E v o l D i r
November 1, 2008
Month in Review
Forward
This listing is intended to aid researchers in population genetics and evolution. To add your name to the directory listing, to change anything regarding this listing or to complain please send me mail at [email protected]. Listing in this directory is neither limited nor censored and is solely to help scientists reach other members in the same field and to serve as a means of communication. Please do not add to the junk e-mail unless necessary. The nature of the messages should be “bulletin board” in nature, if there is a “discussion” style topic that you would like to post please send it to the USENET discussion groups. Instructions for the EvolDir are listed at the end of this message.
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Forward ...... 1
Conferences ...... 2
GradStudentPositions ...... 11
Jobs ...... 31
Other ...... 64
PostDocs ...... 82
WorkshopsCourses ...... 111
Instructions ...... 114
Afterward ...... 115 2 EvolDir November 1, 2008
Conferences
Berlin CelebratingDarwin Mar3-6 ...... 2 NaturalisMuseum Leiden IslandEvolution Feb12-13 . 6 Christchurch NewZealand BIOED2009 Feb12-15 . . . . 3 Netherlands PhDStudents Aug14-19 ...... 8 KansasCity Genomics Nov14-16 ...... 3 NHM London YoungSystematists Dec2 ...... 8 KansasCity Genomics Nov14-16 FinalUpdate ...... 4 Stellenbosch InvasiveSpecies Aug ...... 9 London e-Bioshpere Jun1-5 2 ...... 5 UCIrvine MEEGID IX Oct30-Nov1 registration 2 . . .9 London EvoDevo Nov7 ...... 6 UStAndrews HumanBehaviourEvolution Apr6-8 . . . 10 Marseilles 13thEvolutionaryBiol Sep22-25 ...... 6 Marseilles EvolutionaryBiol Sep22-25 ...... 6
On behalf of the organising committee we would like to invite you to this conference, which will take place from *3th - 6th March 2009 *at the Humboldt-University Berlin CelebratingDarwin Mar3-6 and the Museum of Natural History in Berlin, Germany. The meeting will consist of sessions with several invited speakers and open sessions with short presentations. In addition, there will be the possibility to show posters. Dear evolutionary biologists, Darwin’s 1859 book “On The meeting focuses on three major themes: the Origin of Species” contained only a single figure de- *1) Innovations in analyses of molecular and morpho- picting a tree diagram of species origins and relation- logical data* ships. This little scheme was nevertheless the start- ing point for the ubiquity of phylogenetic trees in to- *2) Molecular phylogeny: new markers and phyloge- day’s zoology. Every week numerous cladograms repre- nomic analyses* senting animal relationships at all levels are published. *3) The indispensability of morphology * An increasing number of these articles deal with the phylogeny of the major groups of multicellular animals The conference is organised by the Priority Program (Metazoa). However, these publications show that nei- “Deep Metazoan Phylogeny” of the German Science ther sequence data nor available morphological charac- Foundation (DFG). The project is a joint effort of ter sets produce phylogenies that converge to a widely more than 20 participating workgroups bringing to- accepted consensus. It is obvious that some traditional gether molecular, morphological and bioinformatic ex- views cannot be maintained and that a new framework pertise with the goal to establish a robust (hopefully) of animal phylogeny is emerging. Nevertheless, the backbone tree of metazoans. Details on the priority large number of contradicting trees indicates that some project “Deep Metazoan Phylogeny” can be found at: fundamental problems of phylogenetic studies have not http://www.deep-phylogeny.org/ . For more informa- been discovered or resolved. tion and to register please visit our website: The international conference *“Celebrating Darwin: *www.dmp2009.org* Please block this period or time From /The Origin of Species/ to Deep Metazoan Phy- in your appointment calendar. logeny” *brings together mathematicians, theorists, – Zoologisches Forschungsmuseum Koenig Leibniz- molecular systematists, and morphologists interested in Institut f¨ur die Biodiversit¨atder Tiere a critical review of known pitfalls and in the presenta- Susanne D¨ungelhoef Sektion Coleoptera Adenauerallee tion of new analytical tools, new types of characters, 160 53113 Bonn and a synopsis of molecular and morphological charac- ters. It is intended to get a critical and constructive (0049) (0)228 9122342 s.duengelhoef.zfmk@uni- view of the state of the art. bonn.de November 1, 2008 EvolDir 3 www.zfmk.de Susanne Duengelhoef Ecology - Ecology in Genes
**Leonie C. Moyle, Indiana University, Salad Specia- The e-Biosphere 09 Conference will be held in London tion: Genetics of adaptation and reproductive isolation on 1-3 June 2009. The conference has three principal in Solanum goals: **Patrick Phillips, Center for Ecology and Evolution- * To highlight the achievements and capabilities of Bio- ary Biology, University of Oregon, Perception and en- diversity Informatics; * To provide practitioners and vironmental context: The ecological genomics of the users of Biodiversity Informatics with opportunities to response to temperature, chemicals, and food within interact and share information; and * To gather input the nematode C. elegans and its relatives from practitioners and users that will help guide the **Ralf J. Sommer, Max Planck Institute for Develop- development of Biodiversity Informatics over the com- mental Biology, Tuebingen, Germany, Tritrophic inter- ing 5-10 years. Representatives of major Biodiversity actions of Pristionchus nematodes with beetles and bac- Informatics initiatives will meet for two days following the Conference to use this input to develop an R&D teria roadmap. **Stephen M. Welch, Kansas State University, Floral gene pathway sensitivity estimation by photothermal The Conference will stress panel discussions, break-out modeling discussion groups, and other meeting formats that will promote active involvement by participants. The Con- **Mark Young, Montana State University-Bozeman, ference agenda will include time for break-out discus- Viral population dynamics in Yellowstone’s hot springs sion meetings of communities of practitioners and users QUESTIONS: of Biodiversity Informatics. The Conference organiz- ers will soon launch web-based discussion groups and If you have questions, please contact us at (785) 532- town-hall meetings through which these communities 3482 or [email protected]. can develop Position Papers that will be finalised at We look forward to seeing you in Kansas City in Novem- the Conference. ber! The e-Biosphere 09 Conference will be an ex- Symposium Organizing Committee: cellent opportunity for developers of biodiversity databases and software to give demonstrations to Michael Herman, Co-Chair, Division of Biology the community. Instructions for exhibitors is avail- Loretta Johnson, Co-Chair, Division of Biology able at http://www.e-biosphere09.org/assets/files/- Ted Morgan, Division of Biology Exhibitors07Jul08.pdf . The Conference website (www.e-biosphere09.org) now has: Tim Todd, Department of Plant Pathology * The Programme of speakers * Call for Abstracts for Kun Yan Zhu, Department of Entomology poster presentation * Applications for Travel Bursaries Lindsey Fallis, Graduate Representative, Biology for participants from developing countries and doctoral students, and * Pre-registration online form * Hotel in- Funding for this symposium is provided by Kansas formation State University. Comments and questions about the Conference can be Ecological Genomics Institute sent to [email protected]. Project Directors: David E. Schindel, Executive Secretary Dr. Loretta Johnson and Dr. Michael Herman Consortium for the Barcode of Life Kansas State University 202/633-0812; fax 202/633-2938; portable 202/557- 104 Ackert Hall, Manhattan, KS 66506-4901 1149 (785) 532-3482, www.ksu.edu/ecogen Email: [email protected] [email protected]
10th & Constitution Avenue, NW Yours sincerely, Washington, DC 20560 Axelle Pontarotti Postal mailing address [email protected] National Museum of Natural History Smithsonian Institution P.O. Box 37012, MRC-105 Washington, DC 20013-7012 Marseilles EvolutionaryBiol “Schindel, David”
Dear All, We are pleased to inform you that the 13th Evolution- London EvoDevo Nov7 ary Biology Meeting at Marseilles will take place on 22-25 September 2009 and that you can already regis- ter at http://sites.univ-provence.fr/evol-cgr For more Evolution and Development - Experimental and Theory information, do not hesitate to go on: http://sites.univ- Friday, Nov 7th 2008, 10.00-17.30 provence.fr/evol-cgr Best wishes, Annual meeting at CoMPLEX, University College Lon- Axelle Pontarotti don Universite EGEE
Lecture 1: Jos? Montoya, Univ. London. Unravelling This message has been arbitrarily truncated at 5000 characters. Darwin’s entangled bank: The architecture of ecologi- To read the entire message look it up at http://life.biology.- cal fragility mcmaster.ca/˜brian/evoldir.html 8 EvolDir November 1, 2008
Natural History Museum, London, UK The annual Young Systematists Forum represents an exciting setting for postgraduate students and young Netherlands PhDStudents Aug14-19 postdoctoral researchers to present their data, often for the first time, to a scientific audience interested in tax- onomy, systematics and phylogenetic inference. This well-established event provides an important opportu- 15th ANNUAL EUROPEAN MEETING OF PhD nity for budding systematists to discuss their research STUDENTS IN EVOLUTIONARY BIOLOGY in front of their peers within a supportive environment. (EMPSEB XV) Supervisors and other established systematists are also Friday 14 - Wednesday 19 August 2009, the Nether- encouraged to attend. lands Prizes will be awarded for the most promising oral and The EMPSEB is an annual meeting aimed to bring PhD poster presentation as judged by a small panel on the students from all across Europe together in an informal day. atmosphere. You get the opportunity to present your Registration is FREE via RSVP: please let us know if work and discuss new ideas with your peers in a relaxed you wish to attend as space is limited. Send applica- and social environment. 6-8 senior scientists working on tions by e-mail to Peter Olson ([email protected]), various topics are also invited to give plenary talks and supplying your name, contact address and stating to provide experienced guidance to start your scientific whether or not you wish to give and oral or poster pre- career. sentation. Space will be allocated subject to availability Registration will be limited to 80 PhD students. We and for a balanced programme of animal, plant, algal, aim to provide travel grants for students that can not molecular and other research. Those wishing to present get funding from their own university. their work should send an abstract as soon as possible in order to increase the likelihood of obtaining a space More information will be made available on the fol- in the programme. lowing website during the coming months: http://- www.empseb2009.nl If you want to be informed reg- Abstracts must be submitted by e-mail in English no ularly, send us an e-mail, so we can add you to our later than 21st November 2008. The body text should mailing list: [email protected] not exceed 150 words in length. If the presentation is co-authored, the actual speaker (oral) or presenter Hope to see you in August! (poster) must be clearly indicated in BOLD text. EMPSEB 2009 Organizing Comittee Aniek Ivens, Uni- All registered attendants will receive by e-mail fur- versity of Groningen Ana Duarte, University of Gronin- ther information about the meeting, including ab- gen Bram Kuijper, University of Groningen Elske stracts, one week in advance. This information will Schut, University of Groningen Rudy Jonker, Wagenin- also be displayed on the Systematics Association web- gen University Ralf Kurvers, Wageningen University site (www.systass.org). Saleta Perez Vila, University of Groningen Michael Briga, University of Groningen Dr Peter D Olson Department of Zoology 709 Darwin Centre The Natural History Museum Cromwell Road, EMPSEB 2009
Stellenbosch InvasiveSpecies Aug UCIrvine MEEGID IX Oct30-Nov1 registration 2
PLEASE CIRCULATE The 10th International Conference on the Evolution and Management of Alien Plant Invasions under the Still time to register! theme “Effective intervention through enhanced collab- Deadline for submissions has been postponed until 15th oration” will be held in Stellenbosch, Western Cape, October. Some slots are still available, both for oral South Africa in August 2009. EMAPi10 will be of in- communications and posters. Last minute registrations terest to a broad audience, from ecologists, evolutionary are accepted. biologists, restoration ecologists and managers. The 9th International Meeting “Molecular Epidemiol- Specific focuss areas will include molecular evolution ogy and Evolutionary Genetics of Infectious Diseases” of plant invasions, Invader-induced trophic cascades, (MEEGID IX), to be held at UC Irvine, California, is Novel ecosystems, Human dimensions of plant inva- still open to registration and communications (oral and sions, Mapping & modelling of plant invasions, Meth- posters). ods for risk analysis in biosecurity,Managing invasive plants ~ learning from successes and failures, Plant in- MEEGID IX is co-organized by the University of Cal- vasions in protected areas, Plant invasions in arid ar- ifornia at Irvine (http://www.uci.edu/) and the Insti- eas special problems, special solutions, Nurseries never- tut de Recherche pour le D´eveloppement (IRD; http:/- ending source of invasive species?, Biofuels ~ a major /www.ird.fr/) in France. Principal organizers are Fran- source of problems with invasive plants in the future?, cisco J. Ayala (Dept Ecology and Evolution, UC Irvine) Communication, education & social marketing~beyond and Michel Tibayrenc (IRD). pretty posters to behaviour change. Communications on genetics, genomics, proteomics, South Africa, and specifically the Western Cape region, phylogenetics, population biology, mathematical mod- is home to one of the world’s most diverse floras. Un- eling, and bioinformatics are welcome. They can report fortunately the country also has a long history of prob- on the host, the pathogen, or the vector for vector- lems with alien plant invasions. However, South Africa borne diseases. Papers considering host + pathogen boasts some of the world’s most innovative and success- or pathogen + vector (co-evolution) are particularly ful management programmes to protect its biodiversity encouraged. All pathogens are within the scope of for future generations. MEEGID: viruses, parasitic protozoa, helminths, fun- gal organisms, and prions. All infectious models can be Stellenbosch lies in the heart of South Africa’s explored, including those of veterinary or agronomical winelands with spectacular natural surroundings. It relevance. is a short drive from Cape Town international airport and the mother city. Stellenbosch offers a vibrant scene Confirmed Speakers: characterized by fantastic restaurants, night life, his- Francisco J. Ayala (Dept Ecology and Evolution, UC tory and spectacular scenery. Irvine): (i) Evolution of malaria; (ii) Darwin’s Revolu- For further information go to: http://- tion www.emapi2009.co.za/, or contact Prof Dave Robin Bush (Dept Ecology and Evolution, UC Irvine, Richardson: [email protected] or Retha Venter: reven- California): Influenza Evolution [email protected] Appolinaire Djikeng (J. Craig Venter Institute, Jaco Le Roux, Ph.D DST-NRF Centre of Excellence Rockville, Maryland, USA) Viral genomics for Invasion Biology Faculty of Science * Stellenbosch University Private Bag X1 * Matieland 7602 * South Sunetra Gupta (University of Oxford, UK) The role of Africa Tel: +27 (0)21 808 2086 * Fax: +27 (0)21 808 immune selection on pathogen population structure 2995 http://www.sun.ac.za/cib [email protected] jler- Henry Harpending (University of Salt Lake City): In- [email protected] fectious Diseases and Human Evolution 10 EvolDir November 1, 2008
Austin Hugues (University of South Carolina, The abstract submission deadline is the 30th Septem- Columbia) The Importance of Purifying Selection ber 2008. Later submissions are accepted, but could in Pathogen Evolution possibly be not included in the congress book. Tovi Lehmann (NIAID, NIH). Vector population genet- Registration Fee: 200.00 euros or equivalent in other ics and genomics currencies. Reduced fees upon request for scientists from developing countries who do not have interna- James Musser (Cornell University, New York) Molecu- tional funds. Registration fees are waived for students. lar Genetic Basis of Group A Streptococcus Epidemics Martine Peeters (IRD Montpellier, France). HIV Registration and abstract submission on: http://- molecular evolution www.th.ird.fr/site meegid/meegid registration.html Anne Rimoin (UC Los Angeles) : implementing active / surveillance of human monkeypox in the democratic re- public of Congo This message has been arbitrarily truncated at 5000 characters. To read the entire message look it up at http://life.biology.- Michel Tibayrenc (IRD, Montpellier,France): Inte- mcmaster.ca/˜brian/evoldir.html grated evolutionary epidemiology: where are we now? Nathan Wolfe (UC Los Angeles): Viral forecasting The MEEGID meetings are organized in synergy with the new journal Infection, Genetics and Evolution (El- sevier; http://www.elsevier.com/locate/meegid), cov- ering the same scientific topic. Launched only 6 years UStAndrews ago, Infection, Genetics and Evolution is now published HumanBehaviourEvolution Apr6-8 with six issues per year, and has been indexed by Med- line and Index Medicus, starting from the first issue. It is now covered by ISI and the official impact factor for The fourth EHBE meeting, and first of the newly 2007 is 2.407 (ISI Web of knowledge). formed European Human Behaviour and Evolution As- The papers communicated for MEEGID IX will be pub- sociation, will be held at the University of St Andrews lished in a special issue of Infection, Genetics and Evo- from Monday 6th to Wednesday 8th April 2009. The lution, as already done for MEEGID VI (Paris, July conference will bring together researchers across multi- 2002) and MEEGID VIII (Bangkok, Thailand, Novem- ple disciplines who are studying human behaviour from ber 2006). MEEGID IX will include 10-15 plenary lec- an evolutionary perspective. tures, about 20 specialized symposia, 12-15 “express- EHBEA aims to provide a genuinely interdisci- debates” (a 20-min presentation by a single speaker fol- plinary European research forum representing the main lowed by 40 min of free discussion) and several poster branches of human behavioural ecology, evolutionary sessions. psychology, cultural evolution and related subdisci- Special emphasis through plenary lectures and sym- plines. The conference doubles as a flagship meeting posia will be given to health problems of particular in- for CULTAPTATION, an EU-funded interdisciplinary terest to mediterranean and tropical countries: AIDS, project investigating dynamics and adaptation in hu- malaria, tuberculosis (especially multidrug resistant man cumulative culture. TB), sleeping sickness, leishmanioses, Chagas disease, Plenary Speakers: Monique Borgerhoff Mulder (UC ebola, bird flu, Chikungunya, as well as cattle and crop Davis) Rob Boyd (UCLA) Val Curtis (LSTHM) Marcus pathogens. Plenary lectures and symposia will also deal Feldman (Stanford) Joan Silk (UCLA) with transversal topics such as population genetics or species concepts. The congress is still open to proposals Further Information: http://biology.st- for conferences and symposia. andrews.ac.uk/ehbe2009 EHBEA Steering Committee: Kevin Laland (St Andrews), Rebecca Sear (LSE), Tom Awards will be attributed to the best oral communica- Dickins (UEL), David Lawson (UCL) tion, the best oral communication by a scientist from the Southern World on a problem specifically relevant The conference is organised by Kevin Laland, Gillian to these areas, the best oral communication by a stu- Brown, Luke Rendell and Lewis Dean dent, and the best communication by poster. Each – Dr. Luke Rendell Post-Doctoral Research Fel- prize winner will be offered a free 2-year membership low Tel: (44)(0)1334 463499 E-mail: ler4@st- to Infection, Genetics and Evolution. andrews.ac.uk WWW: http://bio.st-andrews.ac.uk/- November 1, 2008 EvolDir 11 staff/ler4.htm School of Biology, University of St. An- Euro prize: http://www.intercult.su.se/cultaptation/- drews Bute Medical Building, Queen’s Terrace St. An- tournament.php The University of St Andrews is a drews, Fife KY16 9TS U.K. charity registered in Scotland : No SC013532 Social Learning Strategies Tournament - 10,000 Luke Rendell
GradStudentPositions
AmericanMNH EvolutionaryBiology ...... 11 ULouisianaLafayette CaveCricketGenetics ...... 22 Birmensdorf Switzerland NicheEvolution ...... 11 UMaryland EvolutionaryBiol ...... 22 BlackHillsStateU Genomics ...... 12 UMontana EvolutionaryGenetics ...... 23 DartmouthCollege EvolutionaryBiol ...... 13 UMunich MarinePhylogeography ...... 23 FloridaStateU PhylogeneticsPhylogeography ...... 13 UNewBrunswick Population Genetics ...... 24 FloridaStateU SpeciationHerpetology ...... 14 UniversityofGuelph EvolutionaryEcol ...... 25 GhentU EvolutionaryRobots ...... 14 UNorthCarolinaChapelHill EvolutionaryBiol ...... 25 Leipzig HumanOrigins ...... 14 UNorthTexas ConservationGenetics ...... 26 MaxPlanckInst Evolution ...... 15 UNotreDame EvolutionaryBiology ...... 26 MichiganStateU LakeSturgeon ...... 16 UOtago EvoDevo ...... 27 TexasAMU ParasiteEvolution ...... 98 UOtago EvolutionaryBiol ...... 28 TexasStateU MollyEvolution ...... 17 USalzburg EvolutionaryBiol ...... 28 UEastAnglia TurtleConservationGenetics ...... 17 USouthernCalifornia Speciation ...... 29 UFlorida InsectEvolution ...... 18 UZurich PlantHybridization 2 ...... 29 UGottingen ChemoautotrophicEvolution ...... 19 VanderbiltU EvolutionaryBiol ...... 30 UHelsinki EvolutionaryGenetics ...... 19 vTI Germany PopulationGenetics ...... 30 UHelsinki MarinePhylogeography ...... 104 UKansas EvolutionaryBiol ...... 21
200 active scientists, 40 curators/professors, 32 million specimens and a 400,000 volume natural history library. AmericanMNH EvolutionaryBiology Application deadline is December 15, 2008. Visit http://rggs.amnh.org for more information. [email protected] Ph.D. in Comparative Biology Richard Gilder Gradu- ate School Our unique, 4-year accelerated Ph.D. program focuses on the history and interactions among species, within and between biotas, and across time and space. We Birmensdorf Switzerland offer: NicheEvolution Multi-faceted curriculum featuring field work, teaching assistantships and collections-based research. 2:1 faculty to student ratio and comprehensive financial Ph.D. Position Open support. Project: Evolutionary Niche dyNamics of Invasive 12 EvolDir November 1, 2008
Species (ENNIS) your questions to: Project Description: The ENNIS project seeks to un- Peter B. Pearman [email protected] Or Nicolas Salamin derstand the relationship between the evolutionary his- [email protected] tory of a clade, the niche variation and accompanying – variation in the distribution of species, and the ten- dency for plant species to become invasive and/or nat- Peter B. Pearman Land Use Dynamics Federal Re- uralized. The project will focus on clades that have search Institute WSL Z¨urcherstrasse 111 8903 Birmens- naturalized and invasive species in Switzerland and dorf Switzerland central Europe. We will use an interdisciplinary ap- [email protected] [email protected] proach that includes activities in niche modeling, se- quencing DNA regions, phylogenetic reconstruction and modeling trait evolution. The research includes char- acterization of the environmental niches and distribu- tion of clade members using multivariate statistics and niche-based species distribution modeling; bioinformat- BlackHillsStateU Genomics ics approaches to the use of sequence and phylogenetic databases, and use of other databases on the distribu- tion of invasive species. A substantial portion of the Black Hills State University ’ Masters of Science in In- research will involve production of DNA sequence data tegrative Genomics to complete phylogenetic trees of species in clades that Several Masters Graduate Assistant (GA) positions contain invasive and naturalized species in central Eu- are available for Spring 2009 (January) or September rope. Collection of material for sequencing, and addi- (2009) in Integrative Genomics (IG) Masters program tional data on species global distributions, will involve at Black Hills State University, Spearfish, SD. The visiting national herbaria, botanical gardens, individual GA positions are available to students interested researchers, and doing fieldwork throughout the sum in working with any member of the IG faculty distribution of the species in the focal clades. Phylo- (http://www.bhsu.edu/Academics/TheColleges/- genetic reconstruction of evolutionary relationships will CollegeofArtsandSciences/Departme ntsandPro- be undertaken using likelihood and Bayesian methods. grams/Masters/Faculty/tabid/4950/Default.aspx). Modeling of evolutionary processes of ecological diver- sification will be approached through the use of exper- Integrative Genomics is an interdisciplinary graduate imental software and the development of original algo- program that combines genomics, ecology, evolution, rithms. and physiology to better understand the evolutionary forces that have shaped the mechanisms that are im- The Ph.D. Student Position portant to species interactions in the wild. The pro- Description The position includes funding for salary, gram is designed to provide those seeking a Masters travel and all research expenses for three years. You degree the necessary skills and concepts to work co- will be matriculated in the Ecology and Evolution doc- operatively with others in a research area that takes a 1 toral program of the University of Lausanne (UNIL), systems-wide approach and incorporates an organism s Switzerland, and will be a member of both the Depart- history and natural environment to understand organi- ment of Ecology and Evolution (DEE) at that institu- zation and expression at the genomic level. Exposure tion and at the Federal Research Institute WSL, located to modern techniques and instrumentation in the lab- in Birmensdorf near Z¨urich. You will spend substan- oratory and field prepares students for success in both tial periods in residence at both institutions during the academic and other biotechnology-related pursuits. three-year period under the supervision of Drs. Peter Integrative Genomics GAs receive an annual stipend B. Pearman (WSL) and Nicolas Salamin (UNIL). of $16,640 and additional funds for laboratory supplies Application deadline: 15 February 2009 and expenses. Starting date: You would hopefully be ready to begin For an overview of the IG program and ap- by June 1st, 2009 plication information please visit our website http://www.bhsu.edu/Academics/TheColleges/- For requirements and how to Apply: See websites CollegeofArtsandSciences/Departmen tsandPro- http://www2.unil.ch/phylo http://www.wsl.ch/- grams/Masters/tabid/2164/Default.aspx or contact personal homepages/pearman After reviewing the Garth M. Spellman, Ph.D. Assistant Professor information available at the web sites, please direct CCBR/Westcore Black Hills State University 1200 November 1, 2008 EvolDir 13
University Street, Unit 9053 Spearfish, SD 57799- terviews February 6-8. 9053 ph: 605-642-6854 [email protected] Dartmouth is an equal opportunity/affirmative action
The Leipzig School of Human Origins, an Interna- GhentU EvolutionaryRobots tional Max Planck Research School by the University of Leipzig and the Max Planck Institute for Evolutionary Anthropology, offers a unique interdisciplinary gradu- The Research Group Bioinformatics and Evolutionary ate program to study the evolutionary history of hu- Genomics of the Department of Plant Systems Biology mans and great apes. at VIB/Ghent University is currently looking for a Graduate students are accepted into one of the follow- PhD student ing areas, but are encouraged to take part in courses November 1, 2008 EvolDir 15 and seminars from all three disciplines: Sandra Jacob
The appointment will be on a temporary basis for a sq. ft. stream-side research facility on the river, and maximum of 4 years. The gross salary starts at ap- (c) genetic analyses to determine parentage to esti- proximately 1400,- per month depending on age and mate inter-individual variation in reproductive success. experience (TV¨oD13/2, Stufe 1). The successful candidate will work with a strong inter- Information: Additional information about disciplinary team of researchers from MSU and the this appointment is available upon request Michigan Department of Natural Resources (MDNR) from Jesko Partecke ([email protected] with backgrounds in evolutionary ecology, biometry, and fisheries ecology management.
Graduate Position: Ecological and genetic components affecting lake sturgeon recruitment A PhD graduate position is available beginning in Jan- TexasAMU ParasiteEvolution uary 2009 or as soon as possible thereafter in the De- partment of Fisheries and Wildlife of Department of Zoology at Michigan State University (MSU). Fund- Accepting Graduate Students ing is available for 5 years to investigate ecological and The lab of Charles Criscione at Texas A&M Univer- genetic factors associated with inter-annual variation sity, Dept. of Biology is now accepting Ph.D. stu- in recruitment in long-lived iteroparous lake sturgeon. dents interested in studying the ecology and evolution The successful candidate will have access to an exten- of parasites (e.g., mating systems, population genet- sive 8 year data base on adult breeding ecology, repro- ics, phylogeography) in human, veterinary, and natu- ductive success and larval recruitment of lake sturgeon ral (plant or animal) systems. The Department of Bi- in the Black River watershed in Michigan. ology faculty (http://www.bio.tamu.edu/FACMENU/- We seek a highly motivated individual with experi- facalph.htm) has diverse expertise ranging from molec- ence and desire to work in both field and labora- ular/developmental genetics to evolutionary and behav- tory settings. Work will involve (a) in-stream work ioral theory. The Criscione lab is also part of the Inter- with spawning adults and at the egg and larval stages, disciplinary Research Program in Ecology and Evolu- (b) common-garden experiments to investigate environ- tionary Biology at A&M (http://eeb.tamu.edu/about/- mental and genetic components of variation embryonic ). A Masters or strong undergraduate research back- and larval development in a newly constructed 3300 ground is desirable. Texas A&M University is an equal November 1, 2008 EvolDir 17 opportunity, affirmative action employer committed to ics), and Chris Nice (Speciation in insects and phylo- diversity. geography). We have both General Biology and Popu- lation and Conservation Biology MS programs available Interested individuals should visit the web sites below and contact Dr. Criscione di- and a Doctoral program in Aquatic Resources. rectly ([email protected]). http:/- For more information on admissions see http://- /www.bio.tamu.edu/FACMENU/FACULTY/- www.bio.txstate.edu/grad/GradGuide.html. Please CriscioneC.htm http://www.geocities.com/- also see the Department of Biology (http://- cooch2000/ Information on applying and guidelines www.bio.txstate.edu/) and Texas State University for acceptance to the Dept. of Biology can be found (http://www.txstate.edu/) web sites for more informa- at http://www.bio.tamu.edu/GRADINFO/Index.html tion. Currently there is a soft deadline for applications Charles D. Criscione, Assistant Professor Department to the MS program. of Biology Texas A&M University 3258 TAMU College To apply please send a statement of interest and Station, TX 77843-3258 a CV/resume of related research, coursework, GPA, phone: (office: 979-845-0917, lab:979-845-0925) GRE, and any other relevant experience to Caitlin Ga- email: ([email protected]) faculty bor by email (gabor at txstate.edu). Reference letters web page: www.bio.tamu.edu/FACMENU/- for top candidates will be solicited at a later date. Ap- FACULTY/CriscioneC.htm pdf reprints web page: plications will be reviewed as they come in. www.geocities.com/cooch2000 Charles Criscione Caitlin R. Gabor, Ph. D. Associate Professor Texas
BEHAVIORAL ECOLOGY OF SAILFIN AND AMA- ZON MOLLIES Teaching Assistantship for MS or Ph. D. UEastAnglia TurtleConservationGenetics Applications are being sought for one student interested in pursuing an academic career studying various aspects of the behavior of sailfin and Amazon mollies starting no later than January 2009. Amazon mollies, Poecilia Evolutionary and conservation genetics of the Hawks- formosa, are a clonal, all female species that are essen- bill turtle tially sexual parasites as they require sperm from the Start Date October 2009 closely related sailfin molly, P. latipinna to start the de- velopment of their eggs but do not use it to fertilize their Funding open to UK and EU candidates eggs. Conflict exists between male sailfin mollies that Genetic studies have determined many aspects of the prefer to mate with conspecifics and Amazon mollies biology of marine turtles, e.g. population structure, that require matings with these males. We are look- migration and natal philopatry, however little work has ing for a student to work on some aspects of this sys- been done on their mating systems. Although it is easy tem and can supply Teaching Assistantships for the fall to observe females nesting it is normally impossible to and spring terms. See http://www.bio.txstate.edu/- know the identity of the males that have fertilised the ˜ gabor/gabor.htm for details about our lab and our eggs as mating happens at sea, often a long way away research interests. from the nesting grounds. Such details are of evolu- The Department of Biology offers a strong environment tionary interest but also crucial in directing the con- in evolutionary ecology as the basis for training in be- servation of this highly vulnerable group. For example, havioral ecology. Students will benefit from interactions knowing paternity means that the effective population with other faculty interested in evolutionary questions size can be estimated. Determining mating preferences such as: Jim Ott (Insect-plant interactions and ecolog- can also be important - if females prefer bigger males ical genetics), Noland Martin (Plant population genet- then the loss of such males through poaching may be 18 EvolDir November 1, 2008 highly detrimental. Alternatively, if females prefer ge- University of East Anglia, Norwich NR4 7TJ England netically dissimilar males to reduce inbreeding, popu- http://biobis.bio.uea.ac.uk/biosql/fac show.aspx?ID= lation fragmentation may have a greater impact than 325 email [email protected] previously thought. The PhD will assess patterns of pa-
University of Helsinki, invites applications for cation list (if available) - A scanned academic transcript (list of grades in university courses) - A statement of Doctoral Student Position research interests and motivation for applying this po- The Doctoral Student will be a part of the Evolution- sition not exceeding two pages - Two references. ary Genetics Research Unit (EGRU) in their project ˆaLongterm phenotypic trends of migratory whitefish Applications should be addressed to the Faculty of Bio- sciences and sent to Department of Biological and En- (Coregonus lavaretus): evolutionary and genetic per- vironmental Sciences, Johanna Paananen, P. O. Box spectivesˆa. The assignment will begin on the early 2009 (start date is flexible) and end in the end of 56 (Viikinkaari 9), FIN-00014 University of Helsinki, 2011. EGRU is part of the Finnish Centre of Excel- to arrive no later than 1st December 2008, by 3:45 lence in Evolutionary Genetics and Physiology (http:/- p.m. (local Helsinki time). More information on /www.coe.fi). Supervisors of the project are Dr. Anna the Doctoral Student Position from the supervisor Dr. Anna Kuparinen (tel. +358 9 191 57708, email. Kuparinen and Prof. Juha Meril¨a.The research work is done in collaboration with Finnish Game and Fisheries anna.kuparinen@helsinki.fi). Research Institute (http://www.rktl.fi). More information about Finland, University of The aim of this PhD project is to investigate the trends Helsinki, and Department of Biological and Envi- ronmental Sciences can be found from the follow- in growth, age and size at maturation as well as ge- http://www.helsinki.fi/en/index.html (city) netic structuring of the whitefish populations spawning ing links: in two Finnish rivers. The specific aims are to inves- http://www.helsinki.fi/university/ (university) http:/- tigate temporal phenotypic trends, to assess how these /www.helsinki.fi/bio/english/ (department) Further in- coincide with possible changes in the genetic structure formation about University of Helsinki International Staff Services: http://www.helsinki.fi/intstaff/ Jo- of the populations, and to gain insights into possible hanna Paananen
UniversityofGuelph UNorthCarolinaChapelHill EvolutionaryEcol EvolutionaryBiol
M.Sc. Opportunities in Plant Ecology, Evolutionary University of North Carolina at Chapel Hill graduate Ecology, and the Impact of Invasive Species on Ecosys- program in Ecology, Evolution, and Organismal Biol- tems. ogy (EEOB) The Maherali Lab (Department of Integrative Biology, Dear Colleagues: University of Guelph) is seeking M.Sc. candidates to Our group at UNC has recently hired a number of new begin graduate studies in Fall 2009. We study the faculty including a number of evolutionary biologists, evolutionary forces that shape the function of organ- and our graduate program is expanding as a result. I isms and the link between plant function and ecologi- am writing to ask you to pass along the information be- cal processes at the population, community and ecosys- low to any outstanding prospective graduate students tem levels. Our work is focused on understanding the you know who are interested in pursuing a Ph.D. in the causes of adaptive evolution in order to predict how fields of Evolution, Ecology, or Organismal Biology. organisms and ecosystems will change in the future, es- pecially in response to climate change and the global — transport of biota. Specific projects include the physi- The Ecology, Evolution, and Organismal Biology ological ecology of drought adaptation, the ecology and (EEOB) group in the Department of Biology at the Uni- evolution of plant fungal interactions, the ecological versity of North Carolina, Chapel Hill is currently un- and evolutionary impacts of invasive species on native dergoing a major expansion of its Ph.D. program. We ecosystems. To learn more about research projects, encourage applications from exceptional students who visit our labs web site at: http://www.uoguelph.ca/- wish to pursue graduate studies in any field of EEOB. ˜ maherali/ . To apply, contact Dr. Hafiz Maherali ([email protected]). In your email, provide infor- Over the past 6 years, we have added 13 new members mation on your background (transcripts, past research to our EEOB faculty. We are a large and diverse group with internationally recognized research programs in experience, contact information for up to 3 references) topics ranging from neurobiology and molecular evo- and a brief outline of your research interests and why you want to pursue that research in my lab group. I lution to evolutionary and community ecology. Many am happy to consider applications from students with of the labs in our group are expanding, so UNC Biology their own research proposals, as long as the work fits is currently an exciting place to be for graduate studies within the broad themes of research in my lab. in EEOB. Please note that you must be a Canadian citizen to Graduate students who come to UNC can expect to be considered for these positions. To be competitive work in a dynamic environment with outstanding col- for admission, you should also have a B+ average or leagues. Many current EEOB students have been higher in your last 2 years of undergraduate study. Un- trained at top-tier institutions and have received na- tionally competitive fellowships and grants to fund their dergraduate research experience, though not required, will be viewed as an asset. research. Students who are interested in our pro- gram should visit: http://www.bio.unc.edu/graduate/- – Hafiz Maherali Assistant Professor Department of In- EEOB/ — tegrative Biology University of Guelph Best wishes, Phone:519-824-4120 ext. 52767 Email: maher- [email protected] Lab Web Page: www.uoguelph.ca/- Christopher S. Willett Department of Biology UNC ˜ maherali [email protected] maher- Chapel Hill Chapel Hill, NC 27516 [email protected] [email protected] 26 EvolDir November 1, 2008
transcripts and GRE scores and contact information for three references to: Jeff A. Johnson Department of Biological Sciences In- stitute of Applied Sciences University of North Texas UNorthTexas ConservationGenetics 1155 Union Circle #310559 Denton, TX 76203 Tel: 940-369-8071 Email: [email protected] GRADUATE POSITIONS (M.S. or Ph.D.) in Conser- Deadline: Nov 15 (for January 20th start date) or July vation/Population Genetics in the lab of Dr. Jeff John- 15 (Aug 27 start date). Review of applicants will begin son, Department of Biological Sciences and the Insti- immediately and will continue until suitable candidates tute of Applied Sciences, University of North Texas are identified. (UNT), starting January or August 2009. I am seek- “Johnson, Jeff”
Applicants must prepare a statement of interest that One of the government-funded Centres of Re- indicates their desire to be considered for a GLOBES search excellence, the NRCGD < http://- fellowship and explains how their background and re- www.growthcentre.ac.nz/uoa/nrcgd/ > brings search interests align with the central themes of the together five groups of world class scientists GLOBES program. with very different skill sets and resources work- Application deadlines for Fall 2009 admission vary de- ing in Auckland, Hamilton, Palmerston North, Christchurch and Dunedin in the Universities pending on the home department of study (Jan. 5 is the of Auckland< http://www.auckland.ac.nz/ >, deadline for Biological Sciences). Explore the research interests of participating faculty from the various de- Massey< http://www.massey.ac.nz/ > and Otago< partments involved in GLOBES and learn more infor- http://www.otago.ac.nz/ > and in association mation by visiting the website at http://globes.nd.edu with AgResearch< http://www.agresearch.co.nz/ < http://globes.nd.edu/ > >. The Centre is headquartered in the Liggins Institute of the University of Auckland< http://- Jeffrey L. Feder GLOBES Program Director E-mail: www.liggins.auckland.ac.nz/ >, already internationally [email protected] known for many contributions in the area of growth David Lodge GLOBES Interim Director 2008-09 and development. The Department of Zoology< Email: [email protected] Department of Biological http://www.otago.ac.nz/zoology/index.html > at the Sciences University of Notre Dame, IN 46556- University of Otago< http://www.otago.ac.nz/ > 0369 Phone: (574) 631-4159 http://globes.nd.edu < is one of the top-rated research departments in the http://globes.nd.edu/ > country, with many faculty having international repu- tations in their areas of expertise and making major Ginna Anderson GLOBES Program University of Notre contributions to answering fundamental questions in Dame Department of Biological Sciences Rm 180 basic and applied research. Galvin PH: 574-631-3287 EMail: [email protected] Mail to: P.O. Box 369 Notre Dame, Indiana 46556 Web: The scholarship pays a tax-free emolument of http://globes.nd.edu < http://globes.nd.edu/ > NZ$25,000 + fees for three years. Applicants should have an MSc or BSc(Hons) degree or equivalent in bi- Ginna Anderson
Hamish Spencer
Ph.D. POSITION IN PLANT HYBRIDIZATION (Second announcement: revised deadline) DESCRIPTION: A Ph.D. position is available to join an on-going study on hybridization between distylous 30 EvolDir November 1, 2008
Dan Funk ([email protected]) – speciation, ecological specialization, phylogeny, evolutionary ge- netics, herbivorous insect biology Dave McCauley ([email protected]) – VanderbiltU EvolutionaryBiol population biology, population structure, local adap- tation in plants and insects Antonis Rokas ([email protected]) – phy- logenetics, molecular evolution, comparative genomics, GRADUATE STUDIES IN ECOLOGY AND EVOLU- origins of multicellularity, evolution of genetic pathways TION AT VANDERBILT UNIVERSITY in fungi Dear colleagues and prospective students, For further information on research and graduate study The Department of Biological Sciences at Vanderbilt at Vanderbilt, please consult our departmental web University seeks interested and highly motivated grad- page at http://sitemason.vanderbilt.edu/biosci .Spe- uate students to join a group of laboratories with com- cific questions can be directed to any of the above fac- plementary research interests focusing on ecological and ulty. genetic mechanisms of evolutionary diversification. On- [email protected] going research investigates all stages of diversification [email protected] (population differentiation, speciation, evolutionary ra- diation) and various fundamental processes (adapta- tion, ecological specialization, symbiosis, social inter- actions, origins of multicellularity, genome evolution) in animal, plant, and microbial systems. Please visit http://www.vanderbilt.edu/evolution to vTI Germany PopulationGenetics find out more about our research group. Online applica- tion to the graduate program is FREE and can be filed electronically at http://sitemason.vanderbilt.edu/- PhD Student Position - Population Genetics biosci/grad/application. The deadline for submission of applications is JANUARY 15TH. A PhD student position in Population Genetics / Evo- lutionary Ecology is available at the Institute of Fish- Our E&E group shares one floor of a modern building, eries Ecology at the Johann Heinrich von Th¨unen- complete with our own DNA sequencing/genotyping Institute (vTI), the Federal Institute of Rural Areas, facility, numerous environmentally controlled rooms, Forestry and Fisheries in Hamburg, Germany in the and an adjoining state-of-the-art greenhouse. Vander- laboratory of Reinhold Hanel. The student will join bilt researchers enjoy the participation of excellent un- a collaborative research group studying genetic diver- dergraduates, the resources of a thriving medical cen- sity, speciation and the evolution of key-innovations in ter and full access to a supercomputing facility. Our Antarctic notothenioids. beautiful campus is located in the heart of Nashville, a friendly and inexpensive city situated amidst the The project includes population genetic and molecu- lush rolling hills of biologically diverse middle Ten- lar phylogenetic analyses on species of Antarctic fish, nessee. Graduate students receive generous stipends primarily across the Scotia Ridge by investigating mito- (~$27,000/year) and are trained in a highly interactive chondrial control region sequences, microsatellite mark- scientific community. ers, and sequences of the nuclear hemoglobine and an- tifreeze glycoprotein genes. The candidate should be The research interests of our Ecology & Evolution fac- willing to join at least one Antarctic survey as well as ulty are listed below. Please note that all faculty are research visits to partner institutions. actively recruiting new graduate students: The PhD student will receive a salary according to the Patrick Abbot ([email protected]) – social German pay scale (E13/2 TV-L). Applicants should evolution, symbioses, molecular evolutionary genetics have a master’s degree or equivalent in evolutionary in insects and microbes biology or a related field. In addition, laboratory expe- Seth Bordenstein ([email protected]) – rience in molecular biology and/or genetics is desired. evolutionary genomics of animal-microbe interactions, Interested candidates should send a CV, statement of microbial ecology of bacteriophage and intracellular interest, and contact information of two potential ref- bacteria, infectious speciation, Wolbachia erees to: November 1, 2008 EvolDir 31
Prof. Dr. Reinhold Hanel Director of Institute Johann Applications will be reviewed beginning November 14, Heinrich von Th¨unen-Institut (vTI) Federal Research 2008. The position is expected to start on February 1, Institute for Rural Areas, Forestry and Fisheries 2009. Institute of Fisheries Ecology The vTI is an Equal Opportunity/Affirmative Action Palmaille 9 22767 Hamburg Tel.: 040-38905-290 Fax: Employer and has an affirmative action policy for the disabled. 040-38905-261 Email: [email protected] Reinhold Hanel
Jobs
AdelphiU EvolutionaryEcol ...... 31 SanFranciscoStateU Bioinformatics ...... 49 AppalachianStateU EvolutionaryAnthropology . . . . 32 UAarhus Bioinformatics ...... 50 BostonU MarineEvolutionaryBiol ...... 32 UAlberta LabTech VertebrateBiol ...... 50 CaliforniaAcademySci ComparativeGenomics ...... 33 UCaliforniaSantaBarbara EvolutionaryGenomics . . 51 CaseWesternReserveU AmphibianEvolution ...... 34 UCincinnati EvoDevo ...... 51 CornellU CellularSystemsBiology ...... 34 UFlorida InsectVectorGenomics ...... 52 CornellU ComputationalBiologyBioinformatics . . . . 35 UMassachusetts Boston MolecularEvol ...... 52 CornellU GenomicsofGeneExpression ...... 36 UMemphis BioinformaticsPhylogeneticist ...... 52 CornellU PopulationComparativeGenomics ...... 37 UMichiganDearborn EvolutionaryBiol ...... 53 EastCarolinaU EvoDevo ...... 38 UMinnesota EvolutionEcolBehav ...... 53 Finland GenomicModeling ...... 39 UMinnesota PlantComputationalBiol ...... 54 FloridaInternationalU PopulationGenetics ...... 40 UMontana PopulationGenetics ...... 55 GettysburgCollege PopulationBiol ...... 40 UNeuchatel Tech PlantEvolutionaryEcol ...... 55 HarvardU HumanEvolution ...... 41 UNotreDame 2 Genomics ...... 56 HarvardU OneYear HrdyFellowship ...... 41 UNotreDame Genomics ...... 57 HarvardU SystemsBiology ...... 42 UNotreDame GenomicsFacilityManager ...... 57 InstZoology London ResTech SalmonGenetics . . . . . 43 UNSW Sydney EvolutionLecturer ...... 58 IowaStateU SystemsBiology ...... 44 UOklahoma EvoDevo ...... 58 NatalMuseum SouthAfrica Curator ...... 44 USouthFlorida PlantEvolutionaryBiol ...... 59 NewMexicoStateU EvolutionaryEcol ...... 45 UTennessee 6 MathematicalEvolution ...... 59 NewYorkU GenomicsSystemsBiol ...... 45 UTrier EvolutionaryBiology ...... 60 NorthCarolinaStateU EvolutionaryBiology ...... 46 UTubingen ComparativeZoology ...... 61 OhioU EvolutionaryBiology ...... 47 UWisconsinMilwaukee BioinformaticsGenomics . . . .62 OklahomaStateU PlantEvolution ...... 47 VanderbiltU ResearchTechnician Genomics ...... 63 Portugal Borneo Technician ConservationGenetics . 47 VirginiaCommonwealthU PlantMolecularSystematics QueensCollege CUNY EvoDevo ...... 48 63 ReedCollege Portland CichlidEvolution ...... 96
Title: Tenure-track Assistant Professor Position (Evo- lutionary Ecology) AdelphiU EvolutionaryEcol Text: Evolutionary ecologists are especially welcome to apply 32 EvolDir November 1, 2008 for the following job. focus. The successful applicant will teach in the univer- sity’s new general education program and also develop As seen in the 10 October issue of Science: ADELPHI courses in his/her own specialty in the department’s UNIVERSITY www.adelphi.edu ASSISTANT PRO- FESSOR TENURE-TRACK BIOLOGY new Biological Anthropology concentration (http://- www.appalachianbioanth.org). Adelphi University invites applications for a tenure- Applicants must provide (1) a letter of application, track position in Biology to begin August, 2009. Teach- ing responsibilities will include participation in intro- which includes research and teaching statements; (2) ductory biology and advanced courses in the candi- a CV with names, addresses, and phone numbers of date’s specialty. We are especially interested in can- three references; (3) teaching evaluations; and (4) a re- didates who work on the organismal level with ma- cent writing sample. Applications should be sent to Dr. Gregory Reck, Chair, Department of Anthropol- rine/coastal systems (preferably invertebrates, algae, ogy, Boone, North Carolina, 28608 or electronically to and/or plants) and whose research involves a signifi- cant amount of field work. A Ph.D is required; post- [email protected]. Review of applications will begin doctoral experience preferred. The successful applicant immediately and continue until the position is filled. will have excellent potential as a teacher, significant re- Appalachian State University is one of the 16 mem- search accomplishments, and the potential to develop bers of the University of North Carolina system, lo- a fundable independent research program involving un- cated near the Blue Ridge Parkway, 200 miles from dergraduates and master’s students. We are committed Chapel Hill. The Department of Anthropology has to diversity and encourage applications from members approximately 150 majors and campus enrollment is of underrepresented groups. 16,000. ASU is nationally recognized and ranked 7th in the Southeast for Masters level universities. Our web- Deadline for Applications: November 10, 2008 site is http://www.appstate.edu. ASU is an equal op- Adelphi is a private university with the spirit of a liberal portunity/affirmative action employer. Minorities and arts college, located in suburban Long Island within women are encouraged to apply. easy reach of New York City. Our faculty carry out the Gwen Robbins, Ph.D. Assistant Professor Department challenging and fulfilling combination of teaching and of Anthropology 401 Sanford Hall Appalachian State research. University Office: (828) 262-7505 Fax: (828) 262-2982 For more information about the department, visit http://www.appstate.edu/˜Robbinsgm Gwen Robbins www.academics.adelphi.edu/artsci/bio/ Apply on-
The Biology Department at Boston University (www.bu.edu/biology) invites applications for a tenure- AppalachianStateU track appointment at the Assistant Professor level. We EvolutionaryAnthropology seek an evolutionary ecologist conducting research in nearshore marine systems at the population, commu- nity, and/or ecosystem levels. The successful candi- date will also participate in the interdisciplinary Boston Please post this notice and distribute widely. University Marine Program (www.bu.edu/bump). Re- The Department of Anthropology at Appalachian State sponsibilities will include establishing an independent University invites applications for a one year, full time, research program with extramural funding and active renewable, non-tenure track appointment in Biological participation in undergraduate and graduate teaching. Anthropology. The position will begin in August 2009 Please submit a cover letter, curriculum vitae, and and carries full benefits. PhD in anthropology pre- statement of research and teaching interests in a sin- ferred, but ABD will be considered. Specialization is gle electronic document. E- mail this document and open, but preference will be given to candidates whose three representative reprints to Dr. Michael Sorenson, research has a strong evolutionary and/or biocultural Chair, Marine Ecology Search Committee, Department November 1, 2008 EvolDir 33 of Biology, Boston University at [email protected]. Also, and nature as otherwise assigned - Follow all Academy please arrange for three letters of reference to be sent safety regulations - Maintain frozen genomics collection to the same email address. Review of applications will and database - Other duties assigned begin December 5, 2008. QUALIFICATIONS: To perform this job successfully, Boston University is an equal opportunity/affirmative an individual must be able to perform each essential action employer. duty satisfactorily. The requirements listed below are representative of the knowledge, skill, and/or ability re- Michael Sorenson Associate Professor Department of Biology Boston University 5 Cummington St. Boston, quired. Reasonable accommodations may be made to MA 02215 enable individuals with disabilities to perform the es- sential functions. (617) 353-6983 FAX: (617) 353-6340 EDUCATION and/or EXPERIENCE: - Minimum of a [email protected] [email protected] Bachelor’s degree in Biology or related field of study. Prefer Masters degree or higher or extended lab man- agement experience. - General experience with PCR and DNA sequencing. - Experience with automated sequencers, preferably with an ABI 3130xl genetic ana- CaliforniaAcademySci lyzer. - Experience with shotgun sequencing and clone ComparativeGenomics library management desired. KNOWLEDGE, SKILLS AND ABILITIES: - Excellent organizational skills - Excellent verbal and written com- POSITION ANNOUNCEMENT: Center for Compar- munication skills - Ability to work as a member of a ative Genomics Laboratory & Collections Coordinator team - Cross platform computer skills (Windows, Ma- at California Academy of Sciences cOS, UNIX) - Experience with molecular applications (Sequencher, PAUP, MrBayes, Clustal, etc) - Excellent POSITION SUMMARY: Under the supervision of the database and spreadsheet experience - Hands on expe- Head of the Center for Comparative Genomics, the Lab- rience with modern molecular techniques. oratory & Collections Coordinator will manage the op- eration and general maintenance of the Center for Com- LANGUAGE SKILLS: Ability to read and interpret parative Genomics, its activities and related equipment. documents such as safety rules, operating and main- The position also requires the management of the ge- tenance instructions, and procedure manuals. Ability nomics cryocollection. He/she will supervise users of to write routine reports and correspondence. Ability to the core molecular systematics laboratory. The labora- speak effectively before groups or individuals. tories are used by undergraduate, advanced degree stu- PHYSICAL DEMANDS & WORK ENVIRONMENT: dents and established researchers conducting research The physical demands and work environment described various scientific disciplines. here are representative of those that must be met by an ESSENTIAL DUTIES AND RESPONSIBILITIES: - employee to successfully perform the essential functions Oversee operation and daily maintenance of the ABI of this job. Reasonable accommodations may be made 3130xl genetic analyzer - Liaise with ABI to maintain to enable individuals with disabilities to perform the the ABI 3130xl genetic analyzer - Oversee equipment essential functions. While performing the duties of this service contracts and general maintenance of the lab job, the employee is frequently required to stand, sit, - Oversee ordering, restocking of supplies and prepa- walk, and reach with hands and arms, and talk or hear. ration of invoices - Manage and oversee purchasing. - Must be able to perform repetitive motions 15% of the Bill in house and visiting researchers for reagents and time. Must be able to lift 30 lbs. The physical demands consumables - Provide orientation to the CCG and ba- are consistent with normal laboratory procedures. Em- sic training to new users - Pick up deliveries from the ployees should be able to pipette, work with bench top mailroom and store appropriately - Hazardous Mate- equipment, and must occasionally lift and/or move up rials and Health and Safety monitor - Maintain stock to 30 pounds. solutions and current MSDS database for lab - Attend TO APPLY: Go to http://calacademy.snaphire.com/- Hazardous Materials meetings and Health and Safety and submit cover letter and curriculum vitae online . meetings for the lab - Attend lab meetings and serve Applications will be considered as they are submitted; on governance committee for lab - Maintain and up- to receive full consideration send no later than Novem- date existing protocols - Monitor lab usage and record ber 7, 2008. Position available November 30, 2008. for an annual report - Other duties of a similar scope 34 EvolDir November 1, 2008
NO PHONE CALLS PLEASE. DO NOT REPLY TO edge of the basic ecology of species found in wetland THIS EMAIL MESSAGE; APPLY ONLINE VIA THE communities, including amphibians, invertebrates and LINK PROVIDED AND NOT TO THE SENDER OF fish. Has knowledge of basic techniques used to sam- THIS POSTING. ple amphibians, aquatic invertebrates, and fish. This The California Academy of Sciences is an Equal Oppor- includes collection, preservation, and identification of tunity Employer and welcomes applications from indi- specimens. Has knowledge of basic animal-care proce- viduals who will contribute to its diversity dures to maintain captive colony of amphibians. Relies on instructions and pre-established guidelines to per- [email protected] form the functions of the job. Technical skills – Ability to sample amphibian s, aquatic invertebrates and fish in wetlands. Ability to preserve specimens and to use dissecting scope to identify specimens. Ability to use basic spreadsheet or statistical software on a computer. CaseWesternReserveU Case offers a flexible benefits package including tuition AmphibianEvolution waiver for employees and dependents. To Apply: re- spond in confidence, including salary history, cover let- ter, resume, three professional references and job code #8238 (email strongly encouraged): CASE WESTERN Advertisement: Research Assistant 2, Biology (Job RESERVE UNIVERSITY, Human Resources Dept., 8238) 10900 Euclid Ave., Crawford Hall, Cleve., OH.44106- 7047, Fax: 216 368 4678, A position is available for a full-time research assis- tant to assist with field and laboratory research on the E-mail: [email protected] (word.doc) evolutionary ecology of amphibians in Dr. Michael Be- http://www.cwru.edu. nard’s laboratory at Case Western Reserve University. More information about the lab is available at: http:/- World Class Diversity /filer.case.edu/mfb38/lab/benardlab.html Description Honored to be recognized as one of the 99 Great Work- of job duties: Perform research investigating evolution places for Top Talent in Northeast Ohio (2004-2007) and population dynamics of amphibians and the ecolog- ical communities in which they exist. Essential func- [email protected] [email protected] tions include: Conduct laboratory and mesocosm ex- periments investigating the relationship between am- phibians and their predators; Participate in care of the laboratory amphibian colony; Assist with sam- pling wetlands in Ohio and Michigan to assess the CornellU CellularSystemsBiology abundance of amphibians, insects, and fish inhabiting wetland communities (Involves work outdoors carrying nets and heavy sampling equipment); Help construct and maintain outdoor field enclosures and mesocosms; Cellular Systems Biology (job #09771) Assistant or As- Identify and measure preserved specimens of amphib- sociate Professor ians, fish and insects; Collect and analyze data from A faculty position is available at the assistant/associate field samples, digital photographs, and preserved spec- professor level in the areas of computational cell bi- imens; Train new staff and students in data collection ology and/or cellular systems biology, ideally with di- and animal care; May assist in developing improved rect applications to experimental analysis. The selected techniques, projection methods or procedures. candidate will be jointly affiliated with the Depart- Requirements: Experience – 1 to 3 years of experi- ment of Biological Statistics and computational Biology ence conducting ecological or evolutionary research us- (BSCB) and the Weill Institute for Cell and Molec- ing amphibians, aquatic insects, or fish. Ideally, this ular Biology, and must have interests and expertise experience should include work with live animals in consistent with both appointments. Applicants should the field, live animals in the laboratory, and preserved have experience addressing fundamental questions in specimens. Education/licensing – Minimum require- molecular or cell biology using rigorous, quantitative ment of a bachelor’s degree in Biology, Ecology and methods; should integrate bioinformatic and experi- Evolution, Conservation Biology, or related field. Valid mental components in their research. Training in both driver’s license required. Essential skills – Has knowl- cell/molecular biology and a quantitative field such as November 1, 2008 EvolDir 35 statistics, computer science, or applied mathematics is synergize existing departmental strengths in genet- ideal, but not required. Priority will be given to ap- ics, comparative and population genomics, develop- plicants who are using model systems and joint ex- ment, gene regulation, chromatin structure and repli- perimental/computational approaches to elucidate the cation. The ideal candidate will integrate both ex- molecular basis of cellular function, development, and perimental and bioinformatic approaches. Individu- evolution. The Weill Institute for Cell and Molecu- als seeking an excellent integration of experimental, lar Biology (http://www.icmb.cornell.edu) will initially computational and comparative approaches using sev- consist of 12 faculty members housed in a recently com- eral model organisms will find Cornell a particular- pleted $160M building (Weill Hall). Applicants should ity rich environment in which to work (see, for exam- submit a curriculum vitae, a research plan (2-3 pages), ple: www.mbg.cornell.edu, www.bscb.cornell.edu, and and a statement of teaching interests, by emailing a sin- www.icmb.cornell.edu). The position includes teach- gle PDF file to bscb [email protected] (please limit to ing of undergraduate and graduate students. An ad- 15MB). Applicants should also arrange for three letters vanced degree (Ph.D., M.D., or equivalent) is required of recommendation to be submitted to the same email and postgraduate training is highly desirable. Candi- address. Questions can be addressed to Andrew Clark dates should submit electronically a CV, a 2-4 page ([email protected]) or Scott Emr ([email protected]). research statement, a 1 page teaching statement, and Applications will be reviewed beginning November 1, copies of two papers, together as a single PDF file (max 2008. A fuller version of this position advertisement 5MB) to [email protected] and arrange for three let- appeared in the September 12, 2008 issue of Science. ters of recommendation to be sent electronically to the same e-mail address. Questions can be addressed to Note the following additional searches in related area, as described in the full page ad in Science published Charles Aquadro or John Lis, co-chairs of the search Oct 10, 2008, listed below in full. If you wish to apply committee ([email protected] or [email protected]). for multiple positions, you must submit an application Application review begins on November 30, 2008. and letters to each as described below. It’s an exciting Population and/or Comparative Genomics (job and interactive group, and we look forward to having #09770) Assistant Professor outstanding individuals join us. / Thanks, Chip Aquadro and Andy Clark Full ad that appeared in Science on Oct 10, 2008 This message has been arbitrarily truncated at 5000 characters. Five Tenure-Track Faculty Positions in Gene Regu- To read the entire message look it up at http://life.biology.- lation, Population/Comparative Genomics, Computa- mcmaster.ca/˜brian/evoldir.html tional Biology, and Cellular Systems Biology Cornell University announces tenure-track faculty searches in the areas of genomics of gene regulation, population and comparative genomics, computational biology, and cellular systems biology. These new posi- CornellU ComputationalBiology- tions build on the universitys current strengths, and new faculty will have an opportunity to be associ- Bioinformatics ated with several new initiatives, including a new university-wide Center for Comparative and Population Genomics, co-directed by Andrew Clark and Charles Computational Biology and Bioinformatics Assistant, Aquadro, and the Weill Institute for Cell and Molecu- Associate or Full Professor lar Biology, directed by Scott Emr. For general infor- Applications are invited for a tenure-track position in mation about the life sciences at Cornell, please visit Computational Biology in the Computer Science de- http://www.cornell.edu/lifesciences/ . Genomic Ap- partment of Cornell University. Multiple positions are proaches to the Study of Gene Regulation (job #09798) available, and depending on experience positions can be Assistant or Associate Professor at the assistant, associate, or full professor level. Ap- The Department of Molecular Biology and Genetics, plicants must possess a Ph.D. in computer science or a Cornell University, invites applications for a tenure- Ph.D. in a mathematical, biological or physical science track faculty position at the Assistant or Associate with enough expertise in computer science to fit within Professor level. We seek an individual using genomic a CS department. The department requires demon- approaches to study gene regulation, and who would strated research abilities at the highest level as well as outstanding teaching ability and leadership qualities. 36 EvolDir November 1, 2008
Outstanding applicants in all areas of computational synergize existing departmental strengths in genet- biology will be considered. We are especially interested ics, comparative and population genomics, develop- in individuals developing novel algorithms and statis- ment, gene regulation, chromatin structure and repli- tical approaches for research in areas including evolu- cation. The ideal candidate will integrate both ex- tionary, comparative, and population genetics and ge- perimental and bioinformatic approaches. Individu- nomics; applications of new high-throughput sequenc- als seeking an excellent integration of experimental, ing and measurement technologies; the role of networks computational and comparative approaches using sev- in biological systems; and analysis of dynamical behav- eral model organisms will find Cornell a particular- ior at the sub-cellular and cellular levels. To ensure full ity rich environment in which to work (see, for exam- consideration, applications should be received by De- ple: www.mbg.cornell.edu, www.bscb.cornell.edu, and cember 1, 2008, but will be accepted until all positions www.icmb.cornell.edu). The position includes teach- are filled. Applicants should submit a curriculum vitae ing of undergraduate and graduate students. An ad- and brief statements of research and teaching interests vanced degree (Ph.D., M.D., or equivalent) is required through the web at http://www.cis.cornell.edu/apply, and postgraduate training is highly desirable. Candi- and arrange to have at least three reference letters up- dates should submit electronically a CV, a 2-4 page loaded on the Web or sent to: Human Resources Office, research statement, a 1 page teaching statement, and Faculty Search, Department of Computer Science, 4130 copies of two papers, together as a single PDF file (max Upson Hall, Cornell University, Ithaca, NY 14853-7501, 5MB) to [email protected] and arrange for three let- or via email to [email protected]. ters of recommendation to be sent electronically to the same e-mail address. Questions can be addressed to Note the following additional searches in related area, as described in the full page ad in Science published Charles Aquadro or John Lis, co-chairs of the search Oct 10, 2008, listed below in full. If you wish to apply committee ([email protected] or [email protected]). for multiple positions, you must submit an application Application review begins on November 30, 2008. and letters to each as described below. It’s an exciting Population and/or Comparative Genomics (job and interactive group, and we look forward to having #09770) Assistant Professor outstanding individuals join us. The Department of Biological Statistics and Compu- Thanks, Chip Aquadro and Andy Clark tational Biology (BSCB) in the College of Agriculture and Life Sciences at Cornell University Full ad that appeared in Science on Oct 10, 2008 Five Tenure-Track Faculty Positions in Gene Regu- / lation, Population/Comparative Genomics, Computa- tional Biology, and Cellular Systems Biology This message has been arbitrarily truncated at 5000 characters. To read the entire message look it up at http://life.biology.- Cornell University announces tenure-track faculty mcmaster.ca/˜brian/evoldir.html searches in the areas of genomics of gene regulation, population and comparative genomics, computational biology, and cellular systems biology. These new posi- tions build on the universitys current strengths, and new faculty will have an opportunity to be associ- ated with several new initiatives, including a new CornellU university-wide Center for Comparative and Population Genomics, co-directed by Andrew Clark and Charles GenomicsofGeneExpression Aquadro, and the Weill Institute for Cell and Molecu- lar Biology, directed by Scott Emr. For general infor- mation about the life sciences at Cornell, please visit Genomic Approaches to the Study of Gene Regulation http://www.cornell.edu/lifesciences/ . Genomic Ap- (job #09798) Assistant or Associate Professor proaches to the Study of Gene Regulation (job #09798) The Department of Molecular Biology and Genetics, Assistant or Associate Professor Cornell University, invites applications for a tenure- The Department of Molecular Biology and Genetics, track faculty position at the Assistant or Associate Cornell University, invites applications for a tenure- Professor level. We seek an individual using genomic track faculty position at the Assistant or Associate approaches to study gene regulation, and who would Professor level. We seek an individual using genomic synergize existing departmental strengths in genet- approaches to study gene regulation, and who would ics, comparative and population genomics, develop- ment, gene regulation, chromatin structure and repli- November 1, 2008 EvolDir 37 cation. The ideal candidate will integrate both ex- approaches to study gene regulation, and who would perimental and bioinformatic approaches. Individu- synergize existing departmental strengths in genet- als seeking an excellent integration of experimental, ics, comparative and population genomics, develop- computational and comparative approaches using sev- ment, gene regulation, chromatin structure and repli- eral model organisms will find Cornell a particular- cation. The ideal candidate will integrate both ex- ity rich environment in which to work (see, for exam- perimental and bioinformatic approaches. Individu- ple: www.mbg.cornell.edu, www.bscb.cornell.edu, and als seeking an excellent integration of experimental, www.icmb.cornell.edu). The position includes teach- computational and comparative approaches using sev- ing of undergraduate and graduate students. An ad- eral model organisms will find Cornell a particular- vanced degree (Ph.D., M.D., or equivalent) is required ity rich environment in which to work (see, for exam- and postgraduate training is highly desirable. Candi- ple: www.mbg.cornell.edu, www.bscb.cornell.edu, and dates should submit electronically a CV, a 2-4 page www.icmb.cornell.edu). The position includes teach- research statement, a 1 page teaching statement, and ing of undergraduate and graduate students. An ad- copies of two papers, together as a single PDF file (max vanced degree (Ph.D., M.D., or equivalent) is required 5MB) to [email protected] and arrange for three let- and postgraduate training is highly desirable. Candi- ters of recommendation to be sent electronically to the dates should submit electronically a CV, a 2-4 page same e-mail address. Questions can be addressed to research statement, a 1 page teaching statement, and Charles Aquadro or John Lis, co-chairs of the search copies of two papers, together as a single PDF file (max committee ([email protected] or [email protected]). 5MB) to [email protected] and arrange for three let- Application review begins on November 30, 2008. ters of recommendation to be sent electronically to the Note the following additional searches in related area, same e-mail address. Questions can be addressed to as described in the full page ad in Science published Charles Aquadro or John Lis, co-chairs of the search Oct 10, 2008, listed below in full. If you wish to apply committee ([email protected] or [email protected]). for multiple positions, you must submit an application Application review begins on November 30, 2008. and letters to each as described below. It’s an exciting Population and/or Comparative Genomics (job and interactive group, and we look forward to having #09770) Assistant Professor outstanding individuals join us. The Department of Biological Statistics and Computa- Thanks, Chip Aquadro and Andy Clark tional Biology (BSCB) in the College of Agriculture and Full ad that appeared in Science on Oct 10, 2008 Life Sciences at Cornell University seeks candidates for a tenure-track position at the Assistant Professor level. Five Tenure-Track Faculty Positions in Gene Regu- We expect that the successful applicant will focus on lation, Population/Comparative Genomics, Computa- developing tional Biology, and Cellular Systems Biology / Cornell University announces tenure-track faculty searches in the areas of genomics of gene regulation, This message has been arbitrarily truncated at 5000 characters. population and comparative genomics, computational To read the entire message look it up at http://life.biology.- biology, and cellular systems biology. These new posi- mcmaster.ca/˜brian/evoldir.html tions build on the universitys current strengths, and new faculty will have an opportunity to be associ- ated with several new initiatives, including a new university-wide Center for Comparative and Population Genomics, co-directed by Andrew Clark and Charles Aquadro, and the Weill Institute for Cell and Molecu- CornellU lar Biology, directed by Scott Emr. For general infor- PopulationComparativeGenomics mation about the life sciences at Cornell, please visit http://www.cornell.edu/lifesciences/ . Genomic Ap- proaches to the Study of Gene Regulation (job #09798) Assistant or Associate Professor Population and/or Comparative Genomics (job #09770) Assistant Professor Cornell University, The Department of Molecular Biology and Genetics, Ithaca, NY Cornell University, invites applications for a tenure- track faculty position at the Assistant or Associate The Department of Biological Statistics and Computa- Professor level. We seek an individual using genomic tional Biology (BSCB) in the College of Agriculture and Life Sciences at Cornell University seeks candidates for 38 EvolDir November 1, 2008 a tenure-track position at the Assistant Professor level. ated with several new initiatives, including a new We expect that the successful applicant will focus on university-wide Center for Comparative and Population developing and applying statistically rigorous methods Genomics, co-directed by Andrew Clark and Charles to large-scale data analysis in population and/or com- Aquadro, and the Weill Institute for Cell and Molecu- parative genomics, and will play a central role in the lar Biology, directed by Scott Emr. For general infor- departments program in research and teaching. BSCB mation about the life sciences at Cornell, please visit is dedicated to the application of statistical, compu- http://www.cornell.edu/lifesciences/ . Genomic Ap- tational, and mathematical approaches to problems in proaches to the Study of Gene Regulation (job #09798) modern biology (http://www.bscb.cornell.edu). The Assistant or Associate Professor department has broad strengths in statistics and com- The Department of Molecular Biology and Genetics, putational biology, including comparative, evolution- Cornell University, invites applications for a tenure- ary, quantitative, and population genomics, Bayesian track faculty position at the Assistant or Associate and computationally intensive statistics, and machine Professor level. We seek an individual using genomic learning. The department occupies a key position at approaches to study gene regulation, and who would the interface between the quantitative and biological synergize existing departmental strengths in genet- sciences at Cornell and offers rich opportunities for ics, comparative and population genomics, develop- collaborations with other investigators on the Ithaca ment, gene regulation, chromatin structure and repli- campus, and at the Weill Cornell Medical College in cation. The ideal candidate will integrate both ex- New York City. Some of the research areas with par- perimental and bioinformatic approaches. Individu- ticularly high potential for collaboration include: hu- als seeking an excellent integration of experimental, man genetics, agricultural genomics, canine genomics computational and comparative approaches using sev- and other aspects of veterinary medicine, and evo- eral model organisms will find Cornell a particular- lutionary genomics of diverse organisms. Applicants ity rich environment in which to work (see, for exam- should submit a cover letter, research statement (2- ple: www.mbg.cornell.edu, www.bscb.cornell.edu, and 3 pages), statement of teaching interests (1-2 pages), www.icmb.cornell.edu). The position includes teach- and a curriculum vitae as well as 3-5 publications of ing of undergraduate and graduate students. An ad- particular relevance by emailing a single PDF file to vanced degree (Ph.D., M.D., or equivalent) is required bscb [email protected] (please limit to 15MB). Ap- and postgraduate training is highly desirable. Candi- plicants should also arrange for three letters of recom- dates should submit electronically a CV, a 2-4 page mendation to be submitted directly to the same email research statement, a 1 page teaching statement, and address. Questions can be directed to Charles Aquadro, copies of two papers, together as a single PDF file (max chair of the search committee, at [email protected]. 5MB) to [email protected] and arrange for three let- Applications will be reviewed beginning November 15, ters of recommendation to be sent electronically to the 2008. same e-mail address. Questions can be addressed to Note the following additional searches in related area, Charles Aquadro or John Lis, co-chairs of the search as described in the full page ad in Science published committee ([email protected] or Oct 10, 2008, listed below in full. If you wish to apply / for multiple positions, you must submit an application and letters to each as described below. It’s an exciting This message has been arbitrarily truncated at 5000 characters. and interactive group, and we look forward to having To read the entire message look it up at http://life.biology.- outstanding individuals join us. mcmaster.ca/˜brian/evoldir.html Thanks, Chip Aquadro and Andy Clark Full ad that appeared in Science on Oct 10, 2008 Five Tenure-Track Faculty Positions in Gene Regu- lation, Population/Comparative Genomics, Computa- tional Biology, and Cellular Systems Biology EastCarolinaU EvoDevo Cornell University announces tenure-track faculty searches in the areas of genomics of gene regulation, population and comparative genomics, computational Hi, biology, and cellular systems biology. These new posi- We would be very interested to have Evo-Devo folks tions build on the universitys current strengths, and apply to the positions listed below, to appear shortly new faculty will have an opportunity to be associ- in Science. November 1, 2008 EvolDir 39
Thanks, Jeff Hi all, Department of Biology ’ Two Assistant/Associate Pro- Please find below three permant job positions that may fessors be of interest to the evol dir community. The Department of Biology at East Carolina University, 1. + MTT Agrifood Research Finland has a vacancy the third largest campus in the North Carolina Uni- for versity system, seeks to enhance an emerging strength Principal Research Scientist in development by inviting applications for 2 full time tenure track Developmental Biologists at the rank of with permanent appointment leading and generat- Assistant or Associate Professor beginning August 17, ing research projects addressing use of genomic tools 2009. Preference will be given to applicants with addi- for farm animal populations. The research will en- tional expertise in one or more of the following areas: compass the utilisation of new high-throughput DNA Neurobiology, Cell Biology, Human Anatomy, Compar- marker sets for improved knowledge and management ative Anatomy, Evolution and Histology. Qualified ap- of genetic variation and development of selection pro- plicants will have a Ph.D. and postdoctoral research grammes. It will be part of the new research pro- experience. The successful candidate will establish a grammes (e.g. Sustainable use of genetic resources) vigorous, well-funded research program, contribute to at MTT and will exploit the close collaboration with undergraduate and graduate teaching, and mentor stu- animal biometrical genetics and genomics at MTT. dents in the M.S. and Ph.D. programs. Appropri- The successful candidate will join in the Genetic Di- ate service to the university, community and profes- versity group of Biotechnology and Food Research at sion is expected. Please visit our website at http://- MTT where he/she also participates in ongoing re- www.ecu.edu/biology for more information on the De- search projects, scientific writing, maintaining and cre- partment of Biology. ating relationships with national and international re- Applicants must submit a cover letter, curriculum vi- search and industry partners and initiating and convey- tae, statements of research interests and teaching ex- ing ideas on new research projects. perience/philosophy, and the names and contact infor- The Genetic Diversity group conducts research tasks mation for three references online at www.jobs.ecu.edu associated with the genetic diversity of farm animals < http://www.jobs.ecu.edu/ > . For further infor- and plants, and coordinates the national programmes mation, contact Dr. Tony Capehart, Chair - Devel- for these sectors in Finland. The research group con- opmental Biologists Search Committee, Department sists of six researchers and has over the years been of Biology, East Carolina University, Greenville, NC hosting several international visitors and post-doc sci- 27858. Review of applications will begin October entists. It is carrying out highly recognised research on 27, 2008. East Carolina University is an Equal Op- quantifying the genetic variation of farm animal pop- portunity/Affirmative Action Employer that accommo- ulations with molecular genetic tools. The group is dates individuals with disabilities. Individuals request- a regular partner in EU research programmes on as- ing a disability accommodation should call the ECU sessment, management and sustainable utilisation of Office of Disability Support services at 252-737-1016 genetic variation. MTT experts are also taking part (Voice/TTY/Relay). Proper documentation of identity in international governmental organisations on genetic and employment are required at the time of employ- resources. For further information see www.mtt.fi/- ment. Official transcript required upon employment. english/ or contact Professor Asko Maki-Tanila (e-mail Jeffrey S. McKinnon, Chair Dep. of Biology, N108 Asko.Maki-Tanila@mtt.fi; phone +358 3 4188 3601 or Howell Science Complex East Carolina University +358 40 755 2339). Greenville, NC 27858-4353 Phone 252-328-5258 mck- The successful candidate should have PhD in animal [email protected] breeding and genetics or in a closely related field and MCKINNONJ
Kirjaamo, 31600 Jokioinen, Finland or to e-mail: kir- / jaamo@mtt.fi. MTT applies individual salary negotia- tions. This message has been arbitrarily truncated at 5000 characters. MTT Agrifood Research Finland is a research institute To read the entire message look it up at http://life.biology.- acting under the Ministry of Agriculture and Forestry. mcmaster.ca/˜brian/evoldir.html 2. + MTT Agrifood Research Finland has a vacancy for Principal Research Scientist with a permanent position as a leader of research projects in modelling genomic data and developing FloridaInternationalU methods to utilize genomic data for improving qual- PopulationGenetics ity of farm animal products. Research will target on meat quality, health, fertility, and feed efficiency traits of pigs. Developed methods will be applied to other The Department of Biological Sciences at Florida Inter- farm animal species as well. The research projects are national University is seeking a scientist for a faculty part of MTT’s new research program “Well-being from position (open rank) in population genetics. Our de- diet” and research will be conducted in close cooper- partment has a strong multidisciplinary emphasis; we ation with MTT’s research groups working on animal are looking for a colleague to strengthen our programs genomics, animal production, and on food research with in evolutionary biology, ecology, and molecular and cel- a focus in developing nutritional recommendations for lular biology. We seek applicants with a Ph.D. and an humans. exceptional research record in population genetic stud- ies. All areas of empirical or theoretical population ge- The successful candidate will join in the Biometrical netics will be considered. Candidates will contribute to Genetics group of Biotechnology and Food Research our undergraduate and graduate teaching programs in at MTT where she/he also participates in ongoing re- population genetics and general genetics. Interested ap- search projects, in scientific writing, and in maintaining plicants should send their CV, including a bibliography and creating of relationships with national and interna- of published work, a brief description of research ac- tional research and industry partners. complishments and objectives, a statement of teaching The Biometrical Genetics group is an internationally interests, selected reprints, and the names, addresses, recognized group developing breeding schemes for farm and contact information for at least three references animals, and methods for breeding value estimation, to: Tim Collins, Chair, Population Genetics Search, and studying quantitative genetics of production, qual- Dept. Biological Sciences, FIU, 11200 SW 8th St., Mi- ity and health traits in animals. The group has close ami, Florida 33199 (collinst@fiu.edu). Review of appli- intellectual ties to top-quality research groups in Eu- cations will begin December 1, 2008, and continue until rope, North America and Australia and to national the position is filled. Florida International University and international breeding organisations. The group is an Equal Opportunity Educator and Employer. consists of 12 researchers. For further information see Tim Collins, Dept. of Biological Sciences, Florida www.mtt.fi/english/ or contact research manager Dr. International University, HLS 419D, University Park, Esa M¨antysaari (email: Esa.Mantysaari@mtt.fi; mo- Miami, FL 33199 USA, [email protected], FAX bile +358 40 510 6013) or group leader Dr. Martin (305)348-1986, Phone: Ofc.(305)348-1730, lab -3110, Lidauer (email: Martin.Lidauer@mtt.fi; phone: +358- Express mail address: 112th Ave. & SW 8 St., OE 3-41883604). Bldg., Rm. 167 The successful candidate should have a postgraduate Tim Collins
Gettysburg College invites applications for a two-year dates whose interests in behavior extend to cognitive visiting assistant professor position in the Department evolution, ecology, or physiology, and whose primate of Biology beginning August, 2009, with possibility of behavioral studies are explicitly related to human evo- a two-year renewal. Ph.D. in organismal (preferably lution. A strong doctoral record is required and the vertebrate) and/or population biology, a commitment Department seeks candidates with exceptional promise to teaching in the liberal arts tradition, and a research as scholars and teachers to offer courses at the under- program that can involve undergraduates are essential. graduate and graduate levels. The Biological Anthro- The successful candidate will teach in our core introduc- pology Wing administers two large and successful un- tory sequence and would offer upper division courses in dergraduate concentrations, Human Evolutionary Biol- area of specialization (e.g., vertebrate zoology). Poten- ogy and Biological Anthropology, hence excellence in tial areas of research expertise are open. undergraduate teaching is a priority. Graduate educa- Gettysburg College is a highly selective liberal arts tion in the wing stresses integration of laboratory and field research and the cooperative training and men- college located within 90 minutes of the Washing- toring of Ph.D. candidates. Harvard University is an ton/Baltimore metropolitan area. Established in 1832, the College has a rich history and is situated on a 220- Equal Opportunity/Affirmative Action employer, and acre campus with an enrollment of over 2,600 students. applications from women and minorities are particu- Gettysburg College celebrates diversity and welcomes larly encouraged. The appointment is expected to be- applications from members of any group that has been gin on July 1, 2009. Interested candidates should send a CV, example publications, teaching evaluations if avail- historically underrepresented in the American academy. able, and the names and addresses of three potential The College assures equal employment opportunity and prohibits discrimination on the basis of race, color, na- references, by December 1, 2008 to: Prof. Richard tional origin, gender, religion, sexual orientation, age, Wrangham, Biological Anthropology Search Commit- and disability. tee Chair, Department of Anthropology, Peabody Mu- seum, Harvard University, Cambridge, MA 02138 USA, Send by post (no electronic applications) curriculum vi- or by email to [email protected]. tae and statement of teaching and research goals and have three letters of reference (at least one of which can Megan Countey
This message has been arbitrarily truncated at 5000 characters. Project Summary To read the entire message look it up at http://life.biology.- Atlantic salmon are typically migratory. After a year mcmaster.ca/˜brian/evoldir.html or more of freshwater life, juvenile Atlantic salmon un- dergo the parr-smolt transformation (PST), a form of metamorphosis involving behavioural, anatomical and physiological changes necessary to survive the marine environment. Smolts migrate to the ocean for a pe- riod of feeding and growth before returning with a high InstZoology London ResTech degree of accuracy to their natal stream as adults to SalmonGenetics spawn. Returning fish are thought to use a variety of orientation mechanisms to accurately navigate from the open ocean back to the home streams within the INSTITUTE OF ZOOLOGY ZOOLOGICAL SOCI- complex structure of large rivers. However, olfaction ETY OF LONDON and odour memory appear to be dominant mechanisms RESEARCH TECHNICIAN POST MOLECULAR and there may be population-specific odours in addi- ECOLOGY Starting salary £20,524 (including London tion to environmental cues that are important for hom- Weighting) ing. Odorant receptor genes encoding molecules that recognise and specifically bind to odours are likely to Applications are invited for a post as research techni- be important elements of these mechanisms. cian on a NERC-funded project to investigate gene ex- pression of odorant receptor genes in Atlantic salmon Samples will be collected throughout the year from ju- taken from different populations at different life stages. veniles representing different populations which will be Experience in molecular biology techniques, particu- exposed to familiar and unfamiliar water sources (per- larly RNA techniques and quantitative PCR is essen- haps containing different specific odours). These juve- tial, a knowledge of ELISA assays desirable. niles have been raised in a hatchery in Scotland. We will extract RNA from the olfactory rosette and make The post is for 12 months and is available from 1st first strand cDNA. We will then use quantitative real- February 2009. time PCR to amplify the cDNA to assess the level of For informal enquiries contact: Dr W.C. Jordan expression of a suite of odorant receptor genes in each ([email protected] Tel: 020 7449 6631) or Dr K.L. sample. Ciborowski ([email protected] Tel: 020 7449 Our aim is to test the general hypothesis that changes 6317). in expression of odorant receptor genes expressed Applications, with a current CV and names and full in the olfactory epithelium affect retention of home contact details of three referees, should be sent to Hu- stream memory in terms of odorant cues that juvenile man Resources, Zoological Society of London, Regent’s salmonids are exposed to during periods of enhanced Park, London NW1 4RY, UK (email [email protected]), from olfactory learning. We hypothesise that: whom further details are available. (a) populations differ in the suite of OR genes that CLOSING DATE: 31st October 2008 they express, although they may possess a common suite. (b) there are changes in OR gene expression Read about the Institute of Zoology on http://- in individual Atlantic salmon during PST and other www.zoo.cam.ac.uk/ioz/ and ZSL’s work on http://- sensitive periods of the juvenile life-cycle. (c) tempo- www.zsl.org ral variation in expression of OR genes is associated REGISTERED CHARITY NO. 208728 with class of gene, with MOR genes expressed earlier INSTITUTE OF ZOOLOGY ZOOLOGICAL SOCI- in PST than VNR genes. (d) exposure to different sets ETY OF LONDON of population-specific odours during sensitive periods 44 EvolDir November 1, 2008 induces expression of different suites of OR genes To view entire vacancy #080873 and apply, create an electronic application at http://www.iastatejobs.com Job Description that includes a cover letter briefly summarizing qual- The technician will work at the Institute of Zoology in ifications, curriculum vitae, a statement summarizing Regent’s Park, London, NW1, under the supervision past, present and future research plans, and a brief of Dr Bill Jordan and Dr Kate Ciborowski. They will statement of teaching interests and philosophy. Appli- receive training (if required) and experience of RNA cants should arrange for three letters of reference to be extraction, first strand cDNA synthesis, quantitative sent to: Systems Biology Search Committee, Iowa State PCR techniques and ELISA assays. University, Department of Genetics, Development and Starting salary will be £20,524 inclusive of London Cell Biology, 1210 Molecular Biology Building, Ames, weighting and the post will be for a fixed term of 12 IA 50011 or to [email protected] . months. To guarantee consideration the applications must be IOZ website: http://www.zoo.cam.ac.uk/ioz/- received by November 14, 2008. index.htm ZSL website: http://www.zsl.org/ Closing Applications from women and members of under rep- date: 31st October 2008 resented groups are strongly encouraged. Iowa State The Zoological Society of London is incorporated by University is an EO/AA Employer. Royal Charter Principal Office England. Company “Karin S. Dorman”
The Natal Museum, one of the largest, leading national IowaStateU SystemsBiology Heritage Institutions in South Africa, invites applica- tions for CHIEF CURATOR: NATURAL SCIENCES KEY RESPONSIBILITIES: The Natal Museum scien- Comparative, evolutionary approaches to understand- tists conduct research in various fields of natural sci- ing systems welcome. ences. The main responsibilities for this position are: IOWA STATE UNIVERSITY Where you can become 1. Implement a focussed programme of hypothesis- your best. driven research, with emphasis on the unique resources housed in the Natal Museum: ideally insects (Diptera SYSTEMS BIOLOGIST ASSISTANT PROFESSOR or Hemiptera), or other non-insect invertebrates such The Department of Genetics, Development and Cell as arachnids, myriapods and earthworms. Register for Biology (http://www.gdcb.iastate.edu/) invites appli- higher postgraduate qualification where appropriate. 2. cations for a tenure-track faculty position at the level Augment the collections through fieldwork where ap- of Assistant Professor. We seek highly qualified appli- propriate. 3. Critically evaluate and interpret data, cants from all backgrounds relevant to Systems Biology. and prepare high quality manuscripts that meet the Specific areas of interest include, but are not limited to: standards of the international scientific community. 4. analysis of developmental, neural, metabolic or regula- Formulate targeted research projects and submit ap- tory networks, using experimental and computational plications to external funding bodies. Report regu- or modeling approaches. The successful candidate will larly and manage efficiently budgeting and expenditure. be expected to establish and maintain a vigorous, in- 5. Ensure efficient management and databasing of the dependent, extramurally funded research program, and collections, and provide guidance and scientific advice to participate in undergraduate and graduate teaching. where necessary. 6. Provide junior research staff with Qualified candidates must have a Ph.D. or other termi- advice and guidance i.r.o. collections management and nal degree, and demonstrated potential for excellence research projects, facilitate and supervise their further in research and teaching. The Department is sensitive training and post-graduate studies. 7. Interact with to the needs of dual-career applicants and is committed national and international research community, advise to increasing diversity within the university community. government departments, serve on scientific review and November 1, 2008 EvolDir 45 evaluation panels (e.g. NRF), contribute to professional at New Mexico State University. The field of ecology is societies. 8. Engage in collaborative research projects broadly construed by the search community to include to enhance research capacity. 9. Advise on produc- evolutionary ecologists. tion of African Invertebrates, one of the Natal Museum Sincerely, Tim Wright scholarly journals. Assistant Professor-Ecology-New Mexico State Univer- REQUIREMENTS: PhD degree in relevant field, or sity Masters degree with considerable experience, evidence of an active independent research programme, with The Department of Biology at New Mexico State Uni- at least five years research experience, publication versity invites applications for a tenure-track Assistant record and curatorial experience. Experience and a Professorship in Ecology requisition #2008011802. We proven record in attracting independent research fund- seek an individual committed to undergraduate and ing. Broad discipline-based knowledge and understand- graduate education with an outstanding record of re- ing the role of museum research are essential, plus a search achievement to develop an extramurally funded high level of expertise in the relevant research field, research program. The successful candidate will hold both practical and intellectual. Excellent writing, pre- a Ph.D. in biology or a related field. Post-doctoral sentation, communication and organizing skills. Valid experience is preferred. The Department of Biology drivers licence. serves undergraduate majors in Biology, Microbiology and Conservation Ecology, and M.S. and Ph.D. gradu- Salary: Negotiable at salary level 9 of Public Service ate students. We maintain active and diverse research, Employees. teaching and outreach programs with strong HHMI, All applications should be hand delivered at the Mu- NIH, and NSF support. Research is also supported by seum’s Reception or posted to: natural history museums and affiliations with the Jor- The Deputy Director: Natal Museum Private Bag X nada Basin LTER program and the Institute for Ap- 9070 Pietermaritzburg 3200 plied Biosciences. Please visit our website at http:/- /biology-web.nmsu.edu/ Application materials consist- The closing date for the submission of applications is ing of a signed letter of application, current curriculum Friday, 17 October 2008 at 12:00. Late applications vitae, statements of teaching philosophy and research will not be accepted. Please send a covering letter stat- plans, and contact information for at least three ref- ing the position you are applying for, a detailed resume erences, should be sent to: Ecology Search, PO Box with a list of references and certified copies of all qual- 30001, MSC 3AF, New Mexico State University, Las ifications and a copy of your identity document. Fur- Cruces, NM 88003, or as a single PDF file (include last ther enquiries regarding these positions can be obtained name in file name) by e-mail to [email protected]. from the Deputy Director. If you have not heard from Application review will begin 15 November 2008 and us by the 14 November 2008, consider your application continue until position is filled. NMSU IS AN EEO/AA to have been unsuccessful. EMPLOYER. Offer of employment is contingent upon Dr Mikhail (Mike) B. Mostovski Assistant Director availability of funding, upon verification of eligibility for Editor-in-Chief, African Invertebrates Department employment in the United States, and upon completion of Natural Sciences Natal Museum, P. Bag 9070, of applicable background review. www.africaninvertebrates.org.za Pietermaritzburg – Assistant Professor Department of Biology MSC 3200, South Africa Tel: +27-(0)33-3410529 (direct); 3AF New Mexico State University Las Cruces, NM +27-(0)33-3451404 (reception) Fax:+27-(0)33-3450561 88003 Phone: 575-646-1136 Office: 375 Foster Hall E-mail: [email protected] www.nmsa.org.za Behavior lab: 301 Foster Hall, 575-646-4863 Ge- [email protected] netics lab: 455 Foster Hall, 575-646-4791 http://- biology-web.nmsu.edu/twright “Timothy F. Wright”
NewMexicoStateU EvolutionaryEcol NewYorkU GenomicsSystemsBiol
Please find below an advertisement for a tenure-track faculty position in Ecology in the Biology Department As advertised in Science and Nature: 46 EvolDir November 1, 2008
FACULTY POSITIONS Center for Genomics & Sys- tems Biology DEPARTMENT OF BIOLOGY As part of a multi-year hiring plan, New York Univer- sity’s Center for Genomics & Systems Biology in the Department of Biology invites applications for multi- NorthCarolinaStateU ple faculty positions (rank open) to begin September EvolutionaryBiology 1, 2009, or as negotiated, pending administrative ap- proval. Candidates investigating fundamental biolog- ical and cellular mechanisms at the level of systems and networks using high throughput approaches and/or Multiple Faculty Positions in Biology computational methods are especially encouraged to The newly renamed Department of Biology at North apply. Carolina State University is undergoing a period of Candidates will be expected to have or develop active, major expansion and we invite outstanding scientists externally funded research programs and to participate in all areas of biology to apply for multiple tenure- in the department’s teaching activities at both the un- track/tenured positions at the ASSISTANT or ASSO- dergraduate and graduate levels. The Center and the CIATE PROFESSOR level. Outstanding senior ap- Biology Department (http://biology.as.nyu.edu/ ) of- plicants also may be considered. Applications from fer an outstanding and collegial research environment. dual-career couples or groups of individuals are en- Strong interactions exist with faculty in its associated couraged. We seek individuals studying fundamental Center for Developmental Genetics (which is under- problems in any area of biology and at any level from going a parallel faculty search), and with other divi- molecules to ecosystems. We are particularly inter- sions within NYU including, The Courant Institute of ested in applicants using innovative theoretical, com- Mathematical Sciences and The Skirball Institute for putational and/or experimental approaches to advance Biomolecular Medicine. our mechanistic and quantitative understanding of liv- Applications should include cover letter, research state- ing systems. Scientists working at disciplinary inter- ment, curriculum vitae, and three letters of reference. faces and/or using integrated/systems approaches are Electronic applications as PDF files should be sent to especially encouraged to apply. Applicants are ex- [email protected] pected to develop a high-impact research program and to participate in undergraduate, graduate, and post- Selection will begin November 1, 2008 and applications doctoral education and training. Formal requirements received before this date will be guaranteed full eval- include a PhD in Biology or in a related field plus an es- uation. Letters of reference should be sent electroni- tablished track record of accomplishments appropriate cally or to: Chair of the Search Committee, Center for for appointment as an Assistant or Associate Profes- Genomics & Systems Biology, Department of Biology, sor of Biology. To view a detailed description of the New York University, 1009 Silver Center, 100 Washing- Department, applicants are encouraged to visit http:/- ton Square East, New York, N.Y. 10003. /www.cals.ncsu.edu/biology/ Candidates should sub- NYU is an Equal Opportunity/Affirmative Action Em- mit an electronic copy of their cover letter, curriculum ployer. vitae, statement of research accomplishments and fu- ture research plans, description of teaching experience NYU welcomes applicants whose research integrates and interest, and contact information for three refer- evolutionary questions with techniques from genomics ences at http://ncsu.edu/jobs under position number and systems biology. The department is home to a com- 01-16-0815. After a preliminary review, referees will be munity of researchers in evolutionary theory, quantita- contacted and asked to submit letters of recommenda- tive genetics, population genetics, phylogenetics, evolu- tion for selected candidates. The review of applicants tionary developmental biology, evolutionary functional will begin on November 14, 2008 and will continue until genomics, and molecular evolution. candidates are selected. Matthew Rockman Department of Biology and Center We welcome the opportunity to work with candidates to for Genomics & Systems Biology [email protected] identify suitable employment opportunities for spouses [email protected] [email protected] or partners. AA/EOE. NC State University welcomes all persons without regard to sexual orientation. Per- sons with disabilities requiring accommodations in the application and interview process please call (919) 515- 2741. November 1, 2008 EvolDir 47 [email protected] to hire a tenure-track Assistant Professor to start August 2009. Duties include developing a rigorous externally-funded research program in plant evolution, ecology, and/or biogeography; teaching undergraduate and graduate courses and mentoring students; and serv- OhioU EvolutionaryBiology ing as Herbarium Director. Preference will be given to applicants who pursue research that includes field and collections-based studies that support the Herbarium (a collection of 140,000 specimens largely representing Evolutionary Biologist the Great Plains flora). Ph.D. and postdoctoral ex- The Department of Biological Sciences, Ohio Univer- perience are required. Submit an application as one sity in Athens invites applications for a tenure-track pdf to [email protected]. Include cover let- Assistant Professor in Evolutionary Biology. We seek ter; CV; statements of research, herbarium, and teach- to hire a candidate whose research interests comple- ing interests and philosophies; contact information for ment the current strengths within the department and at least three references. Review of applications will who would contribute to the climate of diversity in begin December 1 and continue until position is filled. the College. Applications will be accepted from can- Oklahoma State University is an AA/EEO/E-Verify didates working with animal systems, across the en- employer committed to diversity. OSU-Stillwater is a tire range of this discipline. The department partic- tobacco-free campus. ularly encourages applications from individuals work- For more information contact Linda Watson at ing in the areas of phylogenetics, comparative biol- [email protected] or 405-744-5559. ogy and/or animal behavior. A Ph.D. is required in a related area and postdoctoral experience is preferred. “Watson, Linda”
The Department of Biology at San Francisco State Uni- ish Ministry of Finance and the Confederation of Pro- versity ˆaAdvancing Global Health and the Biosphere. fessional Unions. Karen Crow-Sanchez Assistant Professor Department Applications should be addressed to The Faculty of Sci- of Biology San Francisco State University 1600 Hol- ence, University of Aarhus, Ny Munkegade, Building loway Ave San Francisco, CA 94132 1520, DK-8000 Aarhus C, Denmark, and marked 211/5- 40. [email protected] (415) 405-2760 Karen Crow
(biological asymmetries, software, course notes) Found- UCSB is an Equal Opportunity Affirmative Action Em- ing Chair, Comparative Morphology & Development ployer section, Canadian Society of Zoologists. For info. Todd Oakley, Associate Professor Ecology Evolution see: http://www.biology.ualberta.ca/CMD/home.htm and Marine Biology University of California- Santa Bar- [email protected] bara, CA 93106 [email protected] [email protected]
UCaliforniaSantaBarbara EvolutionaryGenomics UCincinnati EvoDevo
Assistant Professor - UCSB - Evolutionary Genomics The Department of Ecology, Evolution, and Marine Bi- ology at the University of California, Santa Barbara invites applications for a tenure-track faculty position starting at the rank of Assistant Professor. We are searching broadly for an interactive scientist who ad- dresses fundamental questions in evolutionary biology Two faculty positions in Integrative Biology at the Uni- via analysis of large-scale gene sequence and/or expres- versity of Cincinnati sion data sets. Applications from those who can take The Department of Biological Sciences, University of advantage of UCSB’s world class marine facilities and Cincinnati, will fill two tenure-track Assistant Profes- international standing in marine biology are especially sor positions in Integrative Biology studying: (1) AN- encouraged. The successful candidate is expected to IMAL DEVELOPMENT at genetic or cellular levels, develop an internationally recognized research program and addressing questions of broad interest, e.g., evo- and to teach graduate and undergraduate students in lution or gene-environment interactions, and (2) ef- his or her area of expertise. The successful applicant fects of ENVIRONMENTAL STRESS from natural or will have a PhD and clear evidence of research produc- human-induced causes on processes at cellular, popu- tivity. lation or community levels in plants, microbes, or ani- Applicants should submit 1) an application letter 2) mals. Applicants must hold a Ph.D. and have postdoc- a curriculum vitae 3) a statement of research accom- toral experience. Successful candidates will build an plishments and future plans 4) a statement of teaching outstanding, externally-funded research program, and experience and interests, 5) up to three selected publi- contribute to undergraduate and graduate teaching. In- cations and 6) names and contact information of three dividuals complementing existing strengths in behav- persons willing to provide letters of reference (the com- ior, neuroscience or evolutionary biology in the depart- mittee will solicit letters for a short-list of candidates). ment (http://bioweb.ad.uc.edu) are encouraged to ap- Submit applications to: ply. Apply online at https://www.jobsatuc.com (Po- sition Numbers 28UC2634, 28UC2635) by submitting Evolution Search Committee Department of Ecology, cover letter, curriculum vita, and statements of research Evolution, and Marine Biology University of California interests and teaching philosophy. Send three letters of Santa Barbara, CA 93106-9610 U.S.A recommendation and three representative reprints sepa- Alternatively, applications can be sent electronically, rately (PDF preferred) to: [email protected]. Re- and questions addressed to: view of applications will begin November 30, 2008. The University of Cincinnati is an affirmative action/equal [email protected] opportunity employer. Women, minorities, disabled Review of applicants will begin November 1 and will persons, and Vietnam Era and disabled veterans are continue until the position has been filled encouraged to apply. – Michal Polak Associate Pro- The department is especially interested in candidates fessor Department of Biological Sciences University of who can contribute to the diversity and excellence of the Cincinnati Cincinnati, OH 45221-0006 USA Tel: +1 academic community through research, teaching and (513) 556-9736 Email: [email protected] service [email protected] [email protected] 52 EvolDir November 1, 2008
proaches that combine molecular biology, genetics and bioinformatics to address complex environmental prob- lems and who can participate in an interdisciplinary Ph. D. program. The research specialty of the appli- UFlorida InsectVectorGenomics cants could include molecular evolution, phylogeogra- phy, phylogenetics, modeling or other cross-disciplinary fields. The successful applicant is expected to establish an externally funded research program, direct the re- ASSOCIATE or FULL PROFESSOR: Genet- search of students at the undergraduate, masters and ics/Genomics of Insect Vectors of Disease. Back- doctoral levels, and interact with a dynamic group of ground in genetics and/or comparative or functional ecologists, environmental , evolutionary and computa- genomics. Initially the incumbent will study the tional biologists. Excellence in teaching at the under- genetics/genomics of the Asian citrus psyllid, vector graduate and graduate levels is expected. A Ph.D. of the citrus greening pathogen. For more information and postdoctoral training (or equivalent professional on the position, please contact Dr. Marjorie Hoy experience) are required. Members of underrepresented ([email protected]fl.edu ). QUALIFICATIONS:Ph.D. To groups and women are strongly encouraged to apply. insure full consideration, applications must be submit- ted by December 15, 2008. Formal review begins then Applicants should send a statement of teaching and re- and will continue until a suitable candidate is identi- search interests and goals, curriculum vitae, 3-5 rep- fied. Go to https://jobs.ufl.edu , Requisition 0800874 resentative reprints, and three letters of reference to to apply. Attach: 1) letter of application describing Ron Etter, Bioinformatics/Molecular Evolution Search, professional interests and graduate level courses you Biology Department, University of Massachusetts, 100 may teach, 2) curriculum vitae, 3) PDF files of 2-3 Morrissey Blvd., Boston, MA 02125. For further in- publications. Send 3 letters from referees to: Dr. formation, visit the Biology Department website at Marjorie A. Hoy, Dept. Entomology & Nematology, www.bio.umb.edu, or contact Ron Etter, Chair of POB 110620, Univ. Florida, Gainesville 32611-0620. Search Committee, at [email protected] or (617)-287- Additional information: Tel: 352-392-1901 X 153, 6613. Target date for receipt of applications is Nov. 15, [email protected]fl.edu 2008, but applications will be reviewed until the posi- tion is filled. Marta L. Wayne, PhD Director, UF Genetics & Ge- nomics Graduate Program Associate Professor P.O. UMass Boston is an Affirmative Action, Equal Oppor- Box 118525 Department of Biology University of tunity, Title IX employer. Florida Gainesville, FL 32611-8525 (courier: B30 Bar- Ron J. Etter Professor Biology Department University tram Hall) vox: 352-392-9925 fax: 352-392-3704 http:/- of Massachusetts Boston, MA 02125 Voice 617-287-6613 /www.zoo.ufl.edu/mlwayne [email protected] FAX 617-287-6650 email [email protected] Ron Etter
UMassachusetts Boston MolecularEvol UMemphis BioinformaticsPhylogeneticist BIOINFORMATICS/MOLECULAR EVOLUTION ASSISTANT PROFESSOR UNIVERSITY OF MAS- SACHUSETTS BOSTON BIOINFORMATICS PHYLOGENETICIST The Department of Biology at the University of Mas- Applications are invited for a tenure-track Assistant sachusetts, Boston seeks applicants for a full-time Professor position in the Department of Biology at The tenure track Assistant Professor who specializes in University of Memphis for a phyloinformaticist. We molecular evolution, phylogenetics, bioinformatics or a are looking for candidates who have a strong back- closely related field starting in September 2009. Appli- ground in biodiversity science, in the areas of phyloge- cants should be well versed in evolutionary and ecolog- netics, biogeography, computer science, bioinformatics, ical theory. Applications will be particularly welcome systematics and evolution of megadiverse and under- from candidates who utilize creative experimental ap- studied species groups. The candidate will have bioin- November 1, 2008 EvolDir 53 formatics training, show potential to collaborate with Molecular Biology, Biochemistry, Neuroscience, Devel- existing faculty, and participate in the interdisciplinary opmental Genetics, Environmental Biology, or Toxicol- Bioinformatics Program. The successful applicant will ogy. The area of research is open, but should connect be expected to develop an externally funded research to existing faculty and departmental strengths and re- program, supervise PhD and MS students, and con- sources. The successful applicant is expected to develop tribute to the teaching curriculum in evolution, as well and maintain an active externally funded research pro- as develop courses in computational phyloinformatics, gram leading to peer-reviewed publications. A research and his/her area of taxonomic expertise. Candidates lab, modest start-up funds, and teaching release time must have a PhD and post-doctoral experience, a record are available. We encourage the engagement of under- of peer-reviewed publication and scholarly accomplish- graduate students in research. ments, and evidence of f unding potential. Anticipated Applicants should submit a letter of application, along start date is in August 2009. Closing Date for Applica- with a complete curriculum vita, statement of teach- tions is November 17, 2008. ing philosophy, outline of research plan, and the names The University of Memphis is a comprehensive state of three references to: Biology Faculty Search Secre- university with an enrollment of approximately 21,000 tary, Department of Natural Sciences, University of students. The Department of Biology offers B.S., M.S., Michigan-Dearborn, 4901 Evergreen Rd., Dearborn, MI and Ph.D. degrees in Biology. There are approximately 48128. 30 faculty, 14 staff, 50 full-time graduate students, and Review of applications will begin November 15, 2008. over 750 majors in the department. The department administers the Meeman Biological Field Station, the The University of Michigan-Dearborn is dedicated to Ecological Research Center, and is closely affiliated the goal of building a culturally diverse and pluralistic with the Integrated Microscopy Center, the interdis- faculty committed to teaching and working in a multi- ciplinary Bioinformatics Program, and the W. Harry cultural environment and strongly encourages applica- Feinstone Center for Genomic Research. tions from minorities and women. For further informa- tion, please consult http://www.casl.umd.umich.edu/- Apply online at: https://workforum.memphis.edu/- naturalsciences/ Anne Danielson-Francois Assistant applicants/jsp/shared/frameset/Frameset.jsp?time=- Professor Division of Biology Department of Natural 1224101221859 Dr. Randall J. Bayer, Professor and Sciences University of Michigan-Dearborn 4901 Ever- Chair, Department of Biology, University of Memphis, green Road Dearborn, MI 48128-1491 3774 Walker Avenue, Memphis, TN 38152 phone: (901) 678-2596 email: [email protected] [email protected] [email protected] [email protected] [email protected]
UMinnesota EvolutionEcolBehav UMichiganDearborn EvolutionaryBiol The University of Minnesota has just opened two searches in the Department of Ecology, Evolution, and Behavior. One is for a Behaviorist the other for an Ecologist but in both cases we are looking for someone ASSISTANT PROFESSOR OF BIOLOGY UNIVER- who is working at the interface of Ecology, Evolution, SITY OF MICHIGAN - DEARBORN and Behavior. As such, I think they are appropriate for The Department of Natural Sciences invites applica- posting on EvolDir. tions for a new tenure track assistant professor position FACULTY POSITION IN in Biology beginning in Fall 2009. A relevant doctorate and a commitment to both teaching and research are ANIMAL BEHAVIOR required. Postdoctoral experience is desirable. Teach- The Department of Ecology, Evolution, and Behavior ing duties will include lecture and laboratory partici- at the University of Minnesota announces a search for pation in the Introductory Biology Team (Organismal a tenured or tenure-track faculty position. We seek an and Environmental Biology) and an upper division un- innovative, productive scientist conducting research in dergraduate course in the applicant?s specialty. The Behavior, preferably that interfaces with either Ecology upper level class may include topics in Cellular and or Evolutionary Biology. We are particularly interested 54 EvolDir November 1, 2008 in research that helps to integrate the department’s ex- research strengths. Appointment at a more senior level isting research strengths. Appointment at a more senior may be considered for candidates with records of out- level may be considered for candidates with records of standing accomplishment. outstanding accomplishment. This position provides opportunity for collaboration This position provides opportunity for collaboration within and beyond the EEB Department (Cedar Creek within and beyond the EEB Department, access to LTER, Itasca Biological Station and Laboratories, In- students in multiple graduate programs (e.g., Ecology, stitute on the Environment, Water Resources Center, Evolution and Behavior; Anthropology; Cognitive Sci- and the Bell Museum of Natural History), access to ences; Conservation Biology; Neuroscience; Psychol- students in multiple graduate programs (e.g., Ecology, ogy), access to extensive research facilities, and a com- Evolution and Behavior; Plant Biology; Conservation petitive start-up package. The campus is located in the Biology; Water Resources Science) and a competitive heart of the Minneapolis-Saint Paul metropolitan area, start-up package. The University of Minnesota-Twin which is rich in cultural and natural attractions. For Cities Campus has extensive research facilities (high more information about the position, the department, performance computing, genomics, field research sta- and related initiatives (we are also searching for an ecol- tions, greenhouses, museum collections, herbarium, and ogist working at the interface with either behavior or laboratories). The campus is located in the heart of evolutionary biology) see www.cbs.umn.edu/eeb/ . the Minneapolis-Saint Paul metropolitan area, which is rich in cultural and natural attractions. For more Duties and Responsibilities of the Position: The suc- cessful candidate will develop a strong, extramurally information about the position, the department, and funded integrative research program. He or she will related initiatives (we are also searching for an animal contribute to the undergraduate and graduate teaching behaviorist working at the interface with either Ecology missions of the College of Biological Sciences, advise or Evolutionary Biology) see www.cbs.umn.edu/eeb/ . Duties and Responsibilities of the Position: The suc- undergraduate, graduate, and postdoctoral students, cessful candidate will develop a strong, extramurally and participate in professional service. Initial teaching duties will include teaching an introductory Behavior funded integrative research program. He or she will course. contribute to the undergraduate and graduate teaching missions of the College of Biological Sciences, advise Qualifications: Ph.D. (or foreign equivalent) in biology undergraduate, graduate, and postdoctoral students, or a related discipline, strong publication record in dis- and participate in professional service. Initial teach- ciplines related to the position, potential to initiate and ing duties will include teaching an introductory Ecology sustain a strong research program in behavior, ability course. to communicate effectively, track record of interacting creatively and productively with other scientists, and / evidence of commitment to teaching. Interested applicants should apply online at employ- This message has been arbitrarily truncated at 5000 characters. ment.umn.edu. Search for requisition # 158791 and To read the entire message look it up at http://life.biology.- attach a letter of application, curriculum vitae, state- mcmaster.ca/˜brian/evoldir.html ments of research and teaching interests, and the names and addresses of three professional references. Review of applications will begin December 1, 2008. The approximate start date is September 1, 2009. Equal Opportunity Educator and Employer UMinnesota FACULTY POSITION IN ECOLOGY PlantComputationalBiol The Department of Ecology, Evolution, and Behavior at the University of Minnesota announces a search for a tenured or tenure-track faculty position. We seek an Assistant or Associate Professor, Computational Biol- innovative, productive scientist conducting theoretical ogy for Plant Breeding and Genetics, 9-month, tenured and/or empirical research in Ecology, preferably that or tenure-track position, Department of Agronomy and interfaces with the disciplines of either Behavior or Evo- Plant Genetics, University of Minnesota. For detailed lutionary Biology. We are particularly interested in re- description and application requirements see < http:/- search that helps to integrate the department’s existing /employment.umn.edu/ >http://employment.umn.edu and search for requisition #158294. Application re- November 1, 2008 EvolDir 55 views begin November 30, 2008. The University of Min- cipient of an active NSF ADVANCE award. nesota is an equal opportunity educator and employer. Lila Fishman, Ph.D. Assistant Professor Division of Bi- Thank you. ological Sciences University of Montana Missoula, MT Jeanne Davy Sr. Administrative Director Department 59812 of Agronomy and Plant Genetics University of Min- phone: (406) 243-5166 fax: (406) 243-4184 nesota 411 Borlaug Hall 1991 Upper Buford Circle St. lila.fi[email protected] Paul, MN 55108-6026 Ph - 612-625-1937 Fax - 612-625- lila.fi[email protected] lila.fi[email protected] 1268 Email - [email protected] Jeanne Davy
UNeuchatel Tech PlantEvolutionaryEcol UMontana PopulationGenetics
Research assistant / technician position - plant evolu- This ad should appear in Science shortly. tionary ecology EVOLUTIONARY/POPULATION GENETICIST A Swiss NSF funded research assistant/technician po- The program in Organismal Biology and Ecology sition is available from February 1st, 2009 for a highly organised and motivated technician or graduate with a (http://dbs.umt.edu/graduate/OBE/index.php) in the degree in a biological science subject. Division of Biological Sciences at the University of Mon- tana invites applications for a tenure-track position at You will work with and assist members of our lab the Assistant or Associate Professor level. We seek a on a variety of projects on the evolution and ecol- broadly trained evolutionary/population geneticist who ogy of reproductive traits in plants. Currently we uses molecular or genomic approaches to address funda- work mainly on Silene latifolia and its pollinator mental evolutionary questions in natural populations. Hadena bicruris. Research questions include investi- The ideal applicant will have post-doctoral research gating the effects of inbreeding on reproductive suc- experience, demonstrated evidence of teaching experi- cess, analysing pollen dispersal, as well as investigating ence and effectiveness, an established record of research the effects of interactions with pollinators for selection productivity, and demonstrated success or potential to on plant reproductive traits. See http://www.unil.ch/- develop a vigorous, extramurally funded research pro- dee/page7005 en.html for more detailed description of gram. Teaching responsibilities will include an under- some of our projects and http://www.unil.ch/dee/- graduate course in genetics and evolution, plus an ad- page10687.html for pubications. ditional undergraduate and graduate course to be de- The work involves using molecular methods and exper- termined. We particularly encourage candidates inter- imental approaches in the greenhouse, garden and field. ested in applying their research to conservation issues Lab work involves to genotype individuals using avail- and participating in the interdisciplinary Wildlife Biol- able microsatellite DNA loci and to assist group mem- ogy program (http://www.cfc.umt.edu/WBIO/). bers with plant culturing and phenotyping (e.g. mea- Applicants should send application materials (CV, suring vegetative and floral traits). statements of research and teaching interests, represen- Experience with molecular techniques (e.g. DNA ex- tative examples of publications, and names of three ref- traction, PCR, analysis of microsatellite DNA mark- erences) to: Doug Emlen, Chair, Evolutionary Genetics ers) and the ability to communicate in English with Search Committee, Division of Biological Sciences, Uni- an international team are requested. Experience with versity of Montana, Missoula, MT 59812; or by email plants and with microscopy techniques, as well as some to [email protected]. Review of ma- knowledge of French, would be an advantage but are terials will begin on December 1, 2008. not essential. You will be able to work as part of a The Division is interested in hiring a candidate who will team to develop new techniques, carry out experiments enhance the ethnic and gender diversity of its faculty. and collect the resulting data. You will also be able UM is an Equal Employment Opportunity/Affirmative to work independently to maintain the lab’s protocols, Action/ADA/Veterans Preference employer and the re- safety information and carry out pilot work. 56 EvolDir November 1, 2008
The position is for up to three years at 60% occupation the adjoining Indiana University School of Medicine- degree. South Bend. Applications will be accepted until De- cember 1, 2008, but review will commence immediately. To apply, please send a motivation letter, your CV, and the address of two potential referees to Prof. Giorgina Qualified individuals should send a cover letter, curricu- Bernasconi, Institute of Biology, Rue Emile Argand 11, lum vitae, research prospectus, summary of teaching in- University of Neuchatel, CH-2009 Neuchatel, Switzer- terests, and the names and addresses of three references to: Chair, Genomics Search Committee, Department of land, Fax: +41 32 718 30 01 (snail mail is preferred; Biological Sciences, University of Notre Dame, Notre applications by email must have the subject line “tech- nician position”). Dame, IN 46556-0369. For more information, email the search chair Dr. Michael Ferdig at [email protected]. Giorgina Bernasconi
Michael Ferdig
UNotreDame Genomics UNotreDame GenomicsFacilityManager *Assistant/Associate Professor of Genomics*. The Department of Biological Sciences at the University of Notre Dame invites applications at the Assis- tant/Associate professorial rank. We seek candidates holding the Ph.D. who use whole-genome, integrative *Research Assistant Professor.* The Eck Institute for approaches to study fundamental biological and evo- Global Health at the University of Notre Dame in- lutionary processes. The successful candidate will be expected to establish a vigorous externally funded re- vites applications for a Research Faculty member to search program that will compliment an active inter- manage a newly renovated and funded Genomics Core disciplinary research community with foci in the genet- Facility (GCF). We seek a highly motivated PhD sci- entist with an interest in guiding the development of ics, functional genomics, evolution, and ecology of para- the facility, conducting independent research, building sites and pathogens, their insect vectors, and vertebrate hosts. This individual will participate in the broad ini- collaborative relationships, and interfacing with a sis- tiatives of the Eck Institute for Global Health (http://- ter Bioinformatics Core Facility on campus. This is www.nd.edu/˜cghid < http://www.nd.edu/%7Ecghid a unique opportunity to develop an independent re- >) that include new Genomics and Bioinformatics Core search program while assisting in the universitys ag- Facilities. In addition this individual has the opportu- gressive move toward state-of-the-art genome science research capacity. This successful candidate will over- nity to oversee the Genomics Core, which would in- clude preferred access to core services. The successful see the core lab functions and technical staff, includ- candidate will teach one undergraduate course and de- ing Sanger and next gen sequencing platforms, geno- velop one graduate course in an area of interest. This typing and population genomic applications, and var- position is one of five driven by a global health initia- ious microarray platforms. This researcher will work closely with the faculty director of the GCF to develop tive that includes two additional current searches for services and pricing structures, to facilitate faculty re- a pathogen biologist and bioinformaticist and two fu- ture hires in epidemiology and disease ecology. The search, and to identify opportunities for sustainable fa- department houses a state-of-the-art imaging core, spe- cility growth. Salary and rank are competitive, com- cialized BSL-3 containment laboratories, insect rearing mensurate with experience and skills (starting range and research facilities, and an AAALAC accredited an- 50-70K, plus benefits). Significant space and resources are available, and include dedicated bench space and ac- imal facility. Information on departmental and other cess to equipment and competitive intramural research college faculty and facilities can be found at http:/- Position Require- /biology.nd.edu and http://science.nd.edu. Opportu- funding for independent research. nities also exist for collaboration with faculty at the ments : A Ph.D. in biology, bioinformatics or related adjoining Indiana University School of Medicine-South field. Some experience in uisng genomic tools, e.g. mi- Bend. Applications will be accepted until December 1, croarrays, high-throughput sequencing or genotyping is expected. Computer literacy, software familiarity 2008, but review will commence immediately. Qual- is required and any additional data analysis experi- ified individuals should send a cover letter, curricu- lum vitae, research prospectus, summary of teaching ence is a plus. To apply: please forward a cover let- interests, and the names and addresses of three ref- ter, CV/resume, statement of research interests (1-2 erences to: *Chair, Genomics Search Committee, De- pages) and names of 3 references to Michael Ferdig (fer- partment of Biological Sciences, University of Notre [email protected]
Applicants should systematically address the selection criteria in their application. For the Information Package click < http://- www.hr.unsw.edu.au/services/recruitment/jobs/- UNSW Sydney EvolutionLecturer /services/recruitment/jobs/info/pd31100808.pdf >HERE Enquiries may be directed to Associate Profes- sor Rob Brooks on +61 2 9385 2065 or email Lecturer in Evolution Faculty of Science SCHOOL OF [email protected] or Associate Professor David BIOLOGICAL, EARTH & ENVIRONMENTAL SCI- Cohen on telephone + 61 2 9385 8084 or email ENCES and EVOLUTION & ECOLOGY RESEARCH [email protected] . Further information on the CENTRE REF. 6226NET School, please visit: < http://www.bees.unsw.edu.au/ The School of Biological Earth and Environmental >http://www.bees.unsw.edu.au/ Sciences (BEES, www.bees.unsw.edu.au), in conjunc- Applications close : 01 December 2008 tion with the Evolution & Ecology Research Centre Evolution & Ecology Research Centre (E&ERC, www.eerc.unsw.edu.au) is seeking a Lecturer www.eerc.unsw.edu.au School of Biological, Earth in Evolution. BEES is a large and multi-disciplinary and Environmental Sciences The University of school incorporating a range of disciplines within the New South Wales Kensington, Sydney 2052 NSW, broad fields of Biology, Marine Science, Geography and Australia PH: +61-2-9385-2587 FAX: +61-2-9385- Geology. 1558 http://www.bees.unsw.edu.au/school/staff/- The appointment will enhance UNSW’s research profile brooks/brooksresearch.html [email protected] in Evolutionary Biology and Evolutionary Ecology and [email protected] the appointee will be a member of the UNSW Evolu- tion & Ecology Research Centre. The successful can- didate will be required to establish an internationally recognized, externally funded research program in Evo- lutionary Biology and to teach undergraduate courses UOklahoma EvoDevo in Evolution, Ecology, Genetics and/or Biology. Appli- cants should have a strong research record and should outline in their application their capacity to contribute The search that the advertisement is referring to is ac- to the existing research areas in the Centre and the tually very open, and I am hoping specifically to attract School. Candidate’s research should be focussed on Evo-Devo types by posting this on EvolDir. Therefore adaptive processes and the testing of theory, and should I would be grateful if you could post the ad. not be entirely descriptive. Candidates whose research involves the experimental study of adaptation and its Developmental Biologist The Department of Zoology, links to genetic, genomic, behavioural and/or physio- University of Oklahoma, invites applications for a logical processes may be preferred. tenure-track position at the Assistant Professor level, beginning August 2009. We seek an outstanding re- UNSW is one of the Group of Eight research intensive searcher and teacher with broad interests in develop- universities, and Evolution and Ecology are among our mental biology to join an integrative zoology depart- recognized research strengths. ment. Preference will be given to applicants whose This is a continuing appointment. North American ap- research and teaching interests complement our exist- plicants should note this is equivalent to a tenure-track ing strengths in development, neurobiology, cell sig- assistant professor position. naling, behavior, ecology and evolutionary biology. We expect the applicant to establish an externally- Salary range for Lecturer A$73,573 - A$86,734 per year funded research program and contribute to undergrad- (plus 17% employer superannuation and leave loading) uate and graduate teaching, including a core under- Candidates holding existing ARC/NHMRC fellowships graduate course in developmental biology each year. and/or research grants are encouraged to apply as In alternate semesters, the candidate will have the op- well as those who are able to form synergistic inter- portunity to develop a specialty course(s) in her/his actions with existing researchers and groups within the area of interest. Our successful candidate will have a E&ERC. Women and people from equity groups are PhD and demonstrated ability to conduct significant also encouraged to apply. independent research as judged by publications. Send November 1, 2008 EvolDir 59 curriculum vitae, reprints/preprints, and research and and graduate courses. teaching statements, and arrange to have three letters *PLANT BIOLOGIST (ASSISTANT PROFESSOR* of recommendation sent to Chair, Developmental Bi- level). We welcome candidates with research interests ology Search Committee, Department of Zoology, The in any aspect of plant biology (including algae), from University of Oklahoma, 730 Van Vleet Oval, Norman, genes to ecosystems; especially those employing genetic OK, 73019, or as PDFs to [email protected]. Fur- tools. ther information about the Department of Zoology is available at zoology.ou.edu. Screening of candidates *SPATIAL ANALYSIS/ECOSYSTEMS (ASSIS- will begin December 15, 2008 and will continue until TANT/ASSOCIATE PROFESSOR* level). We the position is filled. welcome candidates who focus on spatial analysis of ecological processes. Candidates already in tenure- The University of Oklahoma is an Equal Opportu- track or tenured positions may be considered for the nity/Affirmative Action Employer. Women and minor- rank of Associate Professor. ity candidates are encouraged to apply. Please submit the following: cover letter, curriculum Dr. Ingo Schlupp Department of Zoology Univer- vitae, statement of research and teaching interests, and sity of Oklahoma 730 Van Vleet Oval Norman, OK three representative publications to: *Mary Parrish, 73019 USA Office: 001 405-325-4908 FAX: 001 405-325- Department of Biology, Division of Integrative Biology, http://faculty-staff.ou.edu/S/- 6202 [email protected] University of South Florida, 4202 East Fowler Avenue, Ingo.B.Schlupp-1/ http://www.ou.edu/darwin/Site/- SCA110, Tampa, FL 33620.* Home.html and Section of Integrative Biology #C0930 University of Texas Austin, TX 78712 USA Also have three letters of recommendation in [email protected] PDF sent to *e-mail: [email protected]
Science Foundation, the U.S. Department of Homeland ical researchers. UTK has an active interdisciplinary Security and the U.S. Department of Agriculture, the research group in epidemiology and offers an exciting University of Tennessee, Knoxville (UTK) over the next environment for collaborative research with colleagues three years is recruiting at least six new faculty mem- from departments in the Colleges of Arts and Sciences, bers whose research interests are at the interface of Agricultural Sciences and Natural Resources, and Vet- mathematics/computation and biology. For all posi- erinary Medicine. tions, evidence of outstanding research abilities and ex- (iii) We seek outstanding colleagues for four additional perience in collaborative, interdisciplinary research is tenure-track positions (level appropriate to experience) expected. These faculty positions include: with strong records of research in fields at the inter- (i) The Department of Ecology and Evolutionary Bi- face of mathematics and biology that expand upon the ology at UTK seeks to fill a tenure-track position in current outstanding programs in mathematical ecology mathematical/ computational ecology and/or evolution and evolutionary biology at UTK. A Ph.D. is required at the assistant professor level, to start August 1, 2009. and post-doctoral experience is preferred. A commit- A Ph.D. is required and postdoctoral experience is pre- ment to excellence in teaching at both undergraduate ferred. A commitment to excellence in undergradu- and graduate levels is expected. Teaching responsibil- ate and graduate teaching is expected. Teaching re- ities will include graduate-level courses in the area of sponsibilities include graduate-level courses appropri- the applicant that would be appropriate for a diverse ate for mathematics and biology students. Attractive group of biology and mathematics students. Biological research areas include complex ecological or evolution- areas of interest include, but are not limited to, biolog- ary systems, and integrative analysis at multiple spa- ical networks, cell biology, host pathogen- environment tial/temporal scales. We seek a creative colleague who systems, and immunology. has an innovative research program using mathemat- The home departments for the faculty positions un- ical and/or computational approaches to address fun- der (ii) and (iii) will be chosen as appropriate to the damental questions in ecology or evolution. Interest expertise of the individual, but could include the de- in collaborating with empiricists is a plus. UTK has partments of Mathematics; Ecology and Evolutionary outstanding programs in mathematical/computational Biology; Biochemistry, Cellular and Molecular Biology; biology and offers an exciting environment for collabo- Microbiology; Forestry, Wildlife and Fisheries; the Col- rative research with colleagues from other departments lege of Veterinary Medicine; or various other depart- and Oak Ridge National Laboratory. ments in the College of Agricultural Sciences and Nat- For information about the department visit http://- ural Resources and the College of Engineering. Appli- eeb.bio.utk.edu .Candidates should apply to Dr. Louis cants with extensive research experience and an inter- J. Gross, Department of Ecology and Evolutionary Bi- nationally recognized record of accomplishment may be ology, University of Tennessee, Knoxville, TN 37996- considered for a Governor?s Chair appointment (details 1610. Applicants should send a CV, statements of re- at http://www.tennessee.edu/governorschairs/). search and teaching goals, and up to 5 reprints, and / should arrange for three reference letters to be sub- mitted. Electronic applications should be sent to Ms. Cheryl Lynn via e-mail: [email protected]. Applications This message has been arbitrarily truncated at 5000 characters. will be reviewed beginning November 3, 2008. To read the entire message look it up at http://life.biology.- mcmaster.ca/˜brian/evoldir.html (ii) We seek an outstanding researcher for a tenure- track position (level appropriate to experience) with a strong record of research in the mathematics and mod- eling of animal infectious diseases, to start August 1, 2009. A Ph.D. and/or D.V.M. is required and post- doctoral experience is preferred. A commitment to ex- cellence in teaching is expected. Teaching responsibili- UTrier EvolutionaryBiology ties will include graduate-level courses appropriate for a diverse group of biology, mathematics, wildlife and veterinary students. We seek a creative colleague who Under the auspices of the ’Zukunftsinitiative has an innovative research program using mathemati- Rheinland-Pfalz [Rheinland-Pfalz Future Initia- cal and/or computational approaches to address funda- tive]’, subject to final approval, a number of posts are mental questions in infectious disease ecology or evolu- available at Fachbereich VI [Department VI] of the tion, as well as interest in collaborations with empir- University of Trier (Geography and the Geosciences) November 1, 2008 EvolDir 61 in a research association in natural sciences and ju- some experience with LINUX), good understanding of risprudence. The posts are open to scientific assistants processes, a command of statistics, a capacity for work- of either sex (E13 and E13/2) as from 01.01.2009, and ing independently and for working together as part appointments will be made for a period of 3 years. of a team, a talent for interdisciplinary cooperation. A number of sub-projects are to be set up in the natural Also desirable or advantageous would be a knowledge sciences with a view to studying the effects of expected of boundary layer meteorology and SVAT modelling. climatic changes on the distribution of plant and animal Sub-projects 3: Dispersal abilities of butterflies and species. Here the main emphasis will be on the ques- grasshoppers, in dependence on land use (doctoral tion to what extent these changes have implications for posts, E13 50%) and Sub-project 4: Propagation possi- the planning of conservation areas on the national or bilities of earthworms, in dependence on land use (doc- European level. This will involve the use and further toral posts, E13 50%) Both positions will involve the development of existing predictive tools for modelling selection and sampling of suitable geographical areas species distribution and population processes. Taking of study, the execution of molecular-genetic laboratory regional climate simulations into account, both mod- analysis and ecological work in the field on the disper- elling approaches are to be linked to selected regions. sal ecology of selected species. Assistance in connection In addition, forecasts are to be made of the effects of with ecological field work is possible through supervis- the expected change in land use resulting from the ex- ing the theses of diploma, BA and/or MA students; tended cultivation of energy plants on the propagation there will be the possibility of receiving intensive sup- of variously mobile animal species. For estimating the port in connection with the publication of the results at exchange of individuals between populations, both di- international level. Requirements: a completed college rect (marking experiments) and indirect methods (ge- or university degree in the natural sciences, preferably netic marker systems, especially microsatellites) will be with a main focus on biology and/or the geosciences. used. With the help of GIS, species specific dispersal Applicants are expected to have knowledge and prac- parameters are to be used to predict the changes in the tical experience of the use of molecular-biological lab- connectivity of the landscape for the species in question oratory (PCR, microsatellite analysis) and analytical under different scenarios of agricultural development. procedures (e.g. AMOVA, STRUCTURE), as well as We are therefore looking for committed employees in experience of GIS. Knowledge of species would be an connection with the following sub-projects: advantage, but is not absolutely essential. Sub-project 1: Modelling distribution area changes for The place of work will be Trier. Seriously handicapped selected plant and animal species on different spatial persons showing the right qualifications will be given scales (postdoctoral post, E13 100%) This position in- preferential treatment. volves the execution of the modelling of distribution Please send your application, with the usual support- areas and population dynamics described above, super- ing documents, by 15 October 2008 to: Universit¨at vising the scientific theses of students associated to the Trier Fachbereich VI - Geographie/Geowissenschaften project at diploma, bachelor and/or master level, as Prof. Dr. Michael Veith Biogeographie Am Wis- well as coordinating the project association itself. Re- senschaftspark 25-27, D-54286 Trier, GERMANY quirements: a completed doctorate in the field of the For more detailed information please contact: Sub- modelling of population developments, preferably with projects 1 and 3: a main focus on biology. Involvement in the prepara- tion of reports and busy publication activities are also / expected. This message has been arbitrarily truncated at 5000 characters. Subproject 2: Regional climate modelling (doctorate To read the entire message look it up at http://life.biology.- position, E13 50%) The position involves the execution mcmaster.ca/˜brian/evoldir.html of regional climate simulations for Rheinland-Pfalz us- ing the COSMO-CLM model for climate scenarios, the processing and evaluation of the model data, provision of data for other subprojects and the coupling of popu- lation models with the regional climate model. Require- ments: A good to excellent degree (diploma or MA) in UTubingen ComparativeZoology meteorology or the environmental sciences, good pre- sentation skills, modelling experience using meteorolog- ical models, knowledge of programming (FORTRAN, The Faculty of Biology of the Eberhard-Karls- 62 EvolDir November 1, 2008
University T¨ubingen invites applications for a Full pro- Wisconsin-Milwaukee invites applicants for a faculty fessor (W3) in “Comparative Zoology” starting April position at the assistant (tenure-track) or associate pro- 1, 2009. fessor level. The successful applicant will pursue an internationally We are seeking outstanding candidates with a Ph.D. high-ranking research agenda in the field of comparative in biology or a related area with postdoctoral research vertebrate zoology. The applicant’s research should fo- experience. Applicants whose work has an aquatic fo- cus on the comparative and functional analysis of inter- cus, and with expertise in biometrics, bioinformatics, specific and/or intraspecific evolutionary adaptations. genomics, computational biology, ecological modeling, Research topics may include functional morphological systems biology, or biological aspects of climate mod- and ecomorphological adaptations, biodiversity, biosys- eling, are preferred. The successful candidate will be tematics, and/or animal ecology. Teaching obligations expected to develop a vigorous, externally-funded re- cover all aspects of zoology, in particular vertebrate search program, take an active role in directing un- evolution. Close collaborations with the interfacultary dergraduate and graduate education, and contribute to teaching and research platform “Evolution and Ecology teaching in biomathematics and core biology courses. Forum T¨ubingen” are expected. This position complements a second position A formal requirement for appointment is a “Habilita- in Mathematical Sciences (www.jobs.uwm.edu/- tion” or an equivalent level of scientific and academic applicants/Central?quickFindP619) and is part of a teaching qualifications. new interdisciplinary research initiative in Aquatic The position is a full professorship in the context of Biomathematics, involving our two departments and the BMBF supported “200-Professorinnen-Programm” the UWM Great Lakes WATER Institute. Poten- tial applicants are encouraged to visit our websites: to increase the number of female professorships at Ger- www.uwm.edu/Dept/Biology, www.math.uwm.edu, man universities. This program encourages in partic- ular applications by female scientists. Disabled appli- and www.glwi.uwm.edu. cants with equal qualification will be given preferential To apply, please go to www.jobs.uwm.edu/applicants/- treatment. Central?quickFindP742 .A completed application should include: cover letter, curriculum vita, state- Please send your application (including CV, copies of ment of research goals, statement of teaching interests, certificates, list of publications, research statement, grants awarded, teaching records and plans, copies of and letters of professional reference. Applicants should relevant certificates) by November 28, 2008 to Dekanat arrange to have 3 letters of reference sent as pdf attach- fuer Biologie der Universitaet Tuebingen, Auf der Mor- ments to the departmental chair ([email protected]) or mailed to Biomathematics Search at the following genstelle 28, D-72076 Tuebingen, Germany address: Department of Biological Sciences, University Nico K. Michiels (Prof.) Animal Evolutionary Ecol- of Wisconsin-Milwaukee, P.O. Box 413, Milwaukee, ogy Zoological Institute, Faculty of Biology University WI 53201. Tuebingen Auf der Morgenstelle 28 E 72076 Tuebingen Screening of candidates will begin November 19, 2008 Germany and continue until the positions are filled. Appoint- Tel. +49 7071 29 74649 Mobile +49 170 4758003 Fax ments begin August 2009. UWM is an Equal Opportu- +49 7071 29 5634 nity/Affirmative Action Employer. [email protected] http://www.uni- Best Regards, Michael. tuebingen.de/evoeco http://www.eve.uni-tuebingen.de Michael J. Carvan III, Ph.D. Phone: (414) 382-1706 “Nico Michiels (T¨u)”
He to whom this emotion is a stranger, who can no Seth Bordenstein Assistant Professor Department of Bi- longer pause to wonder and stand rapt in awe, is as ological Sciences Vanderbilt University VU Station B, good as dead; his eyes are closed. - Albert Einstein Box 35-1634 Nashville, TN 37235 “Michael J. Carvan”
VanderbiltU ResearchTechnician Genomics VirginiaCommonwealthU Research Assistant at Vanderbilt University, Depart- PlantMolecularSystematics ment of Biological Sciences **** The Bordenstein lab at Vandberbilt University seeks a full time research technician. The lab studies animal- Virginia Commonwealth University microbe interactions and the patterns that character- PLANT MOLECULAR SYSTEMATIST ize the evolution and function of bacteriophages that inhabit bacterial endosymbionts of invertebrates (Wol- The Department of Biology invites applications for a bahcia). This work will involve a combination of molec- faculty position in the area of molecular systematics. Primary teaching responsibilities will include an under- ular and computational biology to achieve enrichment, graduate and a graduate plant related course. This is genome sequencing, and comparative sequence analy- ses of viruses. Familiarity with cloning and sequencing, a nine-month, tenure-track position at the rank of As- molecular biology of viruses, computational skills, Gen- sistant Professor. Anticipated start date is August 16, Bank, Linux/Unix, or genome assembly tools should be 2009, pending funding. The successful applicant will be highlighted in your cover letter. Wolbachia are an excel- expected to develop a productive, externally funded re- search program and direct graduate students through lent bacterial system to study these biological phenom- the Ph.D. level. Postdoctoral experience is expected ena. The spread of this germline bacterium through the majority of animal species over the last 100 mil- and demonstrated evidence of excellence in scholarship lion years represents one of life’s great pandemics. This and teaching is required. Competitive start-up funds position will involve interconnections among computa- and excellent core facilities are available. tional biology, microbiology, genomics, evolution, and Virginia Commonwealth University has an enrollment entomology. of 32,000 students, including over 1,500 undergraduate Salary and job level is commensurate with educa- and approximately 100 graduate students in Biology. tion and prior experience. The position includes The Department of Biology (www.has.vcu.edu/bio) has benefits and coauthorship. Please include a cover 32 faculty members with diverse research interests. Ad- ditional research opportunities are available through letter with anticipated start date, resume, and the Center for Environmental Studies and at the Rice minimum of three references in your application referring to Requisition Number JAM70015 at https:/- Center, VCU.s nearby field station on the James River. /www3.recruitingcenter.net/clients/vanderbilt/- Submit vitae, statements of research and teaching inter- publicjobs/canviewjobs.cfm . Questions can be ests, and three letters of reference by December 15, 2008 addressed to [email protected] and ad- to: Stephanie Millican, Department of Biology, Virginia Commonwealth University, Richmond, VA 23284-2012. ditional information about the Bordenstein lab can be found at: http://bordensteinlab.vanderbilt.edu. Virginia Commonwealth University is an equal oppor- Vanderbilt is located in the academic and cultural tunity/affirmative action employer. Women, minorities center of Nashville, TN. and persons with disabilities are encouraged to apply. – Rodney Dyer
Other
28s secondarys tructure phylogenetics ...... 64 Phist Fst comparisons ...... 73 Agarose gel stains answers ...... 64 Reducing microsatellite stutter paper ...... 73 Arginine repressor protein ...... 65 RoyalSocietyIssue EvolutionOnPacificIslands ...... 73 Bionumbers database ...... 65 Sitophilus and Oryzaephilus samples ...... 74 BioTek Precision XS Micropipettor ...... 66 Software ATV ...... 74 Calculating relatedness ...... 66 Software Bio++ ...... 74 Closing Kewalo Marine lab ...... 66 Software DAMBE linux ...... 75 Corrections for GeneticsOfPopulations ...... 67 Software DAMBE on LINUX ...... 75 Diallelic data program ...... 67 Software Fregene ...... 76 DNA Fragment Analysis Software ...... 67 Software Generalized-Treefinder ...... 76 Evanno Method Structure ...... 68 Software SumTrees ...... 77 Fish samples ...... 68 Solicit critics and comments ...... 77 FrozenSection in situ ...... 68 SouthAfrica volunteers EvolutionGroupLivingMam- Gel documentation website ...... 68 mals ...... 77 Mac DNAFragmentAnalysis Software ...... 69 Spain FieldAssist SocialInsects ...... 78 Microsatelliete isolation ...... 69 TajimaD analysis ...... 79 Microsatellite Libraries ...... 70 Tajima’sD analysis ...... 79 Microsat hyrid tree question ...... 70 Teaching animations simulations ...... 79 Natl Inst for Mathematical and Biological Synthesis 70 Teaching animations simulations answers ...... 80 NESCent Call for Proposals ...... 71 Triploid data analysis ...... 81 Netherlands Volunteer BirdBanders ...... 71 Triploid data analysis answers ...... 81 New Journal MitochondrialDNA ...... 72 NorthAmerican Jaera albifron ssamples ...... 72
Hello EvolDir community: A little while back I posted a message asking for sug- 28s secondarys tructure gestions for ethidium bromide alternatives. Thank you phylogenetics very much to all who responded! Below you can find a summary of responses, followed by my original post. It seems that most people still use ethidium bromide, Hello everyone, I am looking for a software to predict though there are a few alternatives. SYBR Safe (In- the secondary structure of lsu rDNA and then use it for vitrogen) and GelRed (Biotium) were by far the alter- phylogenetic analysis. or anything similar is acceptable. natives recommended most often, though there are of Thank you course some concerns associated with each. Potential concerns include: Aˆ 1) Stability. SYBRSafe is light sen- – Stefanos Martimianakis PhD Student University of sitive and degrades rapidly, so you need to add it fresh Patras, Greece Dep. of Biology Sect. of Genetics Email: each time. SYBR Green and SYBR Gold are more sen- [email protected] sitive, but potentially more hazardous. GelRed can be
BioNumbers (bioNumbers.org) enables you to find in one minute any common biological number that can be important for your research, such as the rate of transla- tion of the ribosome or the number of bacteria in your gut. You will find full reference, comments and related Calculating relatedness numbers that are useful. A review can be found at http://openwetware.org/- wiki/BioNumbers A review on mybiotechlifenet: Hello, http://my.biotechlife.net/2007/08/30/bionumbers- I am looking for advice on calculating relatedness the-database-of-useful-biological-numbers/ Some among individuals using microsatellite markers. The interesting bionumbers: individuals are derived from 3 populations and I do not Tables describing Developmental stages including ap- have information on the background allele frequencies proximate age and size in Human, Pig, Rat, Fish, in the populations. Advice on methods and software chicken, frog (to find these simply enter in the ’find packages would be greatly appreciated terms’ box 102123, 102199, 102197, 102201, 102200, Thanks! 102124 respectively). Michelle L. Steinauer Research Assistant Professor Col- Mutation rate per genome per replication, Hu- lege of Veterinary Medicine Department of Biomedical man Homo sapiens, 0.16 mutation/genome/replication Sciences Oregon State University 105 Magruder Hall (100417) Corvallis, OR 97331 Phone: 505-977-6268 Fax: 541- Mutation rate per base pair per replication, Hu- 737-2730 [email protected] man Homo sapiens, 5E-11, mutation/bp/replication “Steinauer, Michelle”
Hi all, The University of Hawaii is seriously considering closing one of it’s two marine labs, Kewalo Marine Lab, where BioTek Precision XS Micropipettor Mark Martindale and Elaine Seaver work. Marine Labs are like evolutionary innovations, once you lose them it may take a very long time to get them back. You can add to the blog on the news story at this site: http://www.starbulletin.com/news/hawaiinews/- 20080923 Kewalo labs proposed closure protested.html I’ve sent a message to Dr. David McClain, the Pres- Hi all- ident of the University of Hawaii System and suggest I am wondering if anyone that uses this forum has a that you send one too, if you are concerned about this BioTek Precision XS Micropipettor in their lab. If unique marine lab being closed down. so, for what applications do you use it, what kind [email protected] of volumes are typically exchanged, and how satisi- fied are you as far as the instrument meeting your Such a message might include the following comments: needs/expectations? In particular, our lab has just pur- Dear Dr. McClain, chased one and we are interested in using it to set up I am writing to express my dismay over the recent de- PCRs, combine samples for multiplexing, clean samples cision by Gary Ostrander, vice chancellor for research for sequencing, etc. I would like to get in contact with and graduate education and interim director of the Pa- somebody who uses it for these and other functions. cific Biosciences Research Center to close Kewalo Ma- Joel Anderson [email protected] rine Lab. November 1, 2008 EvolDir 67 http://www.starbulletin.com/news/hawaiinews/- analyze genentic differences among populations with di- 20080923 Kewalo labs proposed closure protested.html allelic markers (microsat data or allozyme data) com- This move appears to be uninformed, considering the bined with morphometrical data. Best regards Gabi importance of the world’s oceans to humans, the vast Gerlach potential of the marine environment in biological stud- Gabriele Gerlach, Prof. Dr. ies and current ecological problems that threaten the unprecedented biodiversity and untapped knowledge AG Biodiversit¨atund Evolution der Tiere Institut f¨ur in the world’s oceans. Marine Labs are unique places Biologie und Umweltwissenschaften Carl von Ossietzky where most of the world’s Marine Biological Research Universit¨atOldenburg 26111 Oldenburg Tel. 0441 798 is conducted. 3986 Fac 0441 798 3937 Email: gabriele.gerlach@uni- oldenburg.de At Kewalo Marine Lab, scientific advances in genomics and marine exploration are applied in novel and cre- gabriele gerlach
Evanno Method Structure FrozenSection in situ
I have a question regarding the delta k method of in- ferring the most likely k value in STRUCTURE. This method is discussed in the paper Evanno G, S Regnaut, J Goudet 2005. Detecting the number of clusters of in- Dear Evoldir members, I am working on Chilopoda dividuals using the software STRUCTURE: a simula- and I am looking for a in situ hybridization protocol tion study. Mol Ecol 14: 2611-2620. Obviously, there on frozen section in ARTHROPODA. Can anyone help is no way to validate k =1. But since k = 2 is based me? on prior values (in part) generated for k =1, is it also invalid? The reason I ask is that I often get the highest Thanks for any input! delta k value for k = 2, which for my pops makes lit- Francesca Bortolin tle sense. Intuitively, k = 2 would seem to not be able – to be validated by Evanno et al.’s method, but I need some reinforcement for this assessment! Any input will Francesca Bortolin , PhD Student Department of Bi- be appreciated. ology University of Padova Via U. Bassi 58/B I- 35131 Padova, ITALY Ph. +390498276238 e-mail: Thanks, Alan Meerow [email protected] PLEASE NOTE THE NEW PHONE NUMBER! francesca bortolin
Fish samples My website for constructing a safe, inexpensive gel doc- umentation system was recently referred to in this fo- rum with the following link: Hi, http://users.iab.uaf.edu/ ˜ kris hundertmark/Lab/- We are looking for tissue or genomic DNA from the Geldoc.html Unfortunately, I had recently updated following species: the site and changed the name of the web page slightly, which likely made accessing the page impossible. I Coregonus species Prosopium whitefish species grayling have fixed this problem so that link should work now. species rainbow smelt or other smelt species Salaman- Sorry for the inconvenience. derfish New Zealand smelt Kris If you can help us, that would be greatly appreciated. The project involves the examination of gene duplica- – Kris Hundertmark Assistant Professor of Wildlife tion and divergence of interacting partners in a muscle Ecology Institute of Arctic Biology and De- regulatory pathway in salmoniformes. Thank you. partment of Biology and Wildlife University of Alaska Fairbanks PO Box 757000 Fairbanks, AK David Liberles Department of Molecular Biology Uni- 99775 907.474.7159 907.474.6967 (fax) http://- versity of Wyoming [email protected] www.iab.uaf.edu/ ˜ kris hundertmark/ ff[email protected] “David A. Liberles”
and straightforward... Anyway, for the time being, I’m afraid there is no other solution except using Parallels, Q Emulator, Bootcamp or other application of your preference to run Windows Mac DNAFragmentAnalysis programmes on Macs... Software I hope that this might just be the kind of incentive that someone really creative and computer-crafty would need to solve this issue, and make the lives of so many Dear all, researchers easier. thanks to everybody who tried to help me. Unfortu- Best luck to all your endeavours! nately all the software you suggested (such as 4Peaks, Lic´ınia Clustal or Geneious), although undoubtedly useful, are – Lic´ınia Gouveia Assistant Research Technician Ma- not adequate for my needs: what I need is a software rEE - Marine Ecology & Evolution Research Group that I can use to score size differences between alleles, CCMar - Centro de Ciˆencias do Mar do Algarve Univer- as the ones I get when using microsatellite markers, for sidade do Algarve Campus de Gambelas Faro, 8000-119 example. That’s why I have .fsa files, because those PORTUGAL are the output files produced by ABi 3130xl sequencer when it runs different genotypes. The only software Emails: [email protected] [email protected] applications I know that do this are produced by Ap- [email protected] plied Biosystems itself (Genotyper, GeneScan and Gen- Instant messenger contacts: liciniagouveia (Skype) eMapper), curiously specific to each series of sequencers [email protected] (MSN Messenger) produced, so if each has a different fragment analysis output file, they can’t be directly used by other software Mobile phone: +351 96 635 35 75 (for example, .fsa files are supported by GeneMapper http://www.linkedin.com/in/liciniagouveia http://- but can’t be used either in Genotyper or GeneScan), ccmar.ualg.pt/maree “I’m smart enough to know that and none of them runs on Mac OS X, although GeneS- I’m dumb.” - Richard Phillips Feynman (1918-1988), can was made to run on Mac OS 8. 1965 Nobel Physics Prize There is also MegaBACE Genetic and Fragment Pro- [email protected] filer from GE Healthcare Life Sciences, but it’s only compatible with Windows 2000 and Windows XP. Other than these, there’s a software called GeneMarker (produced by a company called Softgenetics) that per- forms the same, but again it does not run on Mac OS Microsatelliete isolation X. Regrettably, these applications are also proprietary, so you always end up paying big bucks to have them. Un- less, as someone pointed out, you don’t mind not using I’m trying to find microsatellite markers for use in relat- the full features of GeneMarker and you can get away edness within a population of golden-crowned sparrows with a free demo that can be download from Softgenet- (Zonotrichia atricapilla). I can see two options - finding ics page. Not using the full features means not being heterospecific markers that work or generating species able to save the processed .fsa files, but still saving the specific markers. The former I can do myself - however allele size scoring in an Excel sheet. Then again, you if anyone knows of markers that work in this species or can still only run it on Windows. that they think are particularly likely to work in this Finally, there is a software called STRand, that’s devel- species, I’d love that information. The second task - species specific markers (i.e. creating a library?) is be- oped and used at at the University of California, Davis’ yond the skills I currently have and probably would take Veterinary Genetics Lab, and you can score microsatel- more time than I can dedicate to the task. As such, I lite alleles with it, but once again, it only runs natively on Windows. Besides, I’ve tried it before and, without am wondering if anyone has information on commer- questioning it’s usefulness, it has a very complicated, cial services that might do this for me (and maybe the unintuitive and unfriendly interface. And we all know cost). how Mac users dislike software that’s not spontaneous Thank you, 70 EvolDir November 1, 2008
Alexis Alexis Chaine Post-Doctoral Researcher Station d’Ecologie Exp´erimentale du CNRS (USR 2936) 09200 Moulis France
the technique of using greatly abbreviated PCR times (e.g. 2/2/8 s) at each step to decrease microsatellite stutter. This technique was described in the response of Andrew DeWoody in 2006 (see below for quoted re- Phist Fst comparisons sponse) to an EvolDir member that asked about how to decrease stutter. I do not know the complete ref- erence of this paper, and as Andrew read the paper a while ago he is also unsure of the reference though he Hi. thinks the paper might be about hymenopterans. Does I’m looking for a program that performs the comparison anybody know the full reference of this paper or (pref- that Spagedi (Hardy and Vekemans, 2002) does using erentially) can they email the paper as an attachment microsatellite data, by which it tests if the phylogenetic to [email protected]? information derived from allele length contributes to Many thanks and kind regards, the measures of population differentiation, i.e. if Rst is Catherine larger than Fst (more explanation below). I would like to perform this test using mitochondrial DNA sequence EvolDir response: “You might try greatly abbreviated data to test is PhiST is larger than Fst in my dataset. times at each step in PCR (e.g., 2 sec denaturation, Does anyone know of a program that does this? 2 sec annealing, 8 sec extension). The original paper describing this was published in Biotechniques about 6 Thanks in advance, Gisselle – PhD student Molec- or 7 years ago; see also the attached reprint. [We had ular Ecology Reseach Group School of Biologi- cited the Biotechniques paper in the bass reprint, but cal Sciences Monash University - Clayton, Aus- the citation was ultimately cut due to strict page limits tralia email: [email protected] or gis- in PRS.] In my experience, the approach either works selle [email protected] very well or fails completely (on a locus by locus basis). – Extract from Hardy et al 2003 “Microsatellite Allele If you get amplifications, the stutter is usually greatly Sizes: A Simple Test to Assess Their Significance on reduced. DeWoody et al. (2000) Proc. R. Soc. Lond. Genetic Differentiation” B 267:2431-2437.” The principle of the test is based on obtaining a dis- – Catherine Attard (PhD candidate) Molecular Ecology tribution of a statistic under the null hypothesis that Lab, Department of Biological Sciences Marine Mam- differences in allele sizes do not contribut to population mal Research Group, Graduate School of the Environ- differentiation. Therefore, we use a randomization pro- ment Macquarie University Sydney, NSW 2109 Aus- cedure whereby the different allele sizes observed at a tralia locus for a given data set ar randomly permuted among [email protected] allelic states. ($B!D(B) Under the null hypothesis, the randomization procedure should not affect the expecta- tion of a measure of differentiation such as Rst. On the contrary, if allele sizes contribute to genetic differenti- ation, the Rst computed after allele size permutation would depend solely on allele identity/nonidentity and RoyalSocietyIssue hence have a smaller expectation than the value com- EvolutionOnPacificIslands puted before randomization. gisselle [email protected] The Royal Society has just published an issue of Philo- sophical Transactions of the Royal Society B: Biological Sciences entitled: Evolution on Pacific islands: Dar- win’s legacy, organised and edited by Steven A Trewick and Robert H Cowie. I would very much like to pro- Reducing microsatellite stutter mote this issue to your readers at the specially reduced paper rate of £47.50 as we know that it will be of immensem interest to them. Please could you let me know if this might be possible Hello EvolDir members, I’m trying to find (with no and note that the link that you should quote is http://- luck) the original Biotechniques paper which describes publishing.royalsociety.org/islands which will give fur- 74 EvolDir November 1, 2008 ther information about the issue. However please can tree from ToL... enter 2461 for Cnidarians, for exam- you be sure to say that the specially discounted price ple) + Dynamic hiding of text (depending on zoom is only available by contacting Debbie Vaughan at the level) + Support for the ToL Response XML Format Royal Society direct ( [email protected] + PNG, JPG, and GIF image output + ATVe: em-
Best Xuhua pariello R, Whittaker JC, De Iorio M, Balding DJ (2007) Sequence-level population simulations over large Dr. Xuhua Xia CAREG and Biology Department genomic regions. Genetics 177: 1725-1731, 2007, doi: University of Ottawa 30 Marie Curie, P.O. Box 450, Station A Ottawa, Ontario Canada K1N 6N5 Tel: 10.1534/genetics.106.069088 (613) 562-5800 ext 6886 Fax: (613) 562-5486 URL: e-mail: [email protected] http://dambe.bio.uottawa.ca [email protected] [email protected]
Software Generalized-Treefinder Software Fregene
FREGENE is a C++ program that simulates sequence- One more unpaid TREEFINDER version is online at: like data over large genomic regions in large diploid populations. www.treefinder.de TREEFINDER is a software to compute phylogenetic trees from molecular sequences. Unlike coalescent-based simulation tools, FREGENE works forwards-in-time which allows a wide range of de- New features are: mographic and selection scenarios to be implemented. - generalized partition model, which - includes both Many such models are already incorporated into FRE- proportional and separate model - resampling of cal- GENE, and since it is open source users can modify or ibration times - improved TL manual extend these. Coalescent methods have difficulty incor- porating large amounts of gene conversion or crossover, The generalized partition model covers the assumptions whereas these pose no particular problem for FRE- of both proportional and separate edge lengths among the data partitions, and still a few possibilities more. GENE. FREGENE offers a flexible model for recom- Partitions can be now organized in partition groups as- bination hotspots, and can readily simulate regions up to tens of Mb on a standard desktop computer. suming a separate set of edge lengths for each partition group, but assuming proportional edge lengths within The principle limitation of forward-in-time algorithms a partition group. In a multi-gene framework, for ex- is computational, since the entire population must be ample, one can have a separate set of edge lengths for tracked through time, not only the chromosomes that every gene, and also have separate partition rates for are ancestral to the observed sample. FREGENE im- the codon positions. plements many features to enhance computational ef- ficiency, and includes a rescaling option that greatly Of course, the hypothesis testing and everything has reduces computation time at the cost of some approxi- been updated to work with the generalized partition model. The groupwise edge lengths can be extracted mation. from the reports and saved to a file. The program SAMPLE, that comes with FREGENE, generates samples of individuals from a FREGENE out- There is a new way of dealing with calibration time put population, together with a phenotype that de- intervals: instead of optimizing the times within the specified intervals, one can now resample them from pends on the genotype at one or more SNPs and may the intervals in a bootstrap procedure to compute con- be binary (case/control) or Gaussian. SAMPLE can also summarize the SNP minor allele frequency (MAF) fidence limits of divergence times, even with one sample of edge lengths of the input tree. spectrum and calculate r^2 values for SNP pairs. Finally, I added a few more words to the TL manual. The website http://www.ebi.ac.uk/projects/- BARGEN/ gives source code, documentation and Please note that I am still not being paid for my work example datasets. See also: and that I had no income for years. Seems that nobody 1/ Chadeau-Hyam M, Hoggart CJ, O’Reilly PF, Whit- here finds TREEFINDER worth offering me a compen- sation, a wage, a position, a perspective. Seems that I taker JC, De Iorio M, Balding DJ, Simulation of realis- must now change my strategy. tic sequence-level data in populations and ascertained samples. BMC Bioinformatics 2008, 9:364. Gangolf Jobb 2/ Hoggart CJ, Chadeau-Hyam M, Clark TG, Lam- Gangolf Jobb
math but emphasized the role of gene pleiotropy in molecular evolution as well as preliminary data analy- sis. This manuscript was rejected by MBE. Since many reviewer’s questions were related to My Genetics- 2007 Software SumTrees paper as a theoretical ground, I think it would be very helpful to solicit any critics and comments in public. Then, we may have a more balanced, objective discus- Folks, sion in our revised manuscript. This is to announce the availability of SumTrees, a Please sent your comments or critics directly to Xun Gu cross-platform Python program to summarize non- at [email protected]. Later, I will summarize all com- parameteric bootstrap or Bayesian posterior probabil- ments I receive and our brief reply. ity support for splits or clades on phylogenetic trees. Thanks advance For more information, including download, installation Xun Gu Iowa State University and usage instructions (and tutorial) please visit the [email protected] SumTrees page at: http://www.jeetworks.org/programs/sumtrees Archives of the release source code are available on Sourceforge here: http://sourceforge.net/projects/dendropy/ The Git SouthAfrica volunteers repository of the source code can be cloned by entering: EvolutionGroupLivingMammals git clone http://jeetworks.org/files/repositories/- dendropy.git – jeet
Jeet Sukumaran Volunteers needed as field assistants for the project: Division of Herpetology Department of Ecology and Evolution of Group-Living in small Mammals in the Evolutionary Biology / Natural History Museum and Succulent Karoo of South Africa Biodiversity Research Center University of Kansas Dy- che Hall 1345 Jayhawk Blvd Lawrence KS 66045-7561 Project: We study the evolutionary reasons of group living, paternal care, communal nesting and social flex- Phone: 785-864-3439 Fax: 785-864-5335 E-mail(s): ibility in the striped mouse. As this species is diurnal [email protected], [email protected] and the habitat is open, direct behavioral observations KU Page: http://people.ku.edu/ ˜ jeet/ KU Her- in the field are possible. petology: http://nhm.ku.edu/herpetology/ Photo- What kind of people are needed? Biol- graph Galleries: http://jeet.smugmug.com/ Her- ogy/zoology/veterinary students with a BSC/ pWatch Philippines: http://www.herpwatch.org/- Vordiplom or equivalent are preferred as candi- Frogs of the Malay Peninsula: http://frogweb.org dates. Applicants must have an interest in working in [email protected] [email protected] the field and with animals. Hard working conditions will await applicants, as the study species gets up with sunrise (between 5 and 6 o‘ clock), and stops its activity with dusk (19 o‘ clock). Work during nights might also be necessary. Work in the field will be done Solicit critics and comments for 5 days a week. Applicants must be able to manage extreme temperatures (below 0 at night, sometimes over 40C during days). Applicants must both be Dear All: prepared to live for long periods in the loneliness of In 2007, I have published a paper in GENETICS ti- the field and to be part of a small group. tled by Gu, X (2007) Evolutionary framework for pro- Work of field assistants: Trapping, marking and radio- tein sequence evolution and gene pleiotropy, Genetics tracking of striped mice; direct behavioral observations 175:1813-1822. in the field; maintenance and cleaning of the research Since this paper was heavy in statistics/math, we re- station. cently wrote a follow-up manuscript with much less Confirmation letter: Students get a letter of confirma- 78 EvolDir November 1, 2008 tion about their work and can prepare a report of their six weeks from the beginning of July until the middle of own small project to get credit points from their uni- August I’ve been living here, studying mice, experienc- versity for their bachelor or masters studies. ing nature like never before and being part of a small Costs: Students have to arrange their transport to the community where there was always something to laugh field site themselves. Per month, an amount of Rand and joke about! 750 (around 70 Euro) must be paid for accommoda- After arriving in Goegap, right the next morning my tion at the research station. Students must buy their scientific adventure in South Africa began: Setting and own food etc in Springbok (costs of about R 1500 or checking traps, nest observations and radio-tracking 140 Euro/month). Including extras, you should expect were our daily routine. While I got bitten by the mice costs of about 250 Euros per month. Students get an quite often in the beginning and my right middle fin- invitation letter which they can use to apply for funding ger was scarred all over, I improved quickly shaking the in their home country (eg. DAAD in Germany, SANW mice out of the traps, weighing them and checking the in Switzerland). number of the ear tag. Other duties like cleaning the Place: The field site is in the Goegap Nature Reserve cages of the mice in the captive colony, washing the dirt near Springbok in the North-West of South Africa. The from probably several months out of the traps, paint- vegetation consists of Succulent Karoo, which has been ing the new Wendy House and putting in a floor and curtains quickly added to our daily field work activities. recognized as one of 25 hotspots of biodiversity. It is a desert to semi-desert with rain mainly in winter (June It was never boring in Goegap! There was always some- to September). thing to do: studying the striped mouse, listening to When and how long: Currently we are looking for two the interesting and funny stories every member could tell or just enjoying the time while reading a book or volunteers to start in November / December, and two writing e-mails to friends to tell them about this unique volunteers to start in January. Applications for other periods are possible as we are permanently looking for experience. Here, the volunteers. Volunteers are expected to stay at least 2 / months, but longer periods of up to 6months are pre- ferred. This message has been arbitrarily truncated at 5000 characters. To read the entire message look it up at http://life.biology.- How to apply? Send a short motivation letter stating mcmaster.ca/˜brian/evoldir.html why and for which period you are interested and your CV via email to [email protected]. More information under www.stripedmouse.com Con- tact via e-mail: [email protected] Dr. Carsten Schradin Research Assistant, Zoologi- cal Institute, Department of Animal Behavior, Univer- Spain FieldAssist SocialInsects sity of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland. Tel: +41 - (0)44 635 5486 We are seeking two VOLUNTEER FIELD ASSIS- Honorary Researcher at the School of Animal, Plant TANTS, for 2-3 months starting March 2009, to and Environmental Sciences, University of the Witwa- help with a social insect behavioural ecology field tersrand, South Africa. study in southern Spain. We work on an un- Working as a field assistant in Goegap Nature Reserve usual population of paper wasps (Polistes), which live in small colonies on cactus in Andalusia, and A report by Romy H¨oppli, student at the University of the project aims to compare the direct and indi- Zurich, who staid in Goegap June to August 2008 rect benefits of helping others to breed. The work Blue skies without a single cloud for six weeks - rocky will involve censusing behaviour, marking colonies and mountains with little vegetation - yellow, orange and carrying out video observations, providing excellent pink fields of flowers in whatever direction you look first-hand experience of behavioural ecology fieldwork - small mammals, lizards and birds in our front yard within a thriving research group. Our profile can and Mountain Zebras, Springbok and Ostrich right next be found at http://www.lifesci.sussex.ac.uk/research/- door... social evolution/index.html The successful applicants This was my time at the Succulent Karoo Research Sta- must have a fitness level suitable for fieldwork, be pre- tion in Goegap Nature Reserve in South Africa! During pared to work hard and have an enthusiastic interest in evolutionary biology. A driving license and at least November 1, 2008 EvolDir 79 one years driving experience is essential; knowledge of Spanish would be useful but is not vital. Because the work involves recording colour marks on individual an- imals, the job would not be suitable for someone who is colour-blind. Tajima’sD analysis Accommodation will be in a flat shared with other members of the research group with shower, cooking facilities, etc., and is in an attractive coastal town with nice beach. The field assistants will be part of a team with one postdoctoral researcher and at least one other researcher. Air fare (from the UK) and accommodation expenses will be provided, so each applicant will need Hi to everybody, I have a question about the Tajima’s to pay only their own food/personal expenses, which D analysis implemented in DNAsp: in some papers (for are relatively cheap in Spain. instance Wheat et al. 2006, Mes et al. 2006) I found that the authors use the tajima’s D analysis consider- Informal enquiries should be sent to ing only the synonymous sites, but I don’t really find [email protected]. Applicants must be the way to do it. Is there someone who knows how to available for interview at Sussex University, and review do it? of applications will begin immediately (end October 2008) and continue until the positions are filled. Send All answers would be very helpful. a covering letter and CV, including contact details Erica (email addresses and telephone numbers) for 2 referees. Email as a single Word document or pdf to: Dr. Erica Bortolotto Biology Dept University Of Padova Via G. Colombo 3 I-35100 Padova Italy e-mail Dr. Elli Leadbeater ([email protected]) and [email protected] Tel 0039 049 8276222 Fax 0039 049 copy to Prof. Jeremy Field (j.fi[email protected]) De- 8276209 partment of Biology and Environmental Science Uni- versity of Sussex Erica Bortolotto
Teaching animations simulations TajimaD analysis
Hi all, Hi to everybody, I have a question about the Tajima’s D analysis implemented in DNAsp: in some papers (for I am wondering whether there is general interest among instance Wheat et al. 2006, Mes et al. 2006) I found the teaching community in alternative tools to teach that the authors use the tajima’s D analysis consider- population genetics and evolutionary theory? It seems ing only the synonymous sites, but I don’t really find that many of the ideas that we strive to explain are the way to do it. Is there someone who knows how to very intuitive but many students have difficulty get- do it? ting past the math and jargon. I have been thinking that Flash animations and user friendly GUI’s for some All answers would be very helpful. of the emerging evolution simulation programs would Erica be a good complement, but before deciding whether to Dr. Erica Bortolotto Biology Dept University Of commit time to this endeavour, I thought I would see whether my feelings were more widely shared. Padova Via G. Colombo 3 I-35100 Padova Italy e-mail [email protected] Tel 0039 049 8276222 Fax 0039 049 I would greatly appreciate any comments or ideas you 8276209 have, Erica Bortolotto
imations/simulations and other digital media that can contribute to teaching general biology. It is searchable, by keyword or by topic. For instance, under evolution we have 15 items that we found online: Teaching animations simulations http://uts.cc.utexas.edu/ ˜ jeac002/index.php?rm=- answers search&txtUnit=Evolution&txtTopic=0&txtSearch If you send a follow-up post to evoldir listing responses to your request, I’d appreciate your telling colleagues about this service, and suggest that if anyone has suit- Hello Evoldir, able media, to submit it for inclusion to bio-doc. I sent out a message requesting feedback on whether Dr. Daniel I. Bolnick Assistant Professor Section of animations/simulations were useful for teaching popu- Integrative Biology One University Station C0930 Uni- lation genetics / evolutionary theory (pasted below). versity of Texas at Austin Austin, TX 78712 I’ve received over 30 responses so far, all of which suggested that these teaching aids would be very use- 512-471-2824 fax 512-471-3878 danbol- ful along with the traditional teaching of mathemat- [email protected] ical and verbal concepts. A few people commented #### that deterministic processes are often more easily un- Alan Lemmon has a website for some such simulations. derstood than stochastic processes, so perhaps effort http://www.evotutor.org/ #### should focus there. One person noted that unless an- imations/simulations were directed at the sources of I saw your Evoldir posting and wanted to share some student misconceptions, they would be unlikely to help thoughts. much, but that if this was the case, they could be use- First off, I find that simulations are an absolutely in- ful. In general, there was lots of enthusiasm and some dispensable tool for teaching abstract concepts in pop- very useful comments and suggestions. I have included ulation genetics and molecular evolution. Maybe the copies of the responses that pointed out existing tools concepts are not really intuitive at all, that is why all of and have included the contact information of the re- us spent many years studying to reach the point where spondent when they were directly associated with the they are intuitive to us. Having students truly grasp development of a publicly available tool. the ideas of dynamic processes such as drift and selec- Many thanks to all who took the time to respond. tion requires getting students to use teaching tools that are themselves dynamic and also interactive. Sam Yeaman Department of Zoology University of British Columbia [email protected] My solution was to write a book, Population Genet- ics, published by Wiley-Blackwell that will be available ORIGINAL MESSAGE: this winter. The book is structured around numerous Hi all, “Interact boxes” that guide students through interac- I am wondering whether there is general interest among tive simulations to teach individual concepts. I also co- the teaching community in alternative tools to teach authored a package of simulation programs that teach population genetics and evolutionary theory? It seems fundamental population genetics concepts. The soft- that many of the ideas that we strive to explain are ware is called PopGene.S^2 (popgenes-squared). very intuitive but many students have difficulty get- More details on the book can be found at my own ting past the math and jargon. I have been thinking web page at http://www9.georgetown.edu/faculty/- that Flash animations and user friendly GUI’s for some hamiltm1/Text book.html. The simulations will of the emerging evolution simulation programs would soon be available from http://www.genedrift.org/- be a good complement, but before deciding whether to popgenes.php . I also have used the “Spreadsheet ex- commit time to this endeavour, I thought I would see ercises in ecology and evolution” book by Donovan and whether my feelings were more widely shared. Weldon for some labs. I find the book a good resource I would greatly appreciate any comments or ideas you and I have also designed other Excel simulation. One have, danger is that the students sometimes get too focused on Excel and can miss the bigger biological points. Sincerely, Sam Yeaman The Populus package by Don Alstad et al. is also very ###### useful for some evolution and genetics concepts and lots Check out www.bio-doc.org. This is a collection of an- of ecology concepts. November 1, 2008 EvolDir 81
There are actually some useful programs and anima- plex consists of diploid and triploid individuals. I am tions out there. However, they vary a lot in quality mainly working with microsatellite data and want to and interface. I would certainly encourage you to think perform assignment analyses, genetic diversity and dis- about new simulations and animations to help tances. However, most of the software currently avail- / able cannot handle triploidy. Is there someone who knows software that can perform assignment analyses with a mixed diploid/triploid dataset? And how would This message has been arbitrarily truncated at 5000 characters. I best recode my data? To read the entire message look it up at http://life.biology.- mcmaster.ca/˜brian/evoldir.html All answers would be helpful.” Because I received a lot of emails from people with the same problem, I will forward all the answers I have re- ceived. This way I hope I may help somebody else. The last email (on the bottom of this email) contained the solution for my assignment problem. Triploid data analysis Received answers: Dear Griet, Dear All, I have a similar problem, but at the same time not I am a PhD student working on the hybrid complex a very good answer to it, what I recently tried was of Pelophylax esculentus (Rana esculenta). This com- to use “popdist” http://genetics.agrsci.dk/ ˜ bernt/- plex consists of diploid and triploid individuals. I am popgen/ with this program each allele gets its own mainly working with microsatellite data and want to code and it calculates genetic distances and identity. perform assignment analyses, genetic diversity and dis- In my case I received a distance matrix which I in- tances. However, most of the software currently avail- put into QuickTree (http://mobyle.pasteur.fr/cgi-bin/- able cannot handle triploidy. Is there someone who MobylePortal/portal.py?form=quicktree) to get a tree knows software that can perform assignment analyses in New Hampshire format which then could be trans- with a mixed diploid/triploid dataset? And how would ferred in any tree viewing software. I best recode my data? I am sure this is not the most sophisticated answer and All answers would be helpful. just a try, but I would be very interested in the answer Greatly appreciated, you receive and to see how other people did it. Griet Holsbeek Best regards Marie – Drs. Griet Holsbeek Katholieke Universiteit Leuven You might have a look at a paper by Kloda et al pub- Laboratory of Aquatic Ecology Ch. de Beriotstraat, 32 lished in Heredity which makes use of an Fst analogue B-3000 Leuven Belgium Phone: +32 16 32 39 66 (secre- suitable for microsat data from polyploids to do a PCO tariat) or +32 16 32 45 72 Fax: +32 16 32 45 75 E-mail: type analysis. [email protected] website: http://- Heredity (2008) 100, 253ˆa260; www.kuleuven.ac.be/bio/eco/index.php Disclaimer: doi:10.1038/sj.hdy.6801044 http://www.kuleuven.be/cwis/email disclaimer.htm Using principle component analysis to compare genetic Griet Holsbeek
Hi, apple trees. So I would be very interested in any pro- gram for analysis. Could you please forward the an- see swers or some of them to me? thank you very much, Meirmans, P.G., E.C. Vlot, J.C.M. Den Nijs & S.B.J. regards Menken: (2003), Spatial ecological and genetic struc- ture of a mixed population of sexual diploid and Andrea Frei Molecular Diagnostics ACW Agroscope Postfach 8820 W¨adenswilSwitzerland apomictic triploid dandelions, Journal of Evolutionary Biology 16 p.343-352. I saw your query on triploid data analysis on evoldir. Meirmans, P.G., & P.H. Van Tienderen: (2004), You should check the R package ’adegenet’. I don’t GENOTYPE and GENODIVE: two programs for the know much about it, but I heard that this package deals with all levels of ploidy. http://adegenet.r-forge.r- analysis of genetic diversity of asexual organisms, project.org/ Don’t hesitate ton contact the author: Molecular Ecology Notes 4 p.792-794. [email protected] I know him and I’m and sure he could help you to solve this problem. http://www.bentleydrummer.nl/software/software/- Good luck, Perrine GenoDive.html http://www.bentleydrummer.nl/- software/software/Other%20software.html – – PELOSSE Perrine CNRS UMR 5558 - Laboratoire Darren Obbard Institute of Evolutionary Biology “BiomA˜ c trie et Biologie Evolutive” UniversitA˜ c Ashworth Labs Kings Buildings University of Edin- burgh, UK [email protected] Lab: 0131 651 Claude Bernard - Lyon 1 Equipe “Ecologie du Com- 3614 – Office [Note Change!]: 0131 650 8659 Mo- portement et Dynamique des Populations” 43 bd du 11 bile: 07968 838 635 – Home: 0131 466 0341 http:/- novembre 1918 69622 Villeurbanne cedex - France tel : /www.biology.ed.ac.uk/research/groups/obbard/ The +33 (0)4 72 43 12 86 University of Edinburgh is a charitable body, registered / in Scotland, with registration number SC005336. Hello Griet, This message has been arbitrarily truncated at 5000 characters. I do not have the answer for your question but I’m fac- To read the entire message look it up at http://life.biology.- ing the same problem with microsats in diploid/triploid mcmaster.ca/˜brian/evoldir.html
PostDocs
BaselU Bioinformatics ...... 83 ImperialCollege SpeciationGenomics ...... 90 BiK-F Frankfurt Biodiversity ...... 83 IndianaU SocialBacteriaEvolutionaryGenomics . . . . 90 CornellU 2 MicrobialEvolutionaryGenomics ...... 84 InstitutPasteur Bioinformatics ...... 91 CornellUniv AmphibianImmunity ...... 85 InstZoologyLondon PopulationGenetics ...... 91 CSIRO Canberra PlantPopulationGenetics ...... 86 LeidenU EvolutionOfWeediness ...... 92 DukeU PlantEvolutionaryGenet ...... 86 Marseille MolecularPhylogeny ...... 92 DukeU SystemsBiology ...... 86 Netherlands EvolutionaryEcol ...... 93 FlindersU PlantPopulationGenetics ...... 87 NIH RockvilleMD MosquitoEvolution ...... 94 GhentU PlantSystemsBiol ...... 87 NorthDakotaStateU ConservationGenetics ...... 94 HarvardU TheoPopGenet ...... 88 Perth AcaciaPhylogenetics ...... 95 Hobart EvolutionModelling ...... 88 Portugal Borneo ConservationGenetics ...... 96 IFREMER France TheoreticalGenetics ...... 89 ReedCollege Portland CichlidEvolution ...... 96 November 1, 2008 EvolDir 83
RutgersU EvolutionaryModeling ...... 97 UHelsinki MarinePhylogeography ...... 104 SantaFeInstitute EvolutionaryBiology ...... 97 UKonstanz MolecularEvolution ...... 104 TexasAMU ParasiteEvolution ...... 98 ULyon Cophylogenetics ...... 105 UABarcelona PopGenomics ...... 98 UManchester RegultoryEvolution ...... 105 UBristol NematodeLifeHistory ...... 99 UMissouriColumbia CompAnimalGenomics ...... 106 UBritishColumbia Biodiversity ...... 99 UNewOrleans ComparativePhylogeography ...... 106 UCalifornia EvolutionaryBiology ...... 99 UOtago NZ Microsatellite evolution ...... 107 UCaliforniaSanDiego GlycanEvolution ...... 100 UParisSud Metagenomics ...... 107 UCaliforniaSantaBarbara EvolutionaryTheory . . . .100 UppsalaU EvolutionaryGenomics ...... 108 UConnecticut PhylogeneticReconstruction ...... 100 USouthernCalifornia SpeciationGenetics ...... 109 UEastAnglia EvolutionOfLifeHistories ...... 101 UTartu Estonia Phylogenetic Comparative Methods UEdinburgh 5 DiseaseEvolution ...... 101 109 UEdinburgh HIV phylodynamics ...... 102 UTours BioinformaticsVirusEvolution ...... 110 UFlorida EvolutionarySystemsBiol ...... 102 VassarCollege Plasticity ...... 110 UGeorgia EvolutionaryBiology ...... 103 Vienna GeneExpressionEvolution ...... 111 UGeorgia PlantAgeingQuantGenet ...... 103 UGeorgia PlantFungalEvolutionaryEcol ...... 103
2008 will be given full consideration. Interviews will be held as soon as possible in November. Contact information: Prof. Dr. Dieter Ebert, BaselU Bioinformatics Basel University Zoologisches Institut, Vesalgasse 1, 4051 Basel, Switzerland Email: [email protected] Tel.+41-(0)61-267 03 60 Postdoc position in microbial bio-informatics and evo- [email protected] [email protected] lution is available in the division of Evolutionary Biology, In- stitute of Zoology at Basel University, Switzerland. I am looking for a highly motivated post-doc with in- terest in bio-informatics and evolutionary genomics of BiK-F Frankfurt Biodiversity pathogens. A background in bio-informatics and ge- nomics is essential. The position is funded to work on the microparasites (bacteria and microsporidians) of Daphnia and includes genome assembly and annota- The Biodiversity and Climate Research Centre (BiK- tion, SNP detection, and comparative genomics. Previ- F) has recently been founded by the Senckenbergische ous experience with the specific study system (Daphnia Naturforschende Gesellschaft, the Goethe-Universit¨at Frankfurt am Main, and additional partners. It is and its microparasites) is not required. Excellent writ- funded by the Hessian State Initiative for the Develop- ten, verbal, and interpersonal skills, a good work ethic, and the ability to think creatively and critically are de- ment of Scientific and Economic Excellence (LOEWE). sired. Starting dates are flexible, from November 2008 The mission of the Centre is to carry out internationally onwards. The position is initially for 1 year but can be outstanding research on the interactions of biodiversity extended repeatedly. and climate change at the organism level. The Project Area D “Laboratory Centre” invites applications for The post-docs will be part of Dieter Ebert’s group the position of a working on the evolution of host-parasite interactions. Details about the group can be found under: http://- *Postdoctoral Researcher (Ref. TP D 5.1 #D04)* evolution.unibas.ch/ Please send application by E-mail The applicant will be responsible for a project aiming to Dieter Ebert ([email protected]). Applications to identify candidate genes playing key roles for cli- (1 pdf file, please) should include a CV, a list of publica- mate adaptation in various invertebrate taxa (Daphnia, tions and a 1 page description of your research interests Chironomus, Radix). The project aims at identifying and motivation. Please give names and email addresses genes which are positively selected in response to cli- of two persons who are willing to write a letter of recom- matic conditions. To this end, genomic resources (EST mendation. Applications received before 30. October bank, micro-array) for Radix have to be established; for 84 EvolDir November 1, 2008 the other taxa, these resources are already available. Furthermore, the technical implementation of the high throughput laboratory is part of the responsibilities. Participation in university teaching is possible, while the acquisition of external research funding is highly CornellU 2 desired. MicrobialEvolutionaryGenomics The applicant should hold an earned Ph.D. in molecu- lar biology, preferably with a strong focus on transcrip- tome analysis. She or he should already have experi- ence with high throughput DNA-sequencing technolo- Two Post-doctoral positions in microbial evolutionary gies and should be interested in ecological and climate genomics at Cornell University change issues. Applicants should have a strong pub- lication record. Very good written and oral English CANDIDATES ARE INVITED TO APPLY for two language skills, willingness to learn at least basic Ger- post-doctoral positions at Cornell University, both sup- man and interest in joining a multidisciplinary research ported by a new 5-year NIH grant entitled, “Evolu- team are required, as well as proven organising abilities. tionary genomics and population genetics of pathogenic streptococci.” One position will be in the laboratory of The Bio+C Research Centre advocates gender equal- Michael Stanhope and the other will be jointly super- ity. Women are therefore strongly encouraged to apply. vised by Adam Siepel and Carlos Bustamante. The Equally qualified severely handicapped applicants will Stanhope, Siepel, and Bustamante laboratories will in- be given preference. teract closely with each other and with the laboratory The contract shall start as soon as possible and will of Robert Burne, a collaborator at the University of initially be restricted until December 31, 2010 with Florida, in meeting the goals of this research project. a possible extension being subject to personal perfor- The bacterial genus Streptococcus includes several im- mance and availability of funds. The duty station will portant human pathogens. The goal of this project be Frankfurt am Main, Germany. is to obtain a thorough understanding of the adap- Please send your application by mail or e-mail, includ- tive genomic differences within and between the taxa ing a detailed CV, 3 references, a list of publications of this genus. The project will involve the latest DNA and up to five selected re/e-prints to sequencing technologies and state-of-the-art methods for detecting selection in both genes and noncoding Prof. Dr. Dr. h.c. V. Mosbrugger, Scientific Coordina- functional elements. It is expected to provide an un- tor Biodiversity and Climate Research Centre, Sencken- precedented level of detail on molecular adaptation and berganlage 25, D-60325 Frankfurt am Main, Germany. molecular evolution for taxa of this genus. It will also E-mail: [email protected] provide the first thorough assessment of the role of lat- For enquiries about the position and the contract con- eral gene transfer (LGT) and positive selection in the ditions please write to Prof. Dr. B. Stribrny (E- diversification of a group of closely related bacterial mail: [email protected]) and for sci- taxa, as well as an improved understanding of the role entific enquiries to PD Dr. M. Pfenninger (E-mail: of LGT in bacterial species innovation and pathogene- [email protected]) or Prof. Dr. J. sis. Oehlmann (E-mail: [email protected]). A description of each of the postdoctoral positions fol- – PD Dr. Markus Pfenninger Abt. Okologie¨ & Evo- lows: lution J.W.Goethe-Universit¨atBioCampus Siesmayer- Laboratory of M. Stanhope: We are looking for an evo- straße D 60054 Frankfurt am Main Germany lutionary computational biologist, well versed in mod- Tel.: ++ 49 69 798 24714 Fax : ++ 49 69 798 ern evolutionary biology theory, and computational 24910 eMail: [email protected] http:/- analysis, with some basic bioinformatics skills such as /user.uni-frankfurt.de/ ˜ markusp Markus Pfenninger R and Perl programming. An added bonus would
Ithaca, NY 14853-2701. is available in the Mitchell-Olds lab, Department of Bi- ology and Institute for Genome Sciences and Policy, [email protected] [email protected] Duke University. We seek a highly motivated colleague with laboratory experience in molecular methods and a strong background in population, quantitative, and/or ecological genetics. With funding from NIH and NSF we are examining the evolutionary significance of a CSIRO Canberra cloned QTL controlling insect resistance in relatives of PlantPopulationGenetics Arabidopsis, as well as QTL and association studies of flowering differences across climatic gradients in the Rocky Mountains. Applications are invited for a three year OCE Postdoc- Salary is competitive and support is available for sev- toral Fellowship in the restoration of resilient native eral years. Women and members of under-represented vegetation in agricultural landscapes using ecological groups are especially encouraged to apply. Duke Uni- and genetic approaches. The position will be based at versity is an Equal Opportunity/Affirmative Action CSIRO’s largest research centre, Black Mountain Lab- Employer. oratories Canberra, Australia. A start date in winter 2009 is preferred, although a The successful applicant will be a biologist with training later start date might be considered for exceptional in population genetic theory and practice who also un- candidates. Applicants should submit a curriculum vi- derstands plant reproductive ecology. Familiarity with tae and a brief summary of current research and future ecological restoration would also be helpful. You will research interests. Applicants should also arrange for be responsible for research on model plant species in three letters of recommendation to be sent to Thomas broad and heterogeneous landscapes, focusing on: 1). Mitchell-Olds ([email protected]). the scale and intensity of gene flow, 2). variation in plant reproduction, 3). the composition, abundance Thomas Mitchell-Olds, Professor Box 90338 Institute and activity of pollinator and seed disperser commu- for Genome Sciences & Policy Department of Biology nities. Then, to synthesise findings, the applicant will Duke University Durham, NC 27708 develop models of these landscape scale processes, with Express mail address: Duke University FFSC room the help and collaboration of other researchers. You 3335 Durham, NC 27708 will join a multidisciplinary and highly collaborative team with broad research foci including pollination bi- Phone: 919-668-1635 Fax: 919-660-7293 E-mail: ology, plant-animal interactions, and the use of genetic [email protected] tools to understand landscape processes such as gene Lab web page: http://www.biology.duke.edu/mitchell- flow and weed invasion. olds/ [email protected] [email protected] Candidates should have obtained a PhD in ecology, population genetics, plant reproductive biology, vege- tation restoration or a related field and on commence- ment of the Fellowship, have a maximum of three years relevant work experience since conferral of their doctor- DukeU SystemsBiology ate. Full details: https://recruitment.csiro.au/asp/- POSTDOCTORAL POSITIONS in the Duke Univer- job details.asp?RefNo=2008%2F1067 sity Center for Systems Biology. [email protected] The DCSB is seeking highly motivated postdoctoral candidates with experience in computational and/or mathematical approaches relevant to the understand- ing the function of biological systems. Positions are available in several collaborative research groups inves- DukeU PlantEvolutionaryGenet tigating a broad range of topics in systems biology with a focus on network control. Currently, there are six projects investigating various aspects of cell cycle con- A Postdoc in PLANT EVOLUTIONARY GENETICS trol, development, and network evolution (see http:/- November 1, 2008 EvolDir 87
/www.genome.duke.edu/centers/csb/ for project sum- The School of Biological Sciences is seeking to appoint maries and faculty). All appointees will be affiliated a Postdoctoral Research Associate to provide research with the Duke Center for Systems Biology, a cross- and technical support as a participant in a project on school, campus-wide academic center that is also one of the population genetics and ecology of selected elements the NIH-supported National Systems Biology Centers. of the flora of mound springs in the far-North of South Highly qualified candidates will compete for the DCSB Australia. The appointee will be expected to conduct Postdoctoral Fellow Award. All Fellow Awards provide field work and also to examine the population genetics stipend support for one year, with the expectation of of selected plant taxa using molecular markers. renewal for a second year. The position is available immediately on a fixed term, Women and members of under-represented groups are full-time basis for two years with a possible extension especially encouraged to apply. U.S. citizenship is not depending on funding. The University is keen to ob- a requirement; however, international scholars should tain the services of the successful applicant by late contact us before applying because of visa restrictions. 2008/early 2009. Candidates should submit a curriculum vitae, a brief Closes: Monday 27 October 2008. summary of current research and future research in- terests, and reprints of 2 or 3 key publications at Applications must address the specified selection cri- www.academicjobsonline.org. Applicants should also teria. Detailed position information (including selec- arrange for 3 letters of recommendation to be uploaded tion criteria) and essential information for intending to this website. applicants are available via the Jobs@Flinders website: http://www.flinders.edu.au/employment. Duke University is an Equal Opportunity/Affirmative Action Employer. Previous applicants for this position will need to sub- mit a new application in order to address the amended – Dr. Sayan Mukherjee phone: 919 684-4608 Assis- position description. tant Professor fax: 919 668-0795 Computational Biol- ogy, Statistics, www.stat.duke.edu/˜sayan & Computer Applications should be lodged via the Jobs@Flinders Science Duke Scholar in Genomic Medicine Duke Uni- website: http://www.flinders.edu.au/employment/- versity employment home.cfm Duncan Mackay
GhentU PlantSystemsBiol FlindersU PlantPopulationGenetics
The Bioinformatics and Evolutionary Genomics re- Hello, please find below a new advertisement for a post- search group, part of the VIB Department of Plant Sys- doctoral research associate to work with us on the pop- tems Biology, located in Gent, Belgium, is looking for ulation genetics of mound spring plants in South Aus- an enthusiastic and highly motivated tralia. We would be grateful if you could place the advertisement below on your EvolDir web site. Postdoctoral researcher Thanks, Molly Whalen & Duncan Mackay This 3 year full-time position is part of a large and am- bitious project between the Department of Plant Sys- Dr. Duncan Mackay School of Biological Sciences tems Biology, Gent University, and CropDesign BASF. Flinders University GPO Box 2100 Adelaide S.A. 5001 AUSTRALIA The ultimate goal of the project is: - To identify candi- date maize genes involved in various plant growth and Phone 61-8-82012627 FAX 61-8-82013015 developmental processes. Many transcriptomic exper- http://www.scieng.flinders.edu.au/biology/people/- iments under different growth conditions will be per- academic/mackay d/index.htm l formed, and the results will be analyzed and integrated using a systems biology approach. - The successful can- RESEARCH ASSOCIATE Research Level A or B Level didate will be responsible for the bioinformatics part of A: $52,800 to $64,308 Level B: $67,696 to $70,234 the project and will interact closely with the other part- Reference No: 8222 ners involved. 88 EvolDir November 1, 2008
Profile and continue until the position is filled. Harvard Uni- versity is an equal opportunity/affirmative action em- - Ideal candidates for this position should have a PhD ployer. in bioinformatics with a strong publication record, and should be familiar with microarray data processing and – David Haig the statistical analysis of biological data. - A good Professor Department of Organismic and Evolutionary knowledge of biological processes and pathways and a Biology, Harvard University, 26 Oxford Street, Cam- strong interest in plant biology will be an advantage. bridge MA 02138 - The candidate should be fluent in English and have good communication and interpersonal skills. Phone: 617-496-5125 Fax: 617-495-5667 Interested candidates should submit an electronic copy David Haig
IndianaU SocialBacteriaEvolution- ImperialCollege SpeciationGenomics aryGenomics
IMPERIAL COLLEGE LONDON Post-doctoral Position in Evolutionary Genomics of So- Division of Biology: Ecology and Evolution cial Bacteria at Indiana University Postdoc Research Associate SPECIATION GE- Applications are invited for a postdoctoral position in NOMICS the laboratory of Gregory Velicer. Salary: GBP 25,310 - GBP 36,800 per annum The Myxobacteria are soil bacteria that exhibit highly This is an exciting opportunity for a Research Asso- complex social behaviors, including social predation of ciate with an interest in Speciation Genomics. You will other microbes, social motility and development into carry out cutting edge research investigating the mech- multicellular fruiting bodies in response to starvation. anisms of ecological speciation in two sympatric palms We are sequencing myxobacterial genomes at multi- endemic of Lord Howe Island (Nature 441:210, 2006), ple taxonomic levels, including many strains of the conducting AFLP genome scans, BAC probing, DNA model species Myxococcus xanthus isolated from a va- sequences and coalescence analyses. riety of local populations around the globe. In a bio- geographically explicit context, we seek to characterize The successful candidate will be a highly motivated in- the adaptive evolution of genomic elements involved in dividual with practical experience in population genet- myxobacterial social behavior, both within species and ics and/or genomics and strong interests in evolutionary between species that vary in their degree of multicellu- biology. lar complexity. The post is funded for 31 months by the Natural Envi- We seek an evolutionary computational biologist skilled ronment Research Council and will be based at Silwood in evolutionary theory, bioinformatics and comparative Park Campus. You will work closely with Dr Vincent genomic analysis and familiar with current and emerg- Savolainen and his research group. ing sequencing technologies. The successful candidate Further details of the research group can be ob- will analyze patterns of selection and horizontal gene tained from the research group website: http:/- transfer among sequenced myxobacterial genomes and /www3.imperial.ac.uk/people/v.savolainen Applica- will help manage ongoing sequencing efforts, including tion Form & Job Description and Person Specifica- sequence assembly and closure of some genomes. Ex- tion, see: http://www3.imperial.ac.uk/employment/- perience in wet-lab bacterial genetics is also advanta- research/ns2008183dp Completed application forms geous and may allow participation in ongoing studies of accompanied by a curriculum vitae and the name the evolutionary genetics of social adaptations in lab- and contact details of two referees to: Diana Ander- evolved lineages of M. xanthus. The successful can- son, Imperial College, Silwood Park Campus, Buck- didate might also participate in ecology experiments hurst Road, Ascot, Berkshire, SL5 7PY. Email: involving metagenomic analysis of soil microbial com- [email protected] munities. Closing date: 31 October 2008 Salary and benefits will be competitive. Candidates November 1, 2008 EvolDir 91 should be highly motivated, independent, interactive, projects at the Institut Pasteur. and work well in collaboration with others. Applica- Requirements: double background in tions should include a CV, a brief description of re- biology+informatics (PhD degree), including ba- search experience and interests and contact informa- sics in algorithmic, at least one programming language tion for three references. Please send applications and (C, Perl), knowledge of database management systems inquiries to Gregory Velicer at [email protected]. (SQL), development of web interfaces (Java), and skills Indiana University has outstanding researchers and re- in standard methods and tools used in bioinformatics sources in evolutionary genomics, including the Center (sequence and genome analysis) – expertise in statistics for Genomics and Bioinformatics. Bloomington, Indi- and in microbiology would be appreciated. ana is a culturally dynamic community with many sur- Location: Institut Pasteur, PARIS, France. Duration: rounding natural areas and opportunities for outdoor 2 years, immediately available. Salary: depending on recreation. qualifications. Website links: Velicer Lab: www.bio.indiana.edu/- Application (detailed CV, cover letter, references): facultyresearch/faculty/Velicer.html Indiana Uni- Ivan Moszer - [email protected] Plate-forme versity Center for Genomics & Bioinformatics: Int´egration et Analyse G´enomiques Institut Pasteur 28 http:// cgb.indiana.edu Indiana University De- rue du Docteur Roux 75724 PARIS Cedex 15 FRANCE partment of Biology: http://www.bio.indiana.edu [email protected] gre- Sylvain Brisse
InstZoologyLondon InstitutPasteur Bioinformatics PopulationGenetics
A post-doctoral position is available at the Institut Pas- Postdoctoral Research Assistant in Population Genetics teur, in the laboratory “Genomic Integration and Anal- ysis” (http://genopole.pasteur.fr/PF4). at Institute of Zoology, Zoological Society of London Subject: Computational integration and analysis of Applications are invited for a postdoctoral position in next-generation sequencing data for the characteriza- population genetics on a BBSRC funded project “In- ference of genealogical relationships among individuals tion of emerging infectious clones. from genetic markers”. The appointee of the position is Research program: Next-generation sequencing (such expected to work with the PI (Dr. J. Wang) and collab- as Illumina GA or 454 GS FLX), implemented in popu- orators (Dr. W. C. Jordan and Dr. A. F. G. Bourke) lation genomic studies or genomic epidemiology, makes to develop statistical methodologies inferring genealog- it possible to sequence multiple isolates of a same mi- ical relationships and relatedness between individuals crobial species. Subsequent data analysis raises new from marker information, and to test the methodolo- questions, which require innovative computing strate- gies using empirical and simulated datasets. However, gies. The successful applicant mission aims at the de- the appointee has the freedom to work on other projects velopment of methods and tools for handling and ana- of his/her interest as long as these fall into the broad lyzing such data. The project is threefold: (i) the defi- conservation genetics theme of our research group. nition of adequate data models (e.g. defining reference sequences), (ii) the construction of cognate databases, The post is for a fixed term of 10 months and is available associated with analysis tools and relevant query in- from the 1st of February 2009. The starting (annual) terfaces (e.g. searching for polymorphic regions, an- salary for the position is £26,470 plus £3,051 London alyzing selection pressure, identifying genomic islands weighting. The salary for the RA position has been enhanced by 2 spine points to attract skilled staff in and horizontal transfers), and (iii) the biological inter- selected research areas by the British government. pretation of the data using the previously developed tools (e.g. correlating genomic profiles with serological, The candidate for the position should have a doctor- physiopathological or epidemiological features). These ate in biology (population genetics; statistical genetics; analysis will be carried out in collaboration with sev- computational biology) or other related fields (statis- eral associated labs that are running genomic typing tics, applied mathematics or physics, bioinformatics). 92 EvolDir November 1, 2008
Desired qualifications: demonstrated knowledge of pop- the history of feral populations. This ERGO project at ulation genetics or/and statistics, excellent program- Leiden University is part of a collaboration with the ming experience, good record of scientific publication. ERGO project of the University of Amsterdam (Prof. Full applications (including a cover letter outlining re- Van Tienderen) about ecosystem effects of future GM search interests, complete CV, publication list and con- crops. tact details for three referees) should be sent to the HR Postdoc position In collaboration with a technician Department, Zoological Society of London, Regent’s the postdoc will grow plants under a range of condi- Park, London NW1 4RY, UK ([email protected]) by 20 De- tions, will estimate demographic parameters for differ- cember 2008. Informal enquiries should be sent to jin- ent genotypes and will combine this information in a [email protected]. mathematical model. Read about the Institute of Zoology on http://- The candidate should have: www.zoo.cam.ac.uk/ioz/ and ZSL’s work on http://- 0. a PhD in ecology, preferably related to life-history www.zsl.org theory 0. an excellent publication record 0. knowl- Dr. Jinliang Wang Institute of Zoology Regent’s Park edge of mathematical modelling 0. basic knowledge of London NW1 4RY Phone: +44 20 74496620 Fax: +44 molecular techniques like AFLP 0. basic knowledge of 20 75862870 http://www.zoo.cam.ac.uk/ioz/index.htm chemical analyses 0. sufficient fluency in writing and Jinliang Wang
NorthDakotaStateU ConservationGenetics
CONSERVATION GENETICS POSTDOCTORAL November 1, 2008 EvolDir 95
FELLOW position in the Department of Biological Sci- seeking to appoint a Conservation Research Scientist on ences at North Dakota State University, Fargo, ND. the project “Assessment of population genetic variation The Postdoc will conduct collaborative research with and structure of Acacia karina, and its phylogenetic re- the PI (Craig Stockwell) and various graduate students lationship to other Acacia species” concerning the conservation and evolutionary genetics We seek an experienced research scientist for a 3-year of native and introduced fish populations. The post- appointment to conduct an academically rigorous re- doc will also teach one course and assist with coor- search program aimed at understanding potential ge- dinating the Environmental & Conservation Sciences netic impacts on A. karina from proposed mining, and Graduate seminar each year of the appointment. Re- working towards a more comprehensive phylogeny of quires Ph.D. (or ABD) in biology, conservation biol- Acacia. Duties include the assessment of population ogy or related field; clear and effective communica- genetic structure using microsatellites, to conduct field- tion skills, lab experience with genetic techniques; ex- based and lab-based research in population and conser- perience in work-related record keeping; use of Inter- vation genetics, breeding and mating systems, pollen net; use of computer applications such as word pro- and seed dispersal, population ecology and molecular cessing, graphic applications and spreadsheets. Pre- phylogenetics. The successful applicant will be required fer experience with microsatellites and other markers; to present research results in the usual academic fo- teaching experience is also preferred. Salary will be rums, as well as to prepare reports for, and regularly commensurate with experience. An excellent bene- liase with, industry partner representatives, and to seek fits package will be provided. For a complete descrip- and co-supervise post-graduate research programs. tion and the web-based application process please visit jobs.ndsu.edu/applicants/Central?quickFindP609. For Minimum requirements are a PhD in a relevant disci- more information, please contact Craig Stockwell pline, demonstrated research achievements in molecular ([email protected]), or call the NDSU Human ecology and/or molecular systematics, an understand- Resources Office (701) 231-8525. Screening will begin ing of genetic issues associated with small populations, November 7, 2008 (or as soon as a competitive appli- high-level communication skills, a strong publication cant is identified), and continue until the position is record, and a current drivers license. For appointment filled. NDSU is an equal opportunity institution. at Level 6, a minimum of two years relevant postdoc- toral and/or workplace experience is required. Craig A. Stockwell James A. Meier Associate Profes- sor Department of Biological Sciences Environmental & While the position will be based at the Biodiversity Conservation Sciences Graduate Program Stevens Hall Conservation Centre at Kings Park and Botanic Gar- North Dakota State University Fargo, ND 58105 dens, Perth, Western Australia, an ability to work in isolated areas is essential. phone (701) 231-8449 fax (701) 231-7149 e-mail [email protected] web site: http://- The Science Directorate at BGPA undertakes inte- www.ndsu.nodak.edu/ndsu/stockwell/ grated and innovative research in native plant biology, underpinning conservation and ecological restoration of “Craig.Stockwell”
For further details, contact Dr Siegy Krauss (08 9480 Europe. Researchers at the IGC work on a wide range 3673 or [email protected] ). Details about of subjects from epidemiology, to genetics, evolution- the position, and more information on the Science Di- ary biology, bioinformatics and theoretical immunology. rectorate, are available at http://www.bgpa.wa.gov.au The IGC is located in Oeiras, a small sea-side town 20 Closing date: 4pm, 17th October 2008 min. by train from downtown Lisbon, along the Tagus. Siegy Krauss
The Fellowships provide three years of salary plus op- A postdoctoral position is available in the lab of Charles portunities to travel, bring visitors to SFI, and organize Criscione at Texas A&M University, Dept. of Biology. workshops. Fellows are independent researchers, and The postdoc would participate in studies on the pop- work on whatever most interests them, often, but not ulation genetic and mating system dynamics of para- necessarily, in collaboration with the faculty and other sitic flatworms. A background in empirical or theo- Fellows. retical population genetics (with molecular laboratory skills such as PCR, cloning, sequencing, and microsatel- The one caveat is that we have no wet-lab facilities, and lite/SNP genotyping) is highly desirable. Additional the research here is primarily theoretical and computa- tional. So, if you are a theoretical or computational experience in parasite systems is preferred, but not a evolutionary biologist, please check us out. I have at- prerequisite. Applicants must have a Ph.D. in evolu- tached our ad text below. To find out more about the tionary biology, ecology or related fields. Applicants research and researchers at SFI, please look at http://- at or near the end of their Ph.D. are encouraged to apply. The position will remain open until filled. An- www.santafe.edu/research/ . If you have any questions, ticipated start date is mid to late Spring of 2009, but is please feel free to contact me directly. negotiable. The Department of Biology faculty (http:/- Best regards, Jon Wilkins /www.bio.tamu.edu/FACMENU/facalph.htm) has di- POSTDOCTORAL FELLOWSHIP verse expertise ranging from molecular/developmental genetics to evolutionary and behavioral theory. The Postdoctoral Fellowship appointments at the Santa Fe Criscione lab is also part of the Interdisciplinary Re- Institute begin fall 2009. Appointed for up to three search Program in Ecology and Evolutionary Biology years, fellows pursue research questions of their own at A&M (http://eeb.tamu.edu/about/). Texas A&M design, are encouraged to transcend disciplinary lines, University is an equal opportunity, affirmative action and collaborate with SFI faculty, other Fellows, and employer committed to diversity. researchers from around the world. Fellows are encour- aged to invite speakers, organize workshops and work- To apply, please send an email with a letter of inter- ing groups, and engage in research outside their fields. est, C.V., and contact information for 3 references to Funds are available to support this full range of research [email protected] activities. For information on the lab, please see http:/- The Santa Fe Institute is an affirmative action, equal /www.bio.tamu.edu/FACMENU/FACULTY/- opportunity employer. We are building a culturally di- CriscioneC.htm http://www.geocities.com/- verse faculty and staff and strongly encourage applica- cooch2000/ Charles D. Criscione, Assistant Professor tions from women, minorities, individuals with disabili- Department of Biology Texas A&M University 3258 ties, and covered veterans. Successful foreign applicants TAMU College Station, TX 77843-3258 must acquire an acceptable visa, usually J-1. phone: (office: 979-845-0917, lab:979-845-0925) TO APPLY: View the full position announcement and email: ([email protected]) faculty application instructions at www.santafe.edu/postdoc. web page: www.bio.tamu.edu/FACMENU/- Application due by November 14, 2008. For further FACULTY/CriscioneC.htm pdf reprints web page: information, email [email protected]. www.geocities.com/cooch2000 Charles Criscione
Postdoc We are looking for a motivated Population Geneti- TexasAMU ParasiteEvolution cist / Bioinformatician to cooperate in an international project to infer population genetic parameters from next generation sequencing (NGS) porcine data. In ad- Postdoctoral Position in Evolutionary/Molecular Ecol- dition, the incumbent will carry out coalescence and ogy of Parasites forward simulations of NGS data to study the perfor- November 1, 2008 EvolDir 99 mance of different inference approaches under diverse all aspects of biology. demographic and selective scenarios. Desired capabil- Mark Viney School of Biological Sciences University of ities are good programming skills in a script language Bristol Woodland Road Bristol BS8 1UG UK (Perl preferably) and C/C++ or similar, and ability to work as a team member. The position is available phone: + 117 928 7469 fax: +117 331 initally for one year with gross salary 2300 - 2500 eu- 7985 http://nematode.bio.bris.ac.uk/ Email: ros / month. Desired starting date is January 2009. [email protected] The work location is at Veterinary School in Barcelona, Mark Viney
Thanks! Joel Sachs Postdoctoral position “Causes and Consequences of Glycan Evolution” Applications Due November 1, 2008! THE PROGRAM The University of California Pres- A postdoctoral position is available to study the role ident’s Postdoctoral Fellowship Program was estab- of sperm surface glycans for reproductive compatibil- lished in 1984 to encourage outstanding women and ity and speciation. We are a new lab that focuses on causes and consequences of glycan evolution at the in- minority Ph.D. recipients to pursue academic careers at the University of California. The current program tersection of natural and sexual selection. We combine offers postdoctoral research fellowships, faculty men- comparative studies of human and great ape sperm sur- toring, and eligibility for a hiring incentive to qualified face glycans with experiments using transgenic mice in scholars in all fields whose research, teaching, and ser- order to test the role of sperm surface glycosylation for reproductive compatibility via cryptic female choice. vice will contribute to diversity and equal opportunity at the University of California. Individuals with an interest in evolutionary glycobiol- CONTRIBUTIONS TO DIVERSITY AND EQUAL ogy and with experience in mouse reproduction are in- OPPORTUNITY These contributions may include vited to apply. Please send a cover letter, CV, and names, e-mail addresses and telephone numbers of three public service addressing the needs of our increasingly references to Pascal Gagneux at [email protected]. diverse society, efforts to advance equitable access to higher education for women and minorities, or research Department of Cellular and Molecular Medicine and focusing on underserved populations or understanding Glycobiology Research and Training Center, University issues of racial or gender inequalities. The program is of California, San Diego seeking applicants with the potential to bring to their [email protected] academic careers the critical perspective that comes from their non-traditional educational background or understanding of the experiences of groups historically underrepresented in higher education. FACULTY APPOINTMENTS The goal of the program UCaliforniaSantaBarbara is to provide research opportunity and career develop- EvolutionaryTheory ment for scholars whose work will enhance the diversity of the academic community at the University of Califor- nia. Of the President’s Postdoctoral Fellows appointed from 2001-06, over 75% have received tenure track fac- ulty appointments and over 40% have received faculty appointments at University of California campuses. WELCOME Please explore our web page for more in- formation about the program including evaluation and A postdoctoral position in evolutionary theory is cur- selection, how to apply, terms of appointment, and re- rently available in the Proulx lab at UCSB. The postdoc cipients of President’s Postdoctoral Fellowship awards. would participate in an NSF funded project to develop theory describing the evolution of genetic interactions More information at: http://www.ucop.edu/acadadv/- in ecological context. Interested applicants should have ppfp/ – Joel L. Sachs Assistant Professor Department a strong background in evolutionary theory, mathemat- of Biology University of California 1208 Spieth Hall ical modeling, and interests in either organismal adap- Riverside, CA 92521 [email protected] Office (951) 827- tation or molecular evolution. 6357 Fax (951) 827-4286 http://www.biology.ucr.edu/- people/faculty/Sachs.html [email protected] To apply, please send an email with a letter of inter- est and cv to [email protected] and include “theory postdoc” in the subject. For more information on the lab and our research see http://www.lifesci.ucsb.edu/eemb/faculty/proulx/- UCaliforniaSanDiego index.html, http://dx.doi.org/10.1086/426873 , GlycanEvolution http://dx.doi.org/10.1111/j.0014-3820.2006.tb01168.x . Stephen Proulx Assistant Professor Ecology, Evolution, and Marine Biology UC Santa Barbara [email protected] November 1, 2008 EvolDir 101
28,290 to 33,780 per annum (pay award pending) A NERC funded postdoctoral position is available from December 2008 for a period of two years and nine months. The goal of the research is to use the unique UConnecticut correlative and experimental data set compiled on the PhylogeneticReconstruction Seychelles warblers to undertake a comprehensive lon- gitudinal study of telomere shortening in a wild avian population. The study will address a fundamental problem in evolutionary biology; namely how to mea- Posdoctoral Investigator in Phyloge- sure and compare the costs that individuals pay when netic/Phylogenomic Reconstruction at the University participating in different activities/experiences in their of Connecticut. natural setting. The accurate estimation of such costs We seek a postdoctoral scientist with experience in is essential to our understanding of the trade-offs in- phylogenetic analysis and programming and a strong herent in the evolution of life histories. The work will biological/microbiological/evolution background. Our be undertaken with Dr David S Richardson and part- NSF-Assembling the Tree of Life funded project ex- ners involved in the overall Seychelles warbler project amines the role of lateral gene transfer in the evolu- (J Komdeur and T Burke) and the specific telomere tion using the Halobacteriales and Thermotogales as work (P Monaghan and S Verhulst). model systems. The position will commence no later The researcher will help to develop molecular protocols than January 1st, 2009. Applicants must have a Ph.D. to screen for telomere length in the Seychelles warbler. at the time of employment. The University of Con- They will then; 1) determine whether telomere shorten- necticut, rated first among public universities in New ing be used as a measure of biological aging in this wild England, is located in northeastern Connecticut with population, 2) investigate the relative costs, in terms of easy access to Boston and New York City. The web telomere shortening, of different stresses, and, 3) test page of the Department of Molecular and Cell Biol- the idea that individual variation in telomere shorten- ogy is http://mcb.uconn.edu. Electronic applications ing rate can reflect an individuals ability to withstand should include a curriculum vitae and contact informa- these stresses and, therefore, provide an indicator of tion for three references. Applications should be sent individual quality. to Drs. Kenneth Noll ([email protected]), R. Thane Papke ([email protected]), or J. Peter Gogarten Applicants must have, or be about to obtain, a PhD ([email protected], http://gogarten.uconn.edu). in a relevant discipline such as evolutionary or be- havioural ecology and have a keen interest in under- – standing life history trade-offs and senescence. Prac- J. Peter Gogarten Professor of Molecular and Cell Bi- tical experience in modern molecular techniques, such ology University of Connecticut Unit 3125, BPB 404 91 as PCR/sequencing, is essential. Field experience and North Eagleville Road Storrs CT 06269-3125 USA animal handling are desirable as there may be the op- Phone: 860 486 4061 (office) 860 486 1887 (lab) portunity to participate in fieldwork. FAX: 860 486 4331 Email: [email protected] www: Closing date: 12 GMT on 26 September 2008. http://gogarten.uconn.edu/ [email protected] Further particulars and an application form can be obtained from the Univer- sity’s web page at: www.uea.ac.uk/hr/jobs/ <file:///C:\Documents%20and%20Settings\ k835\Local%20Settings\ Temporary%20Internet%20Files\ UEastAnglia BIO\www.uea.ac.uk/hr/jobs/> or by e-mail at: EvolutionOfLifeHistories [email protected] or by calling the answerphone on 01603 593493 or by mail to the Human Resources Division, UEA, Norwich NR4 7TJ. Telomeres as biomarkers of costs and quality in the Sey- Dr. David S. Richardson School of Biological Sciences, chelles warbler University of East Anglia, Norwich NR4 7TJ England UNIVERSITY OF EAST ANGLIA - SCHOOL OF BI- http://biobis.bio.uea.ac.uk/biosql/fac show.aspx?ID= OLOGICAL SCIENCES 325 email [email protected] Telephone 01603 SENIOR RESEARCH ASSOCIATE Ref: RA519 591496 FAX 01603 592250 102 EvolDir November 1, 2008
“Richardson David Dr (BIO)” SC005336.
UEdinburgh 5 DiseaseEvolution UEdinburgh HIV phylodynamics
Post Doctoral Research Opportunities at University of University of Edinburgh Edinburgh. Institute of Evolutionary Biology Two Advanced research fellowships (3 years, extend- able) and three 2-year fellowships at: Postdoctoral Research Fellow Centre for Immunity, Infection and Evolution ? A Well- HIV PHYLODYNAMICS come Trust-funded Centre-in-Development ? Salary: GBP 32,795 ? GBP 39,160 per annum The University of Edinburgh has recently established An evolutionary biologist or infectious disease epidemi- the Centre for Immunity, Infection and Evolution, as ologist is required to join the group of Professor An- a new initiative in infectious disease research with drew Leigh Brown on an MRC-funded position to anal- funding from The Wellcome Trust. The Centre yse HIV sequence data to infer the structure of the combines over 20 Principal Investigators with estab- transmission network in the UK population using time- lished research funding. Full details on constituent resolved phylogenies. See PLoS Med 5(3): e50 2008 for laboratories of the Centre are available on http://- an example of this application of phylodynamics. sbsweb2.bio.ed.ac.uk/iie/. The Centre offers an inno- There is a full background with links to publications at: vative Fellowship Programme, for which we are now http://www.hivbio.org A PhD and a background in inviting applications. one of epidemiological modelling, molecular evolution Two Advanced Fellowships are available for 3 years, ex- or computational biology is required; some experience tendable with University support to tenure-track sta- in viral evolutionary analysis would be helpful. The tus. Fellows will be emerging leaders in their fields, post is fixed-term up to 14 months from December 1st able to bring further interdisciplinary strengths to the 2008. Centre. Fellows will be expected to propose their own Applications should be made through the University research programme complementary to, and consonant website: http://www.jobs.ed.ac.uk, quoting reference with, the new Centre. 3009991, by 10th November 2008. Three 2-year Research Fellowships will also be ap- – The University of Edinburgh is a charitable body, pointed. Fellows will have, typically, up to 4 years? registered in Scotland, with registration number postdoctoral experience and may take up one of the SC005336. collaborative projects outlined on the web site http:/- /sbsweb2.bio.ed.ac.uk/iie/fellowships. Alternatively, [email protected] [email protected] candidates may propose their own research plan in con- junction with two different Centre laboratories. Fellows will be encouraged to continue their work at the Centre beyond this time through competitive applications for external Fellowship funding. UFlorida EvolutionarySystemsBiol The deadline for applications for 2-year Fellowships is 13 November 2008, and for the Advanced Fellowships 27 November 2008. Post-Doctoral researchers in evolutionary systems biol- – Dr. Tom Little, Wellcome Trust Senior Research Fel- ogy/statistical genomics/bioinformatics low Institute of Evolutionary Biology University of Ed- There are openings for three postdoctoral research as- inburgh Kings Buildings, West Mains Rd EH9 3JT sociates at the University of Florida Genetics Institute. – The University of Edinburgh is a charitable body, The successful applicants will be able to choose among registered in Scotland, with registration number a variety of collaborative projects focused on the anal- November 1, 2008 EvolDir 103 ysis of genomic and proteomic data and the develop- ing applications for a Post Doctoral Associate posi- ment of tools to facilitate analytical approaches to large tion to work on developing computational tools and datasets. Some of the projects include: association a database for horizontal gene transfer prediction and mapping in human populations, allele specific expres- analysis in microbial genomes in a new NSF “Tree of sion in Drosophila, comparative genomics of pathogenic Life” project. The successful applicant should have a bacteria, integration of genomic and proteomic data Ph.D degree in computational biology, evolutionary bi- in host pathogen interactions, association mapping in ology, or computer science with a good understanding complex pedigrees. Skills expected include: knowledge of biology, and should have substantial experience in and interest in Genetics (particularly Evolutionary Ge- computer programming and knowledge in database de- netics) and Genomics, as well as substantial quantita- velopment. Previous experience in phylogenomics tool tive skill. Candidates with PhDs in Evolutionary Biol- development will be a big plus. Interested applicants ogy/Genetics/Statistics/Computer Science/ Engineer- should contact Prof. Ying Xu via [email protected]. ing will be considered for this position. The work will be Yanbin Yin
UGeorgia EvolutionaryBiology
UGeorgia The Computational Systems Biology Lab (http://- PlantFungalEvolutionaryEcol csbl.bmb.uga.edu) of the University of Georgia is seek- 104 EvolDir November 1, 2008
I am seeking to fill a post-doctoral position to con- Atlantic and North Pacific faunas. tribute to ongoing research efforts to understand the The project will use molecular marker data for a com- role of the mycorrhiza in determining the popula- parative phylogeographic analysis of several fish and tion, community, and evolutionary ecology of long-lived invertebrate taxa, to assess the history of trans-Arctic herbaceous perennial plants. The ideal candidate will connections during the Pleistocene. The research will have broad expertise in ecological genetics, will be ex- address the generality of the hypothesis that the amphi- pected to develop protocols for ongoing projects, will boreal populations in the two oceans were repeatedly serve as a mentor for students in the lab, and will be reconnected by invasion events across the polar seas, expected to develop novel projects in plant/fungal evo- and that hybridization following such contacts of dif- lutionary ecology. ferentiated sister lineages or taxa may have been im- Requirements include strong laboratory skills and ex- portant in determining the assembly and diversity of pertise with DNA-based molecular methods (particu- current boreal communities - or will be in the future, larly DNA-based genotyping protocols, including but following the ongoing warming of polar environments. not limited to microsatellites and sequencing), strong We are looking for an enthusiastic individual keen to communications skills, expertise with current analyti- work in the molecular laboratory and curious about cal methods and theory, and a strong interest in evo- exploring the signals of biogeographic history in the lutionary ecology. While not required, expertise and genomes of marine organisms, using current tools of experience with plant breeding or quantitative genetics data analysis. The post-doc is expected to have solid will also be viewed as positive assets. background in DNA techniques, and good organiza- Responsibilities will include the development and main- tional skills, to assume responsibilities in molecular tenance of research projects, laboratory work, supervi- marker development and in arranging sample collection, sion of graduate and undergraduate students, presen- including fieldwork. tation at research conferences, and field work (local, The position is in the research group of Dr. Risto Vain- national, and international). Starting date is 1 July ola, based at the Finnish Museum of Natural History 2009, though later dates may be negotiated. Salary is and at the Molecular Ecology and Systematics labora- commensurate upon experience. The appointment is tory of the University of Helsinki. The project is funded expected to last for 2-3 years. by the Academy of Finland. Applicants should have completed a PhD degree in The position will be available for two years, to start plant biology, ecology, evolutionary biology, molecular in the first half of 2009. Deadline for applications is biology, or a related field by the start of the appoint- November 20, 2008. ment. Informal inquiries are welcome (send e-mail to: [email protected]). To apply, please send a cover let- For further information on the project and the research ter, your CV, and names and full contact info for three group, contact details, and for instructions on how references to: Dr. Richard P. Shefferson, University of to apply, please visit http://www.fmnh.helsinki.fi/- Georgia, Odum School of Ecology, 140 E. Green St., vainola. Athens, GA 30602, USA. E-mail: [email protected]. Dr. Risto Vainola Finnish Museum of Nat- – Richard P. Shefferson, Ph.D. Assistant Professor of ural History, POB 17 FIN-00014 University of Evolutionary Ecology Odum School of Ecology Univer- Helsinki, Finland vce +358 44 588 6868 fax sity of Georgia 140 E. Green St. Athens, GA 30602 +358 9 191 28888 risto.vainola@helsinki.fi http://- USA www.fmnh.helsinki.fi/vainola . risto.vainola@helsinki.fi risto.vainola@helsinki.fi Web: www.sheffersonlab.com [email protected]
UKonstanz MolecularEvolution UHelsinki MarinePhylogeography
Ph.D. and Postdoc Positions ˆamolecular evolution, ge- We are inviting applications for a postdoctoral posi- nomics & bioinformatics tion at the University of Helsinki, Finland, to work in a At the University of Konstanz we expect to have a post- project that will address the connections between North doc and a Ph.D. position available starting on January November 1, 2008 EvolDir 105
1, 2009 in the lab of Prof. Axel Meyer at the Depart- Germany email: [email protected] ment of Evolutionary Biology and Zoology at the Uni- fon + 49 (0)7531 88 4163 fax + 49 (0)7531 88 3018 versity of Konstanz in Germany. secretary: [email protected] tel. + 49 Through funding of the University of Konstanz by the (0)7531 88 3069 ˆaexcellence initiativeˆaof the German government we are in the process of establishing a genomics/proteomics www.evolutionsbiologie.uni-konstanz.de Axel Meyer center that will include microarray facilities and second
UParisSud Metagenomics UppsalaU EvolutionaryGenomics
Postdoctoral research fellowship in evolutionary ge- nomics at Uppsala University, Sweden METAGENOMICS - 3-YEAR POSTDOCTORAL PO- SITION AT THE UNIVERSITY OF PARIS-SUD A postdoctoral fellowhip is available at the Department (FRANCE) of Evolutionary Biology at Uppsala University. The postdoc is in the research-group of Dr. Hanna Johan- A 3-year postdoctoral contract funded by the French nesson, and will focus on the evolution of the mating- “National Research Agency ANR” is available from type chromosome in the filamentous ascomycete Neu- January 2009 to participate in the research project rospora tetrasperma. The fellowhip is for one year, with EVOLDEEP (Evolutionary and population genomics a high likelihood of extension. of deep-sea uncultivated microorganisms) coordinated by Purificaci´onL´opez-Garc´ıa.Work will be carried out Recent studies have revealed that chromosomal regions in the “Microbial diversity and evolution” team in the controlling sexual identity in the fungal kingdom share University of Paris-Sud at Orsay (http://www.ese.u- features with the more complex sex chromosomes of psud.fr/microbiologie/), which is located 25 km south algae, plants and animals. Our group have combined from Paris, 30 min by suburban train. gene divergence data, classical genetics and phyloge- netics to show that the mating-type chromosome of N. The project aims at reconstructing and comparing com- tetrasperma resemble the sex chromosomes in that re- plete genome scaffolds of uncultured deep-sea plank- combination suppression involved more than one evo- tonic archaea (both crenarchaeota and euryarchaeota) lutionary event, covers the majority of the chromosome from genome fragments archived in metagenomic fos- and is flanked by distal regions with obligate crossovers. mid libraries in our lab. The work will include the Now, we aim at exploring the system further by using identification of archaeal fosmids in existing libraries a bioinformatics and/or a molecular biology approach. that will be completely sequenced, providing the ba- This postdoc project can be developed after the inter- sis for scaffold genome assembly. Genome scaffolds will est of the applicant, and could involve revealing struc- be annotated and analysed, with especial attention to tural or autosomal gene influence on the recombination comparative analyses in order to make inferences about block, and the evolutionary history of the chromosome the metabolism and the evolution (phylogeny, popula- in different phylogenetic lineages of the species. tion genomics, recombination, horizontal gene transfer) of these uncultured archaeal lineages. The Program in Evolutionary Biology (http://- www.egs.uu.se/evbiol/ index.html) is situated in the The net salary will be around 2000 euros (including so- Evolutionary Biology Centre in central Uppsala. The cial security and medical assistance) depending on the working atmosphere is international with English as applicant’s experience. working language. The Evolutionary Biology Centre We are seeking motivate candidates with good experi- constitutes an exciting arena for multidisciplinary re- ence in genome assembly, annotation and comparative search in evolutionary biology in a broad sense, with re- genomics. Skills in programming and database man- search programs including ecology, systematics, genet- agement will be appreciated. ics, genomics, and developmental biology. Uppsala Uni- versity is the oldest university in Scandinavia and the Candidates should send a CV, a cover letter and the city of Uppsala is a vibrant student town with beauti- names of at least two referees to: ful surroundings conveniently situated 40 minutes with Purificaci´onLOPEZ-GARCIA train from Stockholm. Unit´ed’Ecologie, Syst´ematique et Evolution - CNRS Required qualifications for applicants are 1) a PhD in UMR8079 Universit´e Paris-Sud 11, bˆatiment 360, Biology, Genetics, Evolutionary Biology, Microbiology, 91405 Orsay Cedex, France Phone: (+33) 1 69 15 or related field, 2) experience in one or several of the fol- 76 08; E-mail: [email protected] http://www.ese.u- lowing areas: molecular biology, bioinformatics, popu- psud.fr/microbiologie/ “puri.lopez”
VassarCollege Plasticity
UTours BioinformaticsVirusEvolution Post-doctoral Position: Molecular mechanisms of phe- notypic plasticity Start-Date: January/February 2009 Evolution, Virus, Comparative Genomics, Bioinformat- Nutrition and Life History Transitions: Condition- ics, France dependent stress responses and metamorphic timing in amphibians University of Tours, France Insect Biology Research In- stitute (IRBI) UMR CNRS 6035 This post-doctoral position involves investigating how nutrition affects stress response and developmental tim- Postdoctoral Research Associate in Bioinformatics ing in amphibian tadpoles, and how nutritional state of Comparative genomics of polydnaviruses and insect the tadpole affects the fitness consequences after meta- viruses Starting Salary 30,000 per annum; Starting morphosis. This project will involve field and labo- from January 2009; initially 2 years funding Closing ratory experiments and molecular, physiological, and date for application: 10th October 2008 behavioral analyses to characterize the interactions be- We are seeking a highly motivated candidate to fill the tween neuroendocrine energy balance indicators (e.g., post of research associate within the Institute for Insect neuropeptide Y, leptin) and stress axis in an ecological Biology Research at the University of Tours (France). and evolutionary context. In addition, applicants will The successful candidate will join a new team lead by have the opportunity to conduct related experiments Dr Elisabeth Herniou and funded by the European Re- according to interest, and obtain experience teaching search Council (ERC) to work on the adaptation of and advising undergraduates at a liberal arts college virus genomes to insect immunity. You will conduct setting. This post- doctoral position will also will in- scientific research on viral genomic evolution associ- volve interactions with the Cary Institute of Ecosys- ated with the adaptation to insect hosts. You will tems Studies located in nearby Millbrook, NY. be required to apply a number of bioinformatics tech- Anyone graduating with a Ph.D. by Dec. 2008 or May niques including genome sequence annotation, database 2009 with a background in behavioral ecology or evolu- management, comparative genomics and phylogenetics. tionary biology (particularly in the areas of phenotypic You will perform independent and original research and plasticity or evolution of life histories), who is inter- prepare results for publication to refereed journals. To ested in gaining molecular biology skills and broaden- be considered for this position, you will hold a PhD ing her/his areas of expertise is encouraged to apply. or equivalent level of professional qualification in bioin- Experience in experimental design, statistics, or field- formatics or evolutionary biology. You will also have work is desirable but not necessary. Specific analytical a solid background in bioinformatics and comparative tools will include real-time qPCR, in situ hybridiza- genomics and a strong interest in evolutionary biology. tion, immunocytochemistry, radioimmunoassay, behav- Fluency in French is not essential but would be a bonus. ioral bioassays. Funding is provided by the National Please contact Dr Elisabeth Herniou Science Foundation and is available for up to 2.5 years. November 1, 2008 EvolDir 111
Vassar College is located in Poughkeepsie, NY (1.5 hr yses. We are searching for an individual with strong from NYC), attended by approximately 2,400 under- bioinformatic sills, a solid background in biology, and graduates and is one of the leading liberal arts col- excellent communication aptitude. leges in the USA. If interested, contact Erica Crespi: The post is based at the Institute of Population Ge- [email protected]. netics at the VUW, Vienna. The Vienna Research Erica Crespi
WorkshopsCourses
ImperialCollegeLondon AntibioticResistanceEvolution UColorado PhDstudents PlantHomology Jan16-18 112 Jan14-15 ...... 111 UMichgan SpeciesTrees Jan10-11 ...... 113 Portal NewMexico StatisticalPhylogeography . . . . .112 UMichigan SpeciesTrees Jan10-11 ...... 113 UAuckland StatisticalGenetics Dec9-16 Registra- tionOct27 ...... 112
First announcement - EPSRC Workshop: Evolution of Antibiotic Resistance, 14-15 January 2009, Imperial College London, UK ImperialCollegeLondon This EPSRC funded workshop will bring together ex- AntibioticResistanceEvolution perts in genotyping, experimental evolution and math- ematical modeling. For more details and to register Jan14-15 please go to: 112 EvolDir November 1, 2008 http://www.mmems.org/ For all scientific enquiries Course Fees Course fees (including room & board at contact Ivana Gudelj (i.gudelj at imperial.ac.uk). For the SWRS) will be $900 administrative enquiries e-mail Ann Linfield (masadl at Course Web-page: http://www.lsu.edu/faculty/- bath.ac.uk) carstens/SWRSstatphylo.html – [email protected] [email protected] Bryan C. Carstens Assistant Professor Department of Biological Sciences Louisiana State University mail 202 Life Sciences Building Louisiana State Univer- sity Baton Rouge, LA 70803 USA Portal NewMexico e-mail [email protected] [email protected] StatisticalPhylogeography web http://www.lsu.edu/faculty/carstens/ office A114 Life Sciences Annex (225) 578-0960 lab A153 Life Sciences Annex (225) 578-4918 Course Advertisement: “Bryan C. Carstens”
Workshop at the University of Michigan, Jan 10-11, those attending the computer training (on Jan 11; see 2009 website for programs that will be covered). To facili- tate broad and diverse participation in this important Estimating Species Trees: a Phylogenetic Paradigm for the 21st Century workshop, funding is available to offset transportation and lodging costs (i.e., $500 for those from the US and Recent computational and modeling advances have pro- $1000 for international participants - see website for duced methods for estimating species trees directly. Ac- details on how to apply). curate estimates of phylogenetic relationships can be extracted from genetic data with these new approaches, Co-organizers: L. Lacey Knowles, University of Michi- sometimes with less data, by directly modeling the gan, and Laura S. Kubatko, Ohio State University causes of discordance in topology and branch lengths Location of the workshop: University of Michigan, Jan- among gene trees. Such inferences are commonly im- uary 10-11, 2009. possible under the traditional phylogenetic paradigm Invited speakers for workshop: Liang Liu, Harvard Uni- because of the potential for the idiosyncrasies of gene versity Laura Kubatko, Ohio State University Dennis trees to obscure the actual history of species divergence. Pearl, Ohio State University CA˜ c lcile AnA˜ c , Univer- We are offering this workshop to not only increase the sity of Wisconsin James Degnan, University of Canter- visibility and use of these methods, but also address a bury L. Lacey Knowles, University of Michigan Luay number of significant challenges to estimating species Nakhleh, Rice University Karen Cranston, University trees, to assure that the advantages these methods of- of Arizona Bret Larget, University of Wisconsin Robb fer reach a broad community of users. The goals of the Brumsfield, Louisiana State Univ. Lisle Gibbs, Ohio workshop are to: (i) provide an understanding of the State University Scott Edwards, Harvard University theoretical underpinnings of current methodology, (ii) Catherine Linnen, Harvard University Natalia Belfiore, present empirical examples demonstrating the utility of University of California, Berkeley current methodology as well as its limitations, and (iii) For more information please contact: Dr. L. Lacey offer instruction on the technical aspects involved in us- Knowles, [email protected] ing current software. This will be accomplished through the combination of a series of lectures (day one) and This workshop has been made possible by funds gener- hands-on computer training (day two). Participation ously provided by the Museum of Zoology, University in the workshop requires registration (go to http://- of Michigan. www.ummz.lsa.umich.edu/sptree.html) and is free for “Knowles, L”
Instructions
Instructions: To be added to the EvolDir mailing list please send an email message to [email protected]. At this time provide a binary six letter code that determines which messages will be mailed to you. These are listed in the same order as presented here — Conferences; Graduate Student Positions; Jobs; Other; Post-doctoral positions; WorkshopsCourses. For example to receive the listings that concern conferences and post-doctoral positions this would be 100010. Messages are categorized on the basis of their subject headings. If this subject heading is not successfully parsed, the message will be sent to me at [email protected]. In addition, if it originates from ‘blackballed’ addresses it will be sent to me at [email protected]. These messages will only be read and dealt with when I have time. The code 000000 has all channels turned off and hence gets only a once monthly notifcation of the availability of a monthly review pdf file. To be removed from the EvolDir mailing list please send an email message to [email protected]. Note that ‘on vacation’, etc, style messages are automatically filtered and should not be transmitted to the list (I hope), but should you wish to avoid the e-mail’s your code can be temporarily changed to 000000. To send messages to the EvolDir direct them to the email [email protected]. Do not include November 1, 2008 EvolDir 115 encoded attachments and do not send it as Word files, as HTML files, as LATEX files, Excel files, etc. . . . plain old ASCII will work great and can be read by everyone. Add a subject header that contains the correct category “Conference:, Graduate position:, Job:, Other:, Postdoc:, Workshop:” and then the message stands a better chance of being correctly parsed. Note that the colon is mandatory. The message will be stored until the middle of the night (local time). At a predetermined time, the collected messages will be captured and then processed by programs and filters. If the message is caught by one of the filters (e.g. a subject header is not correctly formated) the message will be send to me at [email protected] and processed later. In either case, please do not expect an instant response.
Afterward
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