex Chromosomes Highlighted through Advances in Genome Sequencing Sarah Carey 1,2 , Qingyi Yu 3,* and Alex Harkess 1,2,* 1 Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL 36849, USA; [email protected] 2 HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA 3 Texas A&M AgriLife Research, Texas A&M University System, Dallas, TX 75252, USA * Correspondence: [email protected] (Q.Y.); [email protected] (A.H.) Abstract: For centuries, scientists have been intrigued by the origin of dioecy in plants, characterizing sex-specific development, uncovering cytological differences between the sexes, and developing theoretical models. Through the invention and continued improvements in genomic technologies, we have truly begun to unlock the genetic basis of dioecy in many species. Here we broadly review the advances in research on dioecy and sex chromosomes. We start by first discussing the early works that built the foundation for current studies and the advances in genome sequencing that have facilitated more-recent findings. We next discuss the analyses of sex chromosomes and sex-determination genes uncovered by genome sequencing. We synthesize these results to find some patterns are emerging, such as the role of duplications, the involvement of hormones in sex-determination, and support for the two-locus model for the origin of dioecy. Though across systems, there are also many novel insights into how sex chromosomes evolve, including different sex-determining genes and routes to suppressed recombination. We propose the future of research in plant sex chromosomes should involve interdisciplinary approaches, combining cutting-edge technologies with the classics Citation: Carey, S.; Yu, Q.; to unravel the patterns that can be found across the hundreds of independent origins. -
Cytogenetics of Fraxinus Mandshurica and F. Quadrangulata: Ploidy Determination and Rdna Analysis
Tree Genetics & Genomes (2020) 16:26 https://doi.org/10.1007/s11295-020-1418-6 ORIGINAL ARTICLE Cytogenetics of Fraxinus mandshurica and F. quadrangulata: ploidy determination and rDNA analysis Nurul Islam-Faridi1,2 & Mary E. Mason3 & Jennifer L. Koch4 & C. Dana Nelson5,6 Received: 22 July 2019 /Revised: 1 January 2020 /Accepted: 16 January 2020 # The Author(s) 2020 Abstract Ashes (Fraxinus spp.) are important hardwood tree species in rural, suburban, and urban forests of the eastern USA. Unfortunately, emerald ash borer (EAB, Agrilus planipennis) an invasive insect pest that was accidentally imported from Asia in the late 1980s–early 1990s is destroying them at an alarming rate. All North American ashes are highly susceptible to EAB, although blue ash (F. quadrangulata) may have some inherent attributes that provide it some protection. In contrast Manchurian ash (F. mandshurica) is relatively resistant to EAB having coevolved with the insect pest in its native range in Asia. Given its level of resistance, Manchurian ash has been considered for use in interspecies breeding programs designed to transfer resistance to susceptible North American ash species. One prerequisite for successful interspecies breeding is consistency in chromosome ploidy level and number between the candidate species. In the current study, we cytologically determined that both Manchurian ash and blue ash are diploids (2n) and have the same number of chromosomes (2n =2x = 46). We also characterized these species’ ribosomal gene families (45S and 5S rDNA) using fluorescence in situ hybridization (FISH). Both Manchurian and blue ash showed two 45S rDNA and one 5S rDNA sites, but blue ash appears to have an additional site of 45S rDNA. -
Generating High Variability of B Chromosomes in Eyprepocnemis Plorans (Grasshopper)
Heredity 71 (1993) 352—362 Received 5 January 1993 Genetical Society of Great Britain Generating high variability of B chromosomes in Eyprepocnemis plorans (grasshopper) M. D. LOPEZ-LEON, J. CABRERO, M. C. PARDO, E. VISERAS, J. P. M. CAMACHO* & J. L. SANTOSI Departamento de Genética, Facu/tad de Ciencias, Un/versidad de Granada, E- 18071 Granada, Spa/n and tDepartamento de Genét/ca, Facultad de B/o/ogIa, Un/vers/dad Comp/utense de Madrid, E-28040 Madrid, Spa/n Twenty-eightprogeny analyses (PAs) performed on specimens of E. plorans collected from four natural Iberian populations have been informative about the transmission of rare B chromosome types or the de novo origin of some of them. At least ii rare B-types have been found in addition to the predominant ones: B1 in Daimuz, B2 in Jete and Salobreña, and B5 in Fuengirola. The presence in two controlled crosses of one embryo carrying a B-type which was absent in the parents suggests that these B variants (B20 and B )haveoriginated de novo. Eleven other PAs suggest that new B derivatives are recurrently arising in these populations. The most frequent B chromosome mutation was centromere misdivision that originated four different B-types (B2m1,B110,B210 and Bmjnj). Other rearrangements were pericentric inversions (B211, B212 and B213), inverse tandem fusion (B211), centric fusion (B11) and deletions (B2d1andB2d2).Thefour B derivatives produced by centromeric misdivision are significantly eliminated during sexual transmission, most probably owing to deficiencies in the control of chromosome movement by their hemicentromeres. Those derived from translocations showed Mendelian transmission but deletion B variants showed a tendency to elimination. -
Gene Drives for Malaria Control and Elimination in Africa
GENE DRIVES FOR MALARIA CONTROL AND ELIMINATION IN AFRICA HIGH LEVEL APET REPORT • GENE DRIVES FOR MALARIA CONTROL AND ELIMINATION IN AFRICA About the AU and NEPAD The African Union (AU) The African Union (AU) is a continental union consisting of all 55 countries on the African continent. It was established on 26 May 2001 in Addis Ababa, Ethiopia, and launched on 9 July 2002 in South Africa, with the aim of replacing the Organisation of African Unity (OAU). The most important decisions of the AU are made by the Assembly of the African Union, a semi-annual meeting of the heads of state and government of its member states. The AU’s secretariat, the African Union Commission, is based in Addis Ababa. The AU was established following the 9th September 1999 Sirte Declaration of the Heads of State and Governments of the Organisation of the African Unity (OAU). The AU is based on a common vision of a united and strong Africa and on the need to build a partnership between governments and all segments of civil society, in particular, women, the youth and the private sector, in order to strengthen solidarity and cohesion amongst the peoples of Africa. As a continental organization, it focuses on the promotion of peace, security and stability. The development work of the AU is guided by the AU Agenda 2063, which is a 50-year plan to harness Africa’s comparative advantage to deliver on the vision of “The Africa We Want”. The New Partnership for Africa’s Development (NEPAD) Created by the African Union, the New Partnership for Africa’s Development (NEPAD) is a strategic framework for Pan-African socio- economic development. -
Continuous Variation in Y-Chromosome Structure of Rumex Acetosa
Heredity 57 (1986) 247-254 The Genetical Society of Great Britain Received 16 December 1985 Continuous variation in Y-chromosome structure of Rumex acetosa A. S. Wilby and School of Biological Sciences, J. S. Parker Queen Mary College, Mile End Road, London El 4NS. The dioecious angiosperm Rumex acetosa has an XXIXY1Y2sex-chromosomesystem. Each V-chromosome is heterochromatic except for a minute terminal euchromatic pairing segment. The Vs are constant in size but have a variable centromere position. The centromeres can be located anywhere within the central 40 per cent of the chromosome but are excluded from the two distal 30 per cent regions. In a sample of 270 males from 18 different populations 68 distinct variants have been identified on the basis of V-morphology. All populations are highly polymorphic with a minimum of four variants in a sample of ten males. The origin and significance of this massive variability is considered in this paper. Increased mutation rate of the Ys may be implicated in maintenance of this variation. I NTRO DUCTI ON these "inert" Ys has been described (Vana, 1972) variation in their structure has been overlooked. Sex-determinationin animals is usually genic and Extensive heterochroinatic content is a charac- frequently associated with visibly-differentiated teristic of many Y- and W-chromosomes. Indeed, sex-chromosomes. Sex expression in plants, some have argued that the process of hetero- however, is usually more plastic, and is subject to chromatinisation itself was implicated in the initial environmental influences such as temperature and phase of sex-chromosome differentiation (Jones, photoperiod (Heslop-Harrison, 1957). -
The Longest Telomeres: a General Signature of Adult Stem Cell Compartments
Downloaded from genesdev.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press The longest telomeres: a general signature of adult stem cell compartments Ignacio Flores,1 Andres Canela,1 Elsa Vera,1 Agueda Tejera,1 George Cotsarelis,2 and María A. Blasco1,3 1Telomeres and Telomerase Group, Molecular Oncology Program, Spanish National Cancer Centre (CNIO), Madrid E-28029, Spain; 2University of Pennsylvania School of Medicine, M8 Stellar-Chance Laboratories, Philadelphia, Pennsylvania 19104, USA Identification of adult stem cells and their location (niches) is of great relevance for regenerative medicine. However, stem cell niches are still poorly defined in most adult tissues. Here, we show that the longest telomeres are a general feature of adult stem cell compartments. Using confocal telomere quantitative fluorescence in situ hybridization (telomapping), we find gradients of telomere length within tissues, with the longest telomeres mapping to the known stem cell compartments. In mouse hair follicles, we show that cells with the longest telomeres map to the known stem cell compartments, colocalize with stem cell markers, and behave as stem cells upon treatment with mitogenic stimuli. Using K15-EGFP reporter mice, which mark hair follicle stem cells, we show that GFP-positive cells have the longest telomeres. The stem cell compartments in small intestine, testis, cornea, and brain of the mouse are also enriched in cells with the longest telomeres. This constitutes the description of a novel general property of adult stem cell compartments. Finally, we make the novel finding that telomeres shorten with age in different mouse stem cell compartments, which parallels a decline in stem cell functionality, suggesting that telomere loss may contribute to stem cell dysfunction with age. -
What Is Gene Drive?
The Science: What is gene drive? What is gene drive? Gene drive is a genetic phenomenon that occurs in nature and causes a selected trait to spread rapidly through a species via sexual reproduction over several generations. Gene drive works by increasing the likelihood that a modified gene will be inherited by its offspring. Normally, genes have a 50/50 chance of being inherited, but gene drive How is Target Malaria using systems could increase that chance to upwards gene drive technology? of 99 percent. This means that over the course of several generations, a selected trait could become We aim to tackle malaria at the source. Target increasingly common within a specific species. Malaria is using gene drive approaches to insert a modification in malaria mosquitoes that would Researchers have been studying how to harness affect the mosquito’s ability to reproduce. By gene drives to solve some of society’s most reducing the population of malaria mosquitoes, intractable problems for a long time. Public health we aim to reduce the transmission of the disease. and ecosystem conservation are two of the main areas where research has focused, although other Worldwide there are more than 3,500 species of uses are also possible. mosquito, with 837 of them in Africa. Of these, a single cluster of three very closely related What are gene drive applications species are responsible for most of the malaria transmission – Anopheles gambiae, Anopheles in public health? coluzzii and Anopheles arabiensis. In public health, several proposals have been The project is investigating the use of genes that made which would use gene drive to limit the produce enzymes (called nucleases) that cut spread of diseases, particularly those spread specific sequences of DNA. -
Arabidopsis MZT1 Homologs GIP1 and GIP2 Are Essential for Centromere Architecture
Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture Morgane Batzenschlagera, Inna Lermontovab, Veit Schubertb, Jörg Fuchsb, Alexandre Berra, Maria A. Koinic, Guy Houlnéa, Etienne Herzoga, Twan Ruttenb, Abdelmalek Aliouaa, Paul Franszc, Anne-Catherine Schmita, and Marie-Edith Chaboutéa,1 aInstitut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, 67000 Strasbourg, France; bLeibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Stadt Seeland, Germany; and cSwammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH, Amsterdam, The Netherlands Edited by James A. Birchler, University of Missouri, Columbia, MO, and approved May 12, 2015 (received for review April 2, 2015) Centromeres play a pivotal role in maintaining genome integrity Previously, we characterized the γ-tubulin complex protein 3- by facilitating the recruitment of kinetochore and sister-chromatid interacting proteins (GIPs), GIP1 and GIP2 (Table S1), as es- cohesion proteins, both required for correct chromosome segre- sential for the recruitment of γ-tubulin complexes at microtubule gation. Centromeres are epigenetically specified by the presence (MT) organizing centers in Arabidopsis (7, 8). This function seems of the histone H3 variant (CENH3). In this study, we investigate the conservedinthehumanandSchizosaccharomyces pombe GIP role of the highly conserved γ-tubulin complex protein 3-interact- homologs named mitotic spindle organizing protein 1 (MZT1) ing proteins (GIPs) in Arabidopsis centromere regulation. We show (9–11). More recently, we localized GIPs at the nucleoplasm pe- that GIPs form a complex with CENH3 in cycling cells. GIP depletion riphery, close to chromocenters, where they modulate the nuclear in the gip1gip2 knockdown mutant leads to a decreased CENH3 architecture (12, 13). -
Gene Expression Changes Elicited by a Parasitic B Chromosome in the Grasshopper Eyprepocnemis Plorans Are Consistent with Its Phenotypic Effects
Gene expression changes elicited by a parasitic B chromosome in the grasshopper Eyprepocnemis plorans are consistent with its phenotypic effects Beatriz Navarro-Domínguez, María Martín-Peciña, Francisco J. Ruiz-Ruano, Josefa Cabrero, José María Corral, María Dolores López-León, et al. Chromosoma Biology of the Nucleus ISSN 0009-5915 Chromosoma DOI 10.1007/s00412-018-00689-y 1 23 Your article is protected by copyright and all rights are held exclusively by Springer- Verlag GmbH Germany, part of Springer Nature. This e-offprint is for personal use only and shall not be self-archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Chromosoma https://doi.org/10.1007/s00412-018-00689-y ORIGINAL ARTICLE Gene expression changes elicited by a parasitic B chromosome in the grasshopper Eyprepocnemis plorans are consistent with its phenotypic effects Beatriz Navarro-Domínguez1,2 & María Martín-Peciña1 & Francisco J. Ruiz-Ruano1 & Josefa Cabrero1 & José María Corral3,4 & María Dolores López-León1 & Timothy F. Sharbel3,5 & Juan Pedro M. Camacho1 Received: 24 August 2018 /Revised: 20 December 2018 /Accepted: 21 December 2018 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract Parasitism evokes adaptive physiological changes in the host, many of which take place through gene expression changes. -
Supernumerary B Chromosomes of Aegilops Speltoides Undergo Precise Elimination in Roots Early in Embryo Development
ARTICLE https://doi.org/10.1038/s41467-020-16594-x OPEN Supernumerary B chromosomes of Aegilops speltoides undergo precise elimination in roots early in embryo development Alevtina Ruban 1,2,6, Thomas Schmutzer 1,3,6, Dan D. Wu1,4, Joerg Fuchs1, Anastassia Boudichevskaia 1,2, Myroslava Rubtsova1,5, Klaus Pistrick 1, Michael Melzer1, Axel Himmelbach1, Veit Schubert1, Uwe Scholz 1 & ✉ Andreas Houben 1 1234567890():,; Not necessarily all cells of an organism contain the same genome. Some eukaryotes exhibit dramatic differences between cells of different organs, resulting from programmed elimina- tion of chromosomes or their fragments. Here, we present a detailed analysis of programmed B chromosome elimination in plants. Using goatgrass Aegilops speltoides as a model, we demonstrate that the elimination of B chromosomes is a strictly controlled and highly efficient root-specific process. At the onset of embryo differentiation B chromosomes undergo elimination in proto-root cells. Independent of centromere activity, B chromosomes demonstrate nondisjunction of chromatids and lagging in anaphase, leading to micro- nucleation. Chromatin structure and DNA replication differ between micronuclei and primary nuclei and degradation of micronucleated DNA is the final step of B chromosome elimination. This process might allow root tissues to survive the detrimental expression, or over- expression of B chromosome-located root-specific genes with paralogs located on standard chromosomes. 1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland OT Gatersleben, Germany. 2 KWS SAAT SE & Co. KGaA, 37574 Einbeck, Germany. 3 Martin Luther University Halle-Wittenberg, Institute for Agricultural and Nutritional Sciences, 06099 Halle (Saale), Germany. 4 Triticeae Research Institute, Sichuan Agricultural University, 611130 Wenjiang, China. -
Proctor Booklet
3.11 C: Meiosis Quiz PROCTOR VERSION 1. Which diagram best illustrates the processes of DNA replication, meiosis, and separation of sister chromatids? (A) Distractor Rationale: This answer suggests the student may understand that meiosis involves the splitting of homologous chromosomes, but does not understand that the first step in this process is the replication of all chromosomes to create a pair of two chromatids attached by a centromere (the X-shaped structures), and that the last step is the separation of sister chromatids in meiosis II to create four daughter cells, each containing a long chromosome and a short chromosome. (B) Distractor Rationale: This answer suggests the student may understand that meiosis involves the replication of all chromosomes and the pairing up and separation of homologous chromosomes, but does not understand that the final step in this process is the separation of sister chromatids in meiosis II to produce four haploid daughter cells, each with the haploid number of chromosomes. (C) Page 1 of 8 3.11 C: Meiosis Quiz PROCTOR VERSION Distractor Rationale: This answer suggests the student may understand that meiosis involves the replication of all chromosomes and the separation of sister chromatids, but does not realize that the first division involves the pairing up and separation of homologous chromosomes, and that this is then followed by a second division that produces four daughter cells, each with the haploid number of chromosomes. (D) Rationale: This answer suggests the student understands that the representation accurately depicts how the process of meiosis produces four haploid cells from one diploid parent cell: the formation of chromosomes, formation of the spindle complex, pairing of homologs, lining up of homologs on the equator, migration of chromosomes, and two divisions.