Aqueous Phase Photochemistry of Α-Keto Acids As a Function of Ph
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Detection and Formation Scenario of Citric Acid, Pyruvic Acid, and Other Possible Metabolism Precursors in Carbonaceous Meteorites
Detection and formation scenario of citric acid, pyruvic acid, and other possible metabolism precursors in carbonaceous meteorites George Coopera,1, Chris Reeda, Dang Nguyena, Malika Cartera, and Yi Wangb aExobiology Branch, Space Science Division, National Aeronautics and Space Administration-Ames Research Center, Moffett Field, CA 94035; and bDevelopment, Planning, Research, and Analysis/ZymaX Forensics Isotope, 600 South Andreasen Drive, Suite B, Escondido, CA 92029 Edited by David Deamer, University of California, Santa Cruz, CA, and accepted by the Editorial Board July 1, 2011 (received for review April 12, 2011) Carbonaceous meteorites deliver a variety of organic compounds chained three-carbon (3C) pyruvic acid through the eight-carbon to Earth that may have played a role in the origin and/or evolution (8C) 7-oxooctanoic acid and the branched 6C acid, 3-methyl- of biochemical pathways. Some apparently ancient and critical 4-oxopentanoic acid (β-methyl levulinic acid), Fig. 1, Table S1. metabolic processes require several compounds, some of which 2-methyl-4-oxopenanoic acid (α-methyl levulinic acid) is tenta- are relatively labile such as keto acids. Therefore, a prebiotic setting tively identified (i.e., identified by mass spectral interpretation for any such individual process would have required either a only). As a group, these keto acids are relatively unusual in that continuous distant source for the entire suite of intact precursor the ketone carbon is located in a terminal-acetyl group rather molecules and/or an energetic and compact local synthesis, parti- than at the second carbon as in most of the more biologically cularly of the more fragile members. -
Transamination What Is Transamination? Subhadipa 2020 • Important Method of Nitrogen Metabolism of Amino Acids
Subhadipa 2020 Transamination What is Transamination? Subhadipa 2020 • Important method of nitrogen metabolism of amino acids. • Transamination is the transfer of an amine group from an amino acid to a keto acid (amino acid without an amine group), thus creating a new amino acid and keto acid. • Transamination reactions combine reversible amination and deamination, and they mediate redistribution of amino groups among amino acids. • Transaminases (aminotransferases) are widely distributed in human tissues and are particularly active in heart muscle, liver, skeletal muscle, and kidney. • The general reaction of transamination is: Concerned enzyme • The reaction is catalyzed by transaminase or amino transferase. • Enzymes act on L-amino acid but not on D-isomers. • They occur both mitochondria and cytosol as separate enzyme. • There are many transferases, each acts on a particular amino acid and a particular keto acid. Amino and keto acid • All naturally occurring amino acids undergo transamination. • Exceptions include basic amino acids lysine, hydroxyl amino acids, serine and threonine and heterocyclic amino acids proline and hydroxyl-proline. • Keto acids like pyruvic acid, oxaloacetic acid and α- ketoglutaric acid are commonly involved. • Glyoxylate and glutamic γ semialdehyde may also act as amino- receptors in transamination. E-PLP Complex Subhadipa 2020 All transaminase reactions have the same mechanism and use pyridoxal phosphate (a derivative of vitamin B6). Pyridoxal phosphate is linked to the enzyme by formation of a Schiff base between its aldehyde group and the ε-amino group of a specific lysyl residue at the active site and held noncovalently through its positively charged nitrogen atom and the negatively charged phosphate group. -
Chem 352 - Lecture 10, Part II Citric Acid Cycle
Chem 352 - Lecture 10, Part II Citric Acid Cycle Question for the Day: One of the observations that led Hans Krebs to discover the citric acid cycle, was that dicarboxylic acids, such as fumarate and succinate, had a catalytic effect on the oxidation of glucose to CO2 and H2O by muscle tissue. Explain his observation. Introduction Chem 352, Lecture 10, Part II - Citric Acid Cycle 2 Introduction 13.1 Overview of Pyruvate Oxidation and the Citric Acid Cycle 13.2 Pyruvate Oxidation: A Major Entry Route for Carbon in the Citric Acid Cycle 13.3 The Citric Acid Cycle 13.4 Stoichiometry and Energetics of the Citric Acid Cycle 13.5 Regulation of Pyruvate Dehydrogenase and the Citric Acid Cycle 13.8 Anapleoritic Sequences: The Need to Replace Cycle Intermediates. 13.9 The Glyoxylate Cycle: An Anabolic Variant of the Citric Acid Cycle Chem 352, Lecture 10, Part II - Citric Acid Cycle 2 Introduction Chem 352, Lecture 10, Part II - Citric Acid Cycle 3 Introduction Chem 352, Lecture 10, Part II - Citric Acid Cycle 3 13.1 Overview of Pyruvate Oxidation and the Citric Acid Cycle Overview Chem 352, Lecture 10, Part II - Citric Acid Cycle 5 Overview The citric acid cycle has both catabolic and anabolic functions. • Catabolic - Oxidizes the 2-carbon acetyl group to CO2 and produces reduced nucleotides (NADH + H+ and FADH2) Chem 352, Lecture 10, Part II - Citric Acid Cycle 5 Overview The citric acid cycle has both catabolic and anabolic functions. • Catabolic - Oxidizes the 2-carbon acetyl group to CO2 and produces reduced nucleotides (NADH + H+ and FADH2) • Anabolic - The citric acid cycle intermediates serve as starting material for the biosynthesis of amino acids, heme groups, glucose, et al. -
Is There a Role for Ketoacid Supplements in the Management of CKD? Anuja P
Perspective Is There a Role for Ketoacid Supplements in the Management of CKD? Anuja P. Shah, MD,1 Kamyar Kalantar-Zadeh, MD, PhD,2 and Joel D. Kopple, MD1,3 Ketoacid (KA) analogues of essential amino acids (EAAs) provide several potential advantages for people with advanced chronic kidney disease (CKD). Because KAs lack the amino group bound to the a carbon of an amino acid, they can be converted to their respective amino acids without providing additional nitrogen. It has been well established that a diet with 0.3 to 0.4 g of protein per kilogram per day that is supplemented with KAs and EAAs reduces the generation of potentially toxic metabolic products, as well as the burden of potassium, phosphorus, and possibly sodium, while still providing calcium. These KA/EAA-supplemented very-low-protein diets (VLPDs) can maintain good nutrition, but the appropriate dose of the KA/EAA supplement has not been established. Thus, a KA/EAA dose-response study for good nutrition clearly is needed. Similarly, the composition of the KA/EAA supplement needs to be reexamined; for example, some KA/EAA preparations contain neither the EAA phenylalanine nor its analogue. Indications concerning when to inaugurate a KA/EAA- supplemented VLPD therapy also are unclear. Evidence strongly suggests that these diets can delay the need for maintenance dialysis therapy, but whether they slow the loss of glomerular filtration rate in patients with CKD is less clear, particularly in this era of more vigorous blood pressure control and use of angiotensin/ aldosterone blockade. Some clinicians prescribe KA/EAA supplements for patients with CKD or treated with maintenance dialysis, but with diets that have much higher protein levels than the VLPDs in which these supplements have been studied. -
Amino Acid Catabolism
Amino Acid Catabolism • Dietary Proteins • Turnover of Protein • Cellular protein • Deamination • Urea cycle • Carbon skeletons of amino acids Amino Acid Metabolism •Metabolism of the 20 common amino acids is considered from the origins and fates of their: (1) Nitrogen atoms (2) Carbon skeletons •For mammals: Essential amino acids must be obtained from diet Nonessential amino acids - can be synthesized Amino Acid Catabolism • Amino acids from degraded proteins or from diet can be used for the biosynthesis of new proteins • During starvation proteins are degraded to amino acids to support glucose formation • First step is often removal of the α-amino group • Carbon chains are altered for entry into central pathways of carbon metabolism Dietary Proteins • Digested in intestine • by peptidases • transport of amino acids • active transport coupled with Na+ Protein Turnover • Proteins are continuously synthesized and degraded (turnover) (half-lives minutes to weeks) • Lysosomal hydrolysis degrades some proteins • Some proteins are targeted for degradation by a covalent attachment (through lysine residues) of ubiquitin (C terminus) • Proteasome hydrolyzes ubiquitinated proteins Turnover of Protein • Cellular protein • Proteasome degrades protein with Ub tags • T 1/2 determined by amino terminus residue • stable: ala, pro, gly, met greater than 20h • unstable: arg, lys, his, phe 2-30 min Ubibiquitin • Ubiquitin protein, 8.5 kD • highly conserved in yeast/humans • carboxy terminal attaches to ε-lysine amino group • Chains of 4 or more Ub molecules -
Why Are Branched-Chain Amino Acids Increased in Starvation and Diabetes?
nutrients Review Why Are Branched-Chain Amino Acids Increased in Starvation and Diabetes? Milan Holeˇcek Department of Physiology, Faculty of Medicine in Hradec Králové, Charles University, Šimkova 870, 50003 Hradec Králové, Czech Republic; [email protected] Received: 24 September 2020; Accepted: 7 October 2020; Published: 11 October 2020 Abstract: Branched-chain amino acids (BCAAs; valine, leucine, and isoleucine) are increased in starvation and diabetes mellitus. However, the pathogenesis has not been explained. It has been shown that BCAA catabolism occurs mostly in muscles due to high activity of BCAA aminotransferase, which converts BCAA and α-ketoglutarate (α-KG) to branched-chain keto acids (BCKAs) and glutamate. The loss of α-KG from the citric cycle (cataplerosis) is attenuated by glutamate conversion to α-KG in alanine aminotransferase and aspartate aminotransferase reactions, in which glycolysis is the main source of amino group acceptors, pyruvate and oxaloacetate. Irreversible oxidation of BCKA by BCKA dehydrogenase is sensitive to BCKA supply, and ratios of NADH to NAD+ and acyl-CoA to CoA-SH. It is hypothesized that decreased glycolysis and increased fatty acid oxidation, characteristic features of starvation and diabetes, cause in muscles alterations resulting in increased BCAA levels. The main alterations include (i) impaired BCAA transamination due to decreased supply of amino groups acceptors (α-KG, pyruvate, and oxaloacetate) and (ii) inhibitory influence of NADH and acyl-CoAs produced in fatty acid oxidation on citric cycle and BCKA dehydrogenase. The studies supporting the hypothesis and pros and cons of elevated BCAA concentrations are discussed in the article. Keywords: insulin; insulin resistance; pyruvate; glucose; alanine; obesity 1. -
Some Pyridoxal Analogs and Their Transamination with Amino Acids Jerry David Albert Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1964 Some pyridoxal analogs and their transamination with amino acids Jerry David Albert Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Biochemistry Commons Recommended Citation Albert, Jerry David, "Some pyridoxal analogs and their transamination with amino acids " (1964). Retrospective Theses and Dissertations. 3833. https://lib.dr.iastate.edu/rtd/3833 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. This dissertation has been 65-4589 microfilmed exactly as received ALBERT, Jerry David,1937- SOME PYRIDOXAL ANALOGS AND THEIR TRANS AMINATION WITH AMINO ACIDS. Iowa State University of Science and Technology Ph.D., 1964 Chemistry, biological University Microfilms, Inc., Ann Arbor, Michigan SŒIE PYRIDOXAL ANALOGS AND THEIR TRANSAMINATION WITH AMINO ACIDS by Jerry David Albert A Dissertation Submitted to the Graduate Faculty in Partial Fulfillment of The Requirements for the Degree of DOCTOR OF PHILOSOPHY Major Subject: Biochemistry Approved: Signature was redacted for privacy. In Charge of Major Work Signature was redacted for privacy. Keaa or major Department -
Lipid and Protein Metabolism
Physiology Unit 1 METABOLISM OF LIPIDS AND PROTEINS Alternate Fuel Sources • When glucose levels are low • Proteins and Triglycerides will be metabolized • Tissues will use different fuel sources depending on: – The metabolic activity of the tissue – Fuel sources available • Diet • Fasting Proteins • Proteins are digested to amino acids in the stomach and small intestine by proteases • Amino acids used to: – Make ATP – Biosynthesis • Non-essential amino acids • Metabolic intermediates • Glucose • Fat • Intracellular proteins Amino Acids Amino Acids as Fuel Glucogenic Amino Acids Ketogenic Amino Acids • Amino acids converted to • Amino acids degraded to α keto acids (pyruvate) acetyl-CoA • Pyruvate • Produced by oxidative – Converted to glucose deamination • Occurs in the liver • Acetyl-CoA: – Production increases during – Is the precursor of ketones catabolysis (fat and muscle – Used to make fatty acids tissue breakdown) – Used to make ATP • Produced by • Can not be converted to transamination and glucose (WHY?) oxidative deamination Transamination • Make another type of amino acid by transferring an amine (NH2) from an existing amino acid to a keto acid • Example ➜ – An amine group is transferred from L-alanine to α-ketoglutarate to make pyruvate and L-glutamate Amine group is BLUE Oxidative Deamination • The amine (NH2) from an amino acid is removed (deamination) • Oxygen replaces the nitrogen – Oxygen comes from splitting H2O • The removed amine group gives rise to NH3 (then to urea) • The product is a α keto acid and/or a ketone Glutamate -
MITOCW | 23. TCA Cycle II
MITOCW | 23. TCA Cycle II [SQUEAKING] [RUSTLING] [CLICKING] MATTHEW Hello, everybody. Last time, I introduced the idea of the TCA cycle, tricarboxylic acid cycle. Also known as the VANDER citric acid cycle, because citric acid is a tricarboxylic acid, as you'll see later today. Also known as the Krebs HEIDEN: cycle, named after Hans Krebs, who discovered it in the early part of the last century. The TCA cycle is the series of reactions that occurs in the mitochondrial matrix and it allows the complete oxidation of two carbon units, derived from many things, including pyruvate, derived from glucose and glycolysis and enables the complete oxidation of that carbon to CO2. Now, it's a cycle because those two carbon units from pyruvate or other sources enter the cycle, combine with 4- carbon oxaloacetate, and combine to make 6-carbon citrate. Hence the citric acid cycle, or TCA cycle, that is then oxidized back to 4 carbon units, forming a cycle that allows cells to release lots of energy. Complete oxygen enables, ultimately, complete oxidation of glucose to CO2. We've talked many times how this releases energy. And it also generates lots of intermediates for the cell that can be used to make other stuff. Last time, I alluded to the fact that citrate can be used, say, to make fatty acids. Today, what I want to do is I want to dive into the details of how this TCA cycle occurs and the consequences of the way it works, and how that affects other aspects of metabolism. -
Amino Acids Degradation and Synthesis
Amino acids degradation and synthesis Shyamal D. Desai Ph.D. Department of Biochemistry & Molecular Biology MEB. Room # 7107 Phone- 504-568-4388 [email protected] Nitrogen metabolism N2 Atmospheric nitrogen N2 is most abundant but is too inert for use in most biochemical processes. Atmospheric nitrogen is acted upon by bacteria (nitrogen Dietary proteinsfixation) and plants to nitrogen containing compounds. We assimilate these compounds as proteins (amino acids) in our diets. Amino acids Conversion of nitrogen into specialized products α-amino Other nitrogen Lecture III Body proteins groups containing compounds D is po NH4+ L sa e l o c f tu Ni Urea re tro I ge Carbon skeletons n Amino acids synthesis & degradation excreted Lecture II Enters various metabolic pathways Amino acids catabolism Removal of Carbon skeleton α-amino groups 1) Oxaloacetate 2) α-ketoglutarate Urea 3) Pyruvate 4) Fumarate 5) Succinyl coenzyme A (CoA) 6) Acetyl CoA 7) Acetoacetate Enter the metabolic pathways Synthesis of Lipid, Glucose or in the production of energy through their oxidation to CO2 and H2O Essential versus Nonessential Amino Acids Cannot be synthesized de novo, hence, must be supplied in the diet. Synthesized by body Glucogenic and Ketogenic Amino acids Amino acids are classified as glucogenic, ketogenic, or both based on which of the seven intermediates are produced during their catabolism. Glucogenic Ketogenic Amino acids that can be Amino acids that can be converted into glucose converted into ketone bodies through gluconeogenesis through ketogenesis Amino acids whose catabolism yields pyruvate or one of the intermediates of the citric acid cycle are termed glucogenic or glycogenic Amino acids whose catabolism yields either acetoacetate or one of its precursor, (acetyl CoA or acetoacetyl CoA) are termed ketogenic. -
Regulation of Ketone Body Metabolism and the Role of Pparα
International Journal of Molecular Sciences Review Regulation of Ketone Body Metabolism and the Role of PPARα Maja Grabacka 1,*, Malgorzata Pierzchalska 1, Matthew Dean 2 and Krzysztof Reiss 2 1 Department of Food Biotechnology, Faculty of Food Technology, University of Agriculture, ul. Balicka 122, 30-149 Kraków, Poland; [email protected] 2 Neurological Cancer Research, Stanley S. Scott Cancer Center, Louisiana State University Health Sciences Center, 1700 Tulane Ave, New Orleans, LA 70112, USA; [email protected] (M.D.); [email protected] (K.R.) * Correspondence: [email protected]; Tel.: +48-12-662-4796 Academic Editor: Béatrice Desvergne Received: 23 September 2016; Accepted: 7 December 2016; Published: 13 December 2016 Abstract: Ketogenesis and ketolysis are central metabolic processes activated during the response to fasting. Ketogenesis is regulated in multiple stages, and a nuclear receptor peroxisome proliferator activated receptor α (PPARα) is one of the key transcription factors taking part in this regulation. PPARα is an important element in the metabolic network, where it participates in signaling driven by the main nutrient sensors, such as AMP-activated protein kinase (AMPK), PPARγ coactivator 1α (PGC-1α), and mammalian (mechanistic) target of rapamycin (mTOR) and induces hormonal mediators, such as fibroblast growth factor 21 (FGF21). This work describes the regulation of ketogenesis and ketolysis in normal and malignant cells and briefly summarizes the positive effects of ketone bodies in various neuropathologic conditions. Keywords: β hydroxybutyrate; 3-hydroxy-3-methylglytaryl-CoA synthetase 2 (HMGCS2); fenofibrate; melanoma; glioma; fasting 1. Introduction Adaptation to limited nutritional resources in the environment requires the development of mechanisms that enable temporal functioning in a state of energy deficiency at both systemic and cellular levels. -
The Metabolism of D-Glucaric Acid in Bacillus Megaterium
Loyola University Chicago Loyola eCommons Master's Theses Theses and Dissertations 1969 The Metabolism of D-Glucaric Acid in Bacillus Megaterium Brahma Shanker Sharma Loyola University Chicago Follow this and additional works at: https://ecommons.luc.edu/luc_theses Part of the Medicine and Health Sciences Commons Recommended Citation Sharma, Brahma Shanker, "The Metabolism of D-Glucaric Acid in Bacillus Megaterium" (1969). Master's Theses. 2346. https://ecommons.luc.edu/luc_theses/2346 This Thesis is brought to you for free and open access by the Theses and Dissertations at Loyola eCommons. It has been accepted for inclusion in Master's Theses by an authorized administrator of Loyola eCommons. For more information, please contact [email protected]. This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 License. Copyright © 1969 Brahma Shanker Sharma THE METABOLISM OF 0-GLUCARIC ACID IN BACILLUS MB;MFRIUM KM BY Brahma Shanker Shanna • Department of M1crob1ology Stritch School of Med1c1ne . LIBRARY LOYOLA UNIVERSiTY MEDICAL CENTER A Thesis Submitted to the Faculty of the Graduate School of Loyola University 1n Partial Fulfillment of the Requirements for the Degree of Master of Science 1969 ACKNOWLEDGMENTS The author wishes to e.xf)ress h1s sincere appreciation to Dr. Harold J. Blumenthal. Pr6fessor and Chairman. Depart ment of Microbiology, for h1s guidance in this 1nvest1gat1on. TABLE OF CONTENTS tage 1.0 INTRODUCTION ••••••••••••••••••••••••••••••••••••••••••••••••••• 1 1.01 Occt.r"rence of O-g1ucar1c