Roles of Molecular Chaperones in Protein Targeting to Mitochondria
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Control of Protein Function
3 Control of Protein Function In the cell, precise regulation of protein function is essential to avoid chaos. This chapter describes the most important molecular mechanisms by which protein function is regulated in cells. These range from control of a protein’s location and lifetime within the cell to the binding of regulatory molecules and covalent modifications such as phosphorylation that rapidly switch protein activity on or off. Also covered here are the nucleotide-driven switches in conformation that underlie the action of motor proteins and that regulate many signal transduction pathways. 3-0 Overview: Mechanisms of Regulation 3-1 Protein Interaction Domains 3-2 Regulation by Location 3-3 Control by pH and Redox Environment 3-4 Effector Ligands: Competitive Binding and Cooperativity 3-5 Effector Ligands: Conformational Change and Allostery 3-6 Protein Switches Based on Nucleotide Hydrolysis 3-7 GTPase Switches: Small Signaling G Proteins 3-8 GTPase Switches: Signal Relay by Heterotrimeric GTPases 3-9 GTPase Switches: Protein Synthesis 3-10 Motor Protein Switches 3-11 Regulation by Degradation 3-12 Control of Protein Function by Phosphorylation 3-13 Regulation of Signaling Protein Kinases: Activation Mechanism 3-14 Regulation of Signaling Protein Kinases: Cdk Activation 3-15 Two-Component Signaling Systems in Bacteria 3-16 Control by Proteolysis: Activation of Precursors 3-17 Protein Splicing: Autoproteolysis by Inteins 3-18 Glycosylation 3-19 Protein Targeting by Lipid Modifications 3-20 Methylation, N-acetylation, Sumoylation and Nitrosylation 3-0 Overview: Mechanisms of Regulation Protein function in living cells is precisely regulated A typical bacterial cell contains a total of about 250,000 protein molecules (comprising different amounts of each of several thousand different gene products), which are packed into a volume so small that it has been estimated that, on average, they are separated from one another by a distance that would contain only a few molecules of water. -
"Hsp70 Chaperones"
Hsp70 Chaperones Advanced article Elizabeth A Craig, University of Wisconsin, Madison, Wisconsin, USA Article Contents . Introduction Jaroslaw Marszalek, University of Gdansk, Gdansk, Poland . Hsp70:Client Protein Interaction Cycle . Proliferation of Hsp70 and J-protein Genes . Function and Evolution of Mitochondrial Hsp70 Systems . Conclusions: Versatility of Hsp70 System Allows for Adaptation to New Functions Online posting date: 15th March 2011 Via their interaction with client proteins, Hsp70 molecu- stress. In some cases they also facilitate transfer of client lar chaperone machines function in a variety of cellular proteins to proteolytic systems, particularly when refolding processes, including protein folding, translocation of into the native state is unachievable. See also: Chaperones, proteins across membranes and assembly/disassembly of Chaperonin and Heat-Shock Proteins The ability of Hsp70 chaperones to be involved in such protein complexes. Such machines are composed of a core diverse cellular functions, whereas relying on a single bio- Hsp70, as well as a J-protein and a nucleotide exchange chemical activity, an adenosine triphosphate (ATP)- factor as co-chaperones. These co-factors regulate the dependent client binding and release cycle, is remarkable. cycle of adenosine triphosphate (ATP) hydrolysis and Here, to illustrate the molecular mechanisms and evo- nucleotide exchange, which is critical for Hsp70’s inter- lutionary history behind the specialisation of Hsp70 sys- action with client proteins. Cellular compartments often tems we focus on mitochondrial Hsp70 systems, as they contain multiple Hsp70s, J-proteins and nucleotide exemplify two major strategies of Hsp70 specialisation: exchange factors. The capabilities of Hsp70s to carry out (i) amplification and diversification of HSP70 genes and diverse cellular functions can result from either special- (ii) multiplication and specialisation of genes encoding isation of an Hsp70 or by interaction of a multifunctional their J-proteins co-chaperones (Figure 1). -
1519038862M28translationand
Paper No. : 15 Molecular Cell Biology Module : 28 Translation and Post-translation Modifications in Eukaryotes Development Team Principal Investigator : Prof. Neeta Sehgal Department of Zoology, University of Delhi Co-Principal Investigator : Prof. D.K. Singh Department of Zoology, University of Delhi Paper Coordinator : Prof. Kuldeep K. Sharma Department of Zoology, University of Jammu Content Writer : Dr. Renu Solanki, Deen Dayal Upadhyaya College Dr. Sudhida Gautam, Hansraj College, University of Delhi Mr. Kiran K. Salam, Hindu College, University of Delhi Content Reviewer : Prof. Rup Lal Department of Zoology, University of Delhi 1 Molecular Genetics ZOOLOGY Translation and Post-translation Modifications in Eukaryotes Description of Module Subject Name ZOOLOGY Paper Name Molecular Cell Biology; Zool 015 Module Name/Title Cell regulatory mechanisms Module Id M28: Translation and Post-translation Modifications in Eukaryotes Keywords Genome, Proteome diversity, post-translational modifications, glycosylation, phosphorylation, methylation Contents 1. Learning Objectives 2. Introduction 3. Purpose of post translational modifications 4. Post translational modifications 4.1. Phosphorylation, the addition of a phosphate group 4.2. Methylation, the addition of a methyl group 4.3. Glycosylation, the addition of sugar groups 4.4. Disulfide bonds, the formation of covalent bonds between 2 cysteine amino acids 4.5. Proteolysis/ Proteolytic Cleavage 4.6. Subunit binding to form a multisubunit protein 4.7. S-nitrosylation 4.8. Lipidation 4.9. Acetylation 4.10. Ubiquitylation 4.11. SUMOlytion 4.12. Vitamin C-Dependent Modifications 4.13. Vitamin K-Dependent Modifications 4.14. Selenoproteins 4.15. Myristoylation 5. Chaperones: Role in PTM and mechanism 6. Role of PTMs in diseases 7. Detecting and Quantifying Post-Translational Modifications 8. -
Protein Targeting Or Protein Sorting
Protein targeting or Protein sorting Refer Page 1068 to 1074 Principles of Biochemistry by Lehninger & Page 663 Baltimore Mol Cell Biology • Protein targeting or Protein sorting is the process of delivery of newly synthesized proteins to their proper cellular destinations • Proteins are sorted to the endoplasmic reticulum (ER), mitochondria, chloroplasts, lysosomes, peroxisomes, and the nucleus by different mechanisms • The process can occur either during protein synthesis or soon after synthesis of proteins by translation at the ribosome. • Most of the integral membrane proteins, secretory proteins and lysosomal proteins are sorted to ER lumen from where these proteins are modified for further sorting • For membrane proteins, targeting leads to insertion of the protein into the lipid bilayer • For secretory/water-soluble proteins, targeting leads to translocation of the entire protein across the membrane into the aqueous interior of the organelle. • Protein destined for cytosol simply remain where they are synthesized • Mitochondrial and chloroplast proteins are first completely synthesized and released from ribosomes. These are then bound by cytosolic chaperone proteins and delivered to receptor on target organelle. • Nuclear proteins such as DNA and RNA polymerases, histones, topoisomerases and proteins that regulate gene expression contain Nuclear localization signal (NLS) which is not removed after the protein is translocated. Unlike ER localization signal sequence which is at N terminal, NLS ca be located almost anywhere along the -
Chaperonin Function: Folding by Forced Unfolding
R EPORTS (1985); N. Romani et al., ibid. 169, 1169 (1989); C. migrated was measured with the clonotypic antibody 26. J. G. Cyster, J. Exp. Med. 189, 447 (1999). Heufler et al., ibid. 176, 1221 (1992). to TCR KJ1-26 (28). Overnight incubation of day 2 27. G. G. MacPherson, C. D. Jenkins, M. J. Stein, C. Ed- 23. R. Bonecchi et al., ibid. 187, 129 (1998). draining lymph node cells (at 107 cells/ml) in medium wards, J. Immunol. 154, 1317 (1995). 24. Anti-OVA (DO11.10) T cell receptor (TCR) transgenic containing interleukin-2 (IL-2) (4 ng/ml) increased 28. K. Haskins et al., J. Exp. Med. 157, 1149 (1983). 1 lymph node cells (5 3 106 cells) were transferred to the sensitivity of activated KJ1-26 cells to MDC 29. We thank R. Locksley, S. Luther, K. Reif, and A. Weiss for comments on the manuscript; M. Ansel for help BALB/c mice that were immunized 1 day later with (14). Therefore, IL-2–cultured cells were used in ex- with the in vivo transfer experiments; and C. 100-mg OVA in Freund’s complete adjuvant (25). periments to detect chemokine production by puri- McArthur for cell sorting. Supported in part by NIH fied lymph node DCs and stromal cells. Draining (pool of brachial, axillary, and inguinal) and grant AI-40098, the Pew Foundation (J.G.C.), and the nondraining (mesenteric) lymph node cells were iso- 25. E. R. Kearney, K. A. Pape, D. Y. Loh, M. K. Jenkins, American Lung Association (H.L.T.). lated 1 to 5 days later and used in MDC chemotaxis Immunity 1, 327 (1994); K. -
Chaperonin-Assisted Protein Folding: a Chronologue
Quarterly Reviews of Chaperonin-assisted protein folding: Biophysics a chronologue cambridge.org/qrb Arthur L. Horwich1,2 and Wayne A. Fenton2 1Howard Hughes Medical Institute, Yale School of Medicine, Boyer Center, 295 Congress Avenue, New Haven, CT 06510, USA and 2Department of Genetics, Yale School of Medicine, Boyer Center, 295 Congress Avenue, New Invited Review Haven, CT 06510, USA Cite this article: Horwich AL, Fenton WA (2020). Chaperonin-assisted protein folding: a Abstract chronologue. Quarterly Reviews of Biophysics This chronologue seeks to document the discovery and development of an understanding of – 53, e4, 1 127. https://doi.org/10.1017/ oligomeric ring protein assemblies known as chaperonins that assist protein folding in the cell. S0033583519000143 It provides detail regarding genetic, physiologic, biochemical, and biophysical studies of these Received: 16 August 2019 ATP-utilizing machines from both in vivo and in vitro observations. The chronologue is orga- Revised: 21 November 2019 nized into various topics of physiology and mechanism, for each of which a chronologic order Accepted: 26 November 2019 is generally followed. The text is liberally illustrated to provide firsthand inspection of the key Key words: pieces of experimental data that propelled this field. Because of the length and depth of this Chaperonin; GroEL; GroES; Hsp60; protein piece, the use of the outline as a guide for selected reading is encouraged, but it should also be folding of help in pursuing the text in direct order. Author for correspondence: Arthur L. Horwich, E-mail: [email protected] Table of contents I. Foundational discovery of Anfinsen and coworkers – the amino acid sequence of a polypeptide contains all of the information required for folding to the native state 7 II. -
Targeting the Ubiquitin System in Glioblastoma', Frontiers in Oncology
Citation for published version: Licchesi, J 2020, 'Targeting the Ubiquitin System in Glioblastoma', Frontiers in Oncology. https://doi.org/10.3389/fonc.2020.574011 DOI: 10.3389/fonc.2020.574011 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link to publication University of Bath Alternative formats If you require this document in an alternative format, please contact: [email protected] General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 24. Sep. 2021 REVIEW published: 25 November 2020 doi: 10.3389/fonc.2020.574011 Targeting the Ubiquitin System in Glioblastoma Nico Scholz 1, Kathreena M. Kurian 2, Florian A. Siebzehnrubl 3 and Julien D. F. Licchesi 1* 1 Department of Biology & Biochemistry, University of Bath, Bath, United Kingdom, 2 Brain Tumour Research Group, Institute of Clinical Neurosciences, University of Bristol, Bristol, United Kingdom, 3 Cardiff University School of Biosciences, European Cancer Stem Cell Research Institute, Cardiff, United Kingdom Glioblastoma is the most common primary brain tumor in adults with poor overall outcome and 5-year survival of less than 5%. Treatment has not changed much in the last decade or so, with surgical resection and radio/chemotherapy being the main options. -
Structure-Function Relationship and Their Role in Protein Folding
Chapter 8 1 Molecular Chaperones: Structure-Function 2 Relationship and their Role in Protein Folding 3 Bhaskar K. Chatterjee, Sarita Puri, Ashima Sharma, Ashutosh Pastor, 4 and Tapan K. Chaudhuri 5 Abstract During heat shock conditions a plethora of proteins are found to play a 6 role in maintaining cellular homeostasis. They play diverse roles from folding of 7 non-native proteins to the proteasomal degradation of harmful aggregates. A few 8 out of these heat shock proteins (Hsp) help in the folding of non-native substrate 9 proteins and are termed as molecular chaperones. Various structural and functional 10 adaptations make them work efficiently under both normal and stress conditions. 11 These adaptations involve transitions to oligomeric structures, thermal stability, 12 efficient binding affinity for substrates and co-chaperones, elevated synthesis during 13 shock conditions, switching between ‘holding’ and ‘folding’ functions etc. Their 14 ability to function under various kinds of stress conditions like heat shock, cancers, 15 neurodegenerative diseases, and in burdened cells due to recombinant protein pro- 16 duction makes them therapeutically and industrially important biomolecules. 17 Keywords Chaperone assisted folding · Heat shock · Molecular chaperones · 18 Protein folding · Structure-function of chaperones 19 Abbreviations 20 ACD α-crystallin domain 21 ADP Adenosine di-phosphate 22 ATP Adenosine tri-phosphate 23 CCT Chaperonin containing TCP-1 24 CIRCE Controlling inverted repeat of chaperone expression 25 Bhaskar K. Chatterjee, Sarita Puri, Ashima Sharma, and Ashutosh Pastor authors are equally contributed. B. K. Chatterjee · S. Puri · A. Sharma · A. Pastor · T. K. Chaudhuri (*) Kusuma School of Biological Sciences, Indian Institute of Technology Delhi, HauzKhas, New Delhi, India e-mail: [email protected] © Springer International Publishing AG 2018 181 A. -
Hsp70 in Cancer: Partner Or Traitor to Immune System
REVIEW ARTICLE Iran J Allergy Asthma Immunol December 2019; 18(6):589-604. Hsp70 in Cancer: Partner or Traitor to Immune System Mehdi Asghari Vostakolaei1,2, Jalal Abdolalizadeh1,3, Mohammad Saeid Hejazi2,4,5, Shirafkan Kordi6, Ommoleila Molavi2,7 1 Drug Applied Research Center, Tabriz University of Medical Sciences, Tabriz, Iran 2 Department of Pharmaceutical Biotechnology, Faculty of pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran 3 Paramedical Faculty, Tabriz University of Medical Sciences, Tabriz, Iran 4 Department of Molecular Medicine, School of Advanced Biomedical Sciences, Tabriz University of Medical Sciences, Tabriz, Iran 5 Molecular Medicine Research Center, Biomedicine Institute, Tabriz University of Medical Sciences, Tabriz, Iran 6 Department of Medical Biotechnology, Faculty of Advanced Medical Sciences, Tabriz University of Medical Sciences, Tabriz, Iran 7 Biotechnology Research Center, Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran Received: 19 August 2019; Received in revised form: 5 September 2019; Accepted: 14 September 2019 ABSTRACT Heat shock protein 70.1 (Hsp70.1), also known as Hsp70, is a highly conserved member of the heat shock protein family that exists in all living organisms and determines the protein fate as molecular chaperones. Hsp70 basal expression is undetectable or low in most unstressed normal cells, however, its abundant presence in several types of human cancer cells is reported. Several studies support upregulated Hsp70 involved in tumor progression and drug resistance through modulation of cell death pathways and suppresses anticancer immune responses. However, numerous studies have confirmed that Hsp70 can also induce anticancer immune responses through the activation of immune cells in particular antigen-presenting cells (APCs). -
Role of CCT Chaperonin in the Disassembly of Mitotic Checkpoint Complexes
Role of CCT chaperonin in the disassembly of mitotic checkpoint complexes Sharon Kaisaria, Danielle Sitry-Shevaha, Shirly Miniowitz-Shemtova, Adar Teichnera, and Avram Hershkoa,1 aUnit of Biochemistry, Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 31096, Israel Contributed by Avram Hershko, December 14, 2016 (sent for review November 23, 2016; reviewed by Michele Pagano and Alexander Varshavsky) The mitotic checkpoint system prevents premature separation of thebindingoftheATPasetoMCC(13,14).TheenergyofATP sister chromatids in mitosis and thus ensures the fidelity of hydrolysis is apparently used in this process to promote a confor- chromosome segregation. When this checkpoint is active, a mitotic mational change of Mad2 back from C-Mad2 to O-Mad2, leading checkpoint complex (MCC), composed of the checkpoint proteins to loss of its affinity for Cdc20 in MCC and thus to Mad2 release. Mad2, BubR1, Bub3, and Cdc20, is assembled. MCC inhibits the By the action of TRIP13 and p31comet, MCC is converted to a ubiquitin ligase anaphase promoting complex/cyclosome (APC/C), remnant, called BC-1, in which Cdc20 is still associated with whose action is necessary for anaphase initiation. When the check- BubR1 (15). Cdc20 is released from BubR1 in MCC by a dif- point signal is turned off, MCC is disassembled, a process required ferent process involving the phosphorylation of Cdc20 by Cdk1 for exit from checkpoint-arrested state. Different moieties of MCC (16). We noticed, however, that a considerable part of the release are disassembled by different ATP-requiring processes. Previous of Cdc20 from MCC was due to a phosphorylation-independent, work showed that Mad2 is released from MCC by the joint action comet but ATP-dependent process (16). -
The Chaperonin Folding Machine
Review TRENDS in Biochemical Sciences Vol.27 No.12 December 2002 627 32 He, B. et al. (1998) Glycogen synthase kinase 3β DNA damage-induced phosphorylation. Science regulates transcriptional activity. Mol. Cell 6, and extracellular signal-regulated kinase 292, 1910–1915 539–550 inactivate heat shock transcription factor 1 by 43 Waterman, M.J. et al. (1998) ATM-dependent 53 Beals, C.R. et al. (1997) Nuclear localization of facilitating the disappearance of transcriptionally activation of p53 involves dephosphorylation and NF-ATc by a calcineurin-dependent, active granules after heat shock. Mol. Cell. Biol. association with 14-3-3 proteins. Nat. Genet. 19, cyclosporin-sensitive intramolecular interaction. 18, 6624–6633 175–178 Genes Dev. 11, 824–834 33 Xia, W. et al. (1998) Transcriptional activation of 44 Stavridi, E.S. et al. (2001) Substitutions that 54 Porter, C.M. et al. (2000) Identification of amino heat shock factor HSF1 probed by phosphopeptide compromise the ionizing radiation-induced acid residues and protein kinases involved in the analysis of factor 32P-labeled in vivo. J. Biol. association of p53 with 14-3-3 proteins also regulation of NFATc subcellular localization. Chem. 273, 8749–8755 compromise the ability of p53 to induce cell cycle J. Biol. Chem. 275, 3543–3551 34 Dai, R. et al. (2000) c-Jun NH2-terminal kinase arrest. Cancer Res. 61, 7030–7033 55 Yang, T.T. et al. (2002) Phosphorylation of NFATc4 targeting and phosphorylation of heat shock 45 Kaeser, M.D. and Iggo, R.D. (2002) Chromatin by p38 mitogen-activated protein kinases. factor-1 suppress its transcriptional activity. -
Chaperonin 10 from Escherichia Coli (C7438)
Chaperonin 10 from Escherichia coli recombinant, expressed in E. coli overproducing strain Product Number C7438 Storage Temperature 2–8 C Synonym: GroES The folding activity of a 1:1 molar mixture of GroEL and GroES is determined using urea-denatured rhodanese. Product Description At least a 2-fold increase in reactivation of rhodanese is The chaperonin proteins GroES (Chaperonin 10) and observed compared to spontaneous reactivation. GroEL (Chaperonin 60) are heat shock proteins that assist the folding of nascent and heat-destabilized The inhibition of the ATPase activity of GroEL by GroES proteins.1 GroES (Chaperonin 10) is a complex of at a molar ratio of 2:1 (GroES:GroEL) is determined to 6-8 units of a 10 kDa monomer, with a multimer be 40-60%. molecular mass of 60-80 kDa. Aggregation studies on chaperonin 10 monomer from different species have Purity: 95% (SDS-PAGE) been reported.2 GroEL (Chaperonin 60) is a tetradecamer of a 58 kDa monomer, with a multimer Precautions and Disclaimer molecular mass of 800 kDa. For R&D use only. Not for drug, household, or other uses. Please consult the Safety Data Sheet for GroEL and GroES can be used to stabilized labile information regarding hazards and safe handling proteins and reactivate denatured proteins. Refolding practices. and reactivation of denatured enzymes such as the photosynthetic enzyme RuBisCO,3 mitochondrial Preparation Instructions rhodanese,4 and glutamine synthase5 have been The product is soluble in water (0.5 mg/mL). reported. Storage/Stability Folding of proteins by these chaperonins requires It is recommended to store the product desiccated at GroEL, Mg-ATP (GroEL has ATPase activity), and in 2–8 C.