Continuous Variation in Y-Chromosome Structure of Rumex Acetosa
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The 50Th Anniversary of the Discovery of Trisomy 21: the Past, Present, and Future of Research and Treatment of Down Syndrome
REVIEW The 50th anniversary of the discovery of trisomy 21: The past, present, and future of research and treatment of Down syndrome Andre´Me´garbane´, MD, PhD1,2, Aime´ Ravel, MD1, Clotilde Mircher, MD1, Franck Sturtz, MD, PhD1,3, Yann Grattau, MD1, Marie-Odile Rethore´, MD1, Jean-Maurice Delabar, PhD4, and William C. Mobley, MD, PhD5 Abstract: Trisomy 21 or Down syndrome is a chromosomal disorder HISTORICAL REVIEW resulting from the presence of all or part of an extra Chromosome 21. Clinical description It is a common birth defect, the most frequent and most recognizable By examining artifacts from the Tumaco-La Tolita culture, form of mental retardation, appearing in about 1 of every 700 newborns. which existed on the border between current Colombia and Although the syndrome had been described thousands of years before, Ecuador approximately 2500 years ago, Bernal and Briceno2 it was named after John Langdon Down who reported its clinical suspected that certain figurines depicted individuals with Tri- description in 1866. The suspected association of Down syndrome with somy 21, making these potteries the earliest evidence for the a chromosomal abnormality was confirmed by Lejeune et al. in 1959. existence of the syndrome. Martinez-Frias3 identified the syn- Fifty years after the discovery of the origin of Down syndrome, the term drome in a terra-cotta head from the Tolteca culture of Mexico “mongolism” is still inappropriately used; persons with Down syn- in 500 patients with AD in which the facial features of Trisomy drome are still institutionalized. Health problems associated with that 21 are clearly displayed. -
Generating High Variability of B Chromosomes in Eyprepocnemis Plorans (Grasshopper)
Heredity 71 (1993) 352—362 Received 5 January 1993 Genetical Society of Great Britain Generating high variability of B chromosomes in Eyprepocnemis plorans (grasshopper) M. D. LOPEZ-LEON, J. CABRERO, M. C. PARDO, E. VISERAS, J. P. M. CAMACHO* & J. L. SANTOSI Departamento de Genética, Facu/tad de Ciencias, Un/versidad de Granada, E- 18071 Granada, Spa/n and tDepartamento de Genét/ca, Facultad de B/o/ogIa, Un/vers/dad Comp/utense de Madrid, E-28040 Madrid, Spa/n Twenty-eightprogeny analyses (PAs) performed on specimens of E. plorans collected from four natural Iberian populations have been informative about the transmission of rare B chromosome types or the de novo origin of some of them. At least ii rare B-types have been found in addition to the predominant ones: B1 in Daimuz, B2 in Jete and Salobreña, and B5 in Fuengirola. The presence in two controlled crosses of one embryo carrying a B-type which was absent in the parents suggests that these B variants (B20 and B )haveoriginated de novo. Eleven other PAs suggest that new B derivatives are recurrently arising in these populations. The most frequent B chromosome mutation was centromere misdivision that originated four different B-types (B2m1,B110,B210 and Bmjnj). Other rearrangements were pericentric inversions (B211, B212 and B213), inverse tandem fusion (B211), centric fusion (B11) and deletions (B2d1andB2d2).Thefour B derivatives produced by centromeric misdivision are significantly eliminated during sexual transmission, most probably owing to deficiencies in the control of chromosome movement by their hemicentromeres. Those derived from translocations showed Mendelian transmission but deletion B variants showed a tendency to elimination. -
Evolution on the X Chromosome: Unusual Patterns and Processes
REVIEWS Evolution on the X chromosome: unusual patterns and processes Beatriz Vicoso and Brian Charlesworth Abstract | Although the X chromosome is usually similar to the autosomes in size and cytogenetic appearance, theoretical models predict that its hemizygosity in males may cause unusual patterns of evolution. The sequencing of several genomes has indeed revealed differences between the X chromosome and the autosomes in the rates of gene divergence, patterns of gene expression and rates of gene movement between chromosomes. A better understanding of these patterns should provide valuable information on the evolution of genes located on the X chromosome. It could also suggest solutions to more general problems in molecular evolution, such as detecting selection and estimating mutational effects on fitness. Haldane’s rule Sex-chromosome systems have evolved independently the predictions of theoretical models of X-chromosome The disproportionate loss of many times, and have attracted much attention from evolution will shed light on the assumptions on which fitness to the heterogametic evolutionary geneticists. This work has mainly focused the models are based, such as the degree of dominance of sex in F1 hybrids between on the steps leading to the initial evolution of sex chro- mutations and the existence of opposing forces species. mosomes, and the genetic degeneration of Y and W of selection on males and females, leading to a better 1 Clade chromosomes . Here, we discuss the evolution of the understanding of the forces that shape the evolution of A group of species which share X chromosome in long-established sex-chromosome eukaryotic genomes. a common ancestor. -
Down's Syndrome Phenotype and Autosomal Gene Inactivation in a Child with Presumed
J Med Genet: first published as 10.1136/jmg.19.2.144 on 1 April 1982. Downloaded from 144 Case reports Down's syndrome phenotype and Case report autosomal gene inactivation in a The proband, a 3 2-year-old white female, was referred for evaluation of developmental delay and child with presumed (X;21) de novo dysmorphic features. She was the 1790 g,. 39 week translocation gestation product of a gravida 1, para 0, 15-year-old female. The pregnancy was complicated with SUMMARY A 32-year-old female with clinical recurrent urinary tract infections. The mother used features of Down's syndrome was found to have alcohol and tobacco in small quantities during the extra chromosome material on the long arm of pregnancy. The labour lasted ten hours and the one of the X chromosomes, 46,XXq+. The delivery was vaginal with vertex presentation. The parental karyotypes were normal. In the light baby breathed and cried spontaneously. Her of the clinical features of the proband and the immediate neonatal course was uneventful, but her subsequent weight gain was poor. She had several banding characteristics of the extra chromosome admissions to hospital for repeated diarrhoea, otitis material, the patient was thought to have a de media, and pneumonia. She had two 'febrile' seizures novo (X;21) translocation. The results of late for which she was placed on phenobarbital. Her replication studies with BUdR and enzyme development was markedly delayed. She smiled at superoxide dismutase (SOD) assays in the 4 months, turned over at 7 months, walked at 18 proband suggest that: (1) the presumed (X;21) months, and was not yet toilet trained. -
Gene Expression Changes Elicited by a Parasitic B Chromosome in the Grasshopper Eyprepocnemis Plorans Are Consistent with Its Phenotypic Effects
Gene expression changes elicited by a parasitic B chromosome in the grasshopper Eyprepocnemis plorans are consistent with its phenotypic effects Beatriz Navarro-Domínguez, María Martín-Peciña, Francisco J. Ruiz-Ruano, Josefa Cabrero, José María Corral, María Dolores López-León, et al. Chromosoma Biology of the Nucleus ISSN 0009-5915 Chromosoma DOI 10.1007/s00412-018-00689-y 1 23 Your article is protected by copyright and all rights are held exclusively by Springer- Verlag GmbH Germany, part of Springer Nature. This e-offprint is for personal use only and shall not be self-archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Chromosoma https://doi.org/10.1007/s00412-018-00689-y ORIGINAL ARTICLE Gene expression changes elicited by a parasitic B chromosome in the grasshopper Eyprepocnemis plorans are consistent with its phenotypic effects Beatriz Navarro-Domínguez1,2 & María Martín-Peciña1 & Francisco J. Ruiz-Ruano1 & Josefa Cabrero1 & José María Corral3,4 & María Dolores López-León1 & Timothy F. Sharbel3,5 & Juan Pedro M. Camacho1 Received: 24 August 2018 /Revised: 20 December 2018 /Accepted: 21 December 2018 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract Parasitism evokes adaptive physiological changes in the host, many of which take place through gene expression changes. -
Amplified Fragments of an Autosome-Borne Gene
G C A T T A C G G C A T genes Article Amplified Fragments of an Autosome-Borne Gene Constitute a Significant Component of the W Sex Chromosome of Eremias velox (Reptilia, Lacertidae) Artem Lisachov 1,2,* , Daria Andreyushkova 3, Guzel Davletshina 2,3, Dmitry Prokopov 3 , Svetlana Romanenko 3 , Svetlana Galkina 4 , Alsu Saifitdinova 5 , Evgeniy Simonov 1, Pavel Borodin 2,6 and Vladimir Trifonov 3,6 1 Institute of Environmental and Agricultural Biology (X-BIO), University of Tyumen, Lenina str. 23, 625003 Tyumen, Russia; [email protected] 2 Institute of Cytology and Genetics SB RAS, Acad. Lavrentiev Ave. 10, 630090 Novosibirsk, Russia; [email protected] (G.D.); [email protected] (P.B.) 3 Institute of Molecular and Cellular Biology SB RAS, Acad. Lavrentiev Ave. 8/2, 630090 Novosibirsk, Russia; [email protected] (D.A.); [email protected] (D.P.); [email protected] (S.R.); [email protected] (V.T.) 4 Department of Genetics and Biotechnology, Saint Petersburg State University, Universitetskaya Emb. 7–9, 199034 Saint Petersburg, Russia; [email protected] 5 Department of Human and Animal Anatomy and Physiology, Herzen State Pedagogical University of Russia, Moyka Emb. 48, 191186 Saint Petersburg, Russia; saifi[email protected] 6 Novosibirsk State University, Pirogova str. 3, 630090 Novosibirsk, Russia Citation: Lisachov, A.; * Correspondence: [email protected] Andreyushkova, D.; Davletshina, G.; Prokopov, D.; Romanenko, S.; Abstract: Heteromorphic W and Y sex chromosomes often experience gene loss and heterochroma- Galkina, S.; Saifitdinova, A.; Simonov, tinization, which is frequently viewed as their “degeneration”. -
Supernumerary B Chromosomes of Aegilops Speltoides Undergo Precise Elimination in Roots Early in Embryo Development
ARTICLE https://doi.org/10.1038/s41467-020-16594-x OPEN Supernumerary B chromosomes of Aegilops speltoides undergo precise elimination in roots early in embryo development Alevtina Ruban 1,2,6, Thomas Schmutzer 1,3,6, Dan D. Wu1,4, Joerg Fuchs1, Anastassia Boudichevskaia 1,2, Myroslava Rubtsova1,5, Klaus Pistrick 1, Michael Melzer1, Axel Himmelbach1, Veit Schubert1, Uwe Scholz 1 & ✉ Andreas Houben 1 1234567890():,; Not necessarily all cells of an organism contain the same genome. Some eukaryotes exhibit dramatic differences between cells of different organs, resulting from programmed elimina- tion of chromosomes or their fragments. Here, we present a detailed analysis of programmed B chromosome elimination in plants. Using goatgrass Aegilops speltoides as a model, we demonstrate that the elimination of B chromosomes is a strictly controlled and highly efficient root-specific process. At the onset of embryo differentiation B chromosomes undergo elimination in proto-root cells. Independent of centromere activity, B chromosomes demonstrate nondisjunction of chromatids and lagging in anaphase, leading to micro- nucleation. Chromatin structure and DNA replication differ between micronuclei and primary nuclei and degradation of micronucleated DNA is the final step of B chromosome elimination. This process might allow root tissues to survive the detrimental expression, or over- expression of B chromosome-located root-specific genes with paralogs located on standard chromosomes. 1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland OT Gatersleben, Germany. 2 KWS SAAT SE & Co. KGaA, 37574 Einbeck, Germany. 3 Martin Luther University Halle-Wittenberg, Institute for Agricultural and Nutritional Sciences, 06099 Halle (Saale), Germany. 4 Triticeae Research Institute, Sichuan Agricultural University, 611130 Wenjiang, China. -
Comprehensive Chromosomal and Mitochondrial Copy Number Profiling in Human IVF Embryos
ARTICLE IN PRESS 1bs_bs_query Q2 Article 2bs_bs_query 3bs_bs_query Comprehensive chromosomal and mitochondrial copy 4bs_bs_query 5bs_bs_query number profiling in human IVF embryos 6bs_bs_query Q1 a,1, a,1 a a 7bs_bs_query Wei Shang *, Yunshan Zhang , Mingming Shu , Weizhou Wang , a a b b, b b 8bs_bs_query Likun Ren , Fu Chen , Lin Shao , Sijia Lu *, Shiping Bo , Shujie Ma , b 9bs_bs_query Yumei Gao a 10bs_bs_query Assisted Reproductive Centre of the Department of Gynaecology and Obstetrics, PLA Naval General Hospital, 11 bs_bs_query Haidian District, Beijing 100048, China b 12bs_bs_query Yikon Genomics, Fengxian District, Shanghai 201400, China 13bs_bs_query 14bs_bs_query 15bs_bs_query Wei Shang has been the Associate Chief Physician at the Department of Gynaecology and Obstetrics, PLA Naval 16bs_bs_query General Hospital, Beijing, since 2005. Her research interests focus on assisted reproduction technology, repro- 17bs_bs_query ductive endocrinology and ovary dysfunction. 18bs_bs_query 19bs_bs_query KEY MESSAGE 20bs_bs_query Using a validated approach called MALBAC-NGS, a comprehensive chromosomal and mitochondrial copy number 21bs_bs_query profiling in human embryos was conducted, and correlations of mitochondria quantity with maternal age and 22bs_bs_query embryo stage were observed. The strategy might be used to perform an advanced PGS targeting both chro- 23bs_bs_query mosomal and mitochondria copy numbers. 24bs_bs_query 25bs_bs_query ABSTRACT 26bs_bs_query 27bs_bs_query Single cell whole genome sequencing helps to decipher the genome -
Molecular Evolution of a Y Chromosome to Autosome Gene Duplication in Drosophila Research Article
Molecular Evolution of a Y Chromosome to Autosome Gene Duplication in Drosophila Kelly A. Dyer,*,1 Brooke E. White,1 Michael J. Bray,1 Daniel G. Pique´,1 and Andrea J. Betancourt* ,2 1Department of Genetics, University of Georgia 2Institute of Evolutionary Biology, University of Edinburgh, Ashworth Labs, Edinburgh, United Kingdom Present address: Institute for Population Genetics, University of Veterinary Medicine Vienna, Vienna 1210, Austria *Corresponding author: [email protected], [email protected]. Associate editor: Jody Hey Abstract In contrast to the rest of the genome, the Y chromosome is restricted to males and lacks recombination. As a result, Research article Y chromosomes are unable to respond efficiently to selection, and newly formed Y chromosomes degenerate until few genes remain. The rapid loss of genes from newly formed Y chromosomes has been well studied, but gene loss from highly degenerate Y chromosomes has only recently received attention. Here, we identify and characterize a Y to autosome duplication of the male fertility gene kl-5 that occurred during the evolution of the testacea group species of Drosophila. The duplication was likely DNA based, as other Y-linked genes remain on the Y chromosome, the locations of introns are conserved, and expression analyses suggest that regulatory elements remain linked. Genetic mapping reveals that the autosomal copy of kl-5 resides on the dot chromosome, a tiny autosome with strongly suppressed recombination. Molecular evolutionary analyses show that autosomal copies of kl-5 have reduced polymorphism and little recombination. Importantly, the rate of protein evolution of kl-5 has increased significantly in lineages where it is on the dot versus Y linked. -
And Abdominal-B in Drosqbhilu Melanogaster
Copyright 0 1995 by the Genetics Society of America and Trans Interactions Between the iab Regulatory Regions and abdominal-A and Abdominal-B in Drosqbhilu melanogaster Jd Eileen Hendrickson and Shigeru Sakonju Department of Human Genetics, Howard Hughes Medical Institute, University of Utah, Salt Lake City, Utah 841 12 Manuscript received August 15, 1994 Accepted for publication November 8, 1994 ABSTRACT The infra-abdominal ( iab) elements in the bithorax complex of Drosophila melanogaster regulate the transcription of the homeotic genesabdominal-A ( abd-A) and Abdominal-B ( Abd-B) in cis. Here we describe two unusual aspects of regulation by the iab elements, revealed by an analysis of an unexpected comple- mentation between mutations in the Abd-B transcription unit and these regulatory regions. First,we find that iab-6 and iab7 can regulate Abd-B in trans. This iab trans regulation is insensitive to chromosomal rearrangements that disrupt transvection effects at the nearby Ubx locus. In addition, we show that a transposed Abd-B transcription unitand promoter on the Ychromosomecan be activatedby iabelements located on the third chromosome. These results suggest that the iab regions can regulate their target promoter located ata distant sitein the genomein a manner that is much less dependent on homologue pairing than other transvection effects.The iab regulatory regionsmay have a very strong affinity for the target promoter, allowing them to interactwith each other despite the inhibitory effectsof chromosomal rearrangements. Second, by generating abd-A mutations on rearrangement chromosomes that break in the iab-7 region, we show that these breaks induce theiab elements to switch their target promoter from Abd-B to abd-A. -
Comparative Mapping of DNA Markers from the Familial Alzheimer Mouse Chromosomes 16 and 17
Proc. Natl. Acad. Sci. USA Vol. 85, pp. 6032-6036, August 1988 Genetics Comparative mapping of DNA markers from the familial Alzheimer disease and Down syndrome regions of human chromosome 21 to mouse chromosomes 16 and 17 (restriction fragment length polymorphism/genetic linkage analysis/recombinant inbred strains/interspecific backcross) SHIRLEY V. CHENG*, JOSEPH H. NADEAUt, RUDOLPH E. TANZI*, PAUL C. WATKINSt, JAYASHREE JAGADESH*, BENJAMIN A. TAYLORt, JONATHAN L. HAINES*, NICOLETTA SACCHI§, AND JAMES F. GUSELLA* *Neurogenetics Laboratoiy, Massachusetts General Hospital and Department of Genetics, Harvard Medical School, Boston, MA 02114; tThe Jackson Laboratory, Bar Harbor, ME 04609; tIntegrated Genetics, Inc., 31 New York Avenue, Framingham, MA 01701; and §Laboratory of Molecular Oncology, National Cancer Institute, Frederick, MD 21701 Communicated by Elizabeth S. Russell, April 18, 1988 ABSTRACT Mouse trisomy 16 has been proposed as an mouse genome, mouse trisomy 16 has been used as an animal animal model of Down syndrome (DS), since this chromosome model of DS (9, 10). contains homologues of several loci from the q22 band of Interest in human chromosome 21 has increased with the human chromosome 21. The recent mapping of the defect recent localizations of the defect causing familial Alzheimer causing familial Alzheimer disease (FAD) and the locus encod- disease (FAD) and the gene (APP) encoding the precursor for ing the Alzheiner amyloid (3 precursor protein (APP) to human amyloid ,8 protein to the proximal half of 21q (11, 12). FAD chromosome 21 has prompted a more detailed examination of is the autosomal dominantly inherited form of the common the extent ofconservation ofthis linkage group between the two late-onset neurodegenerative disorder that results in the species. -
How Next-Generation Sequencing Has Aided Our Understanding of the Sequence Composition and Origin of B Chromosomes
G C A T T A C G G C A T genes Review How Next-Generation Sequencing Has Aided Our Understanding of the Sequence Composition and Origin of B Chromosomes Alevtina Ruban ID , Thomas Schmutzer, Uwe Scholz ID and Andreas Houben * ID Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben, 06466 Seeland, Germany; [email protected] (A.R.); [email protected] (T.S.); [email protected] (U.S.) * Correspondence: [email protected]; Tel.: +49-(0)-39482-5486 Received: 28 August 2017; Accepted: 24 October 2017; Published: 25 October 2017 Abstract: Accessory, supernumerary, or—most simply—B chromosomes, are found in many eukaryotic karyotypes. These small chromosomes do not follow the usual pattern of segregation, but rather are transmitted in a higher than expected frequency. As increasingly being demonstrated by next-generation sequencing (NGS), their structure comprises fragments of standard (A) chromosomes, although in some plant species, their sequence also includes contributions from organellar genomes. Transcriptomic analyses of various animal and plant species have revealed that, contrary to what used to be the common belief, some of the B chromosome DNA is protein-encoding. This review summarizes the progress in understanding B chromosome biology enabled by the application of next-generation sequencing technology and state-of-the-art bioinformatics. In particular, a contrast is drawn between a direct sequencing approach and a strategy based on a comparative genomics as alternative routes that can be taken towards the identification of B chromosome sequences. Keywords: B chromosome; supernumerary chromosome; evolution; next generation sequencing 1. Recent Discoveries Related to the Origin and Evolution of B Chromosomes The origin and evolution of the B chromosomes, which appear to make a non-essential contribution to the overall genome, have puzzled cytogeneticists for over a century.