Cell Surface–Anchored Serine Proteases in Cancer Progression and Metastasis
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Molecular Markers of Serine Protease Evolution
The EMBO Journal Vol. 20 No. 12 pp. 3036±3045, 2001 Molecular markers of serine protease evolution Maxwell M.Krem and Enrico Di Cera1 ment and specialization of the catalytic architecture should correspond to signi®cant evolutionary transitions in the Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, Box 8231, St Louis, history of protease clans. Evolutionary markers encoun- MO 63110-1093, USA tered in the sequences contributing to the catalytic apparatus would thus give an account of the history of 1Corresponding author e-mail: [email protected] an enzyme family or clan and provide for comparative analysis with other families and clans. Therefore, the use The evolutionary history of serine proteases can be of sequence markers associated with active site structure accounted for by highly conserved amino acids that generates a model for protease evolution with broad form crucial structural and chemical elements of applicability and potential for extension to other classes of the catalytic apparatus. These residues display non- enzymes. random dichotomies in either amino acid choice or The ®rst report of a sequence marker associated with serine codon usage and serve as discrete markers for active site chemistry was the observation that both AGY tracking changes in the active site environment and and TCN codons were used to encode active site serines in supporting structures. These markers categorize a variety of enzyme families (Brenner, 1988). Since serine proteases of the chymotrypsin-like, subtilisin- AGY®TCN interconversion is an uncommon event, it like and a/b-hydrolase fold clans according to phylo- was reasoned that enzymes within the same family genetic lineages, and indicate the relative ages and utilizing different active site codons belonged to different order of appearance of those lineages. -
Serine Proteases with Altered Sensitivity to Activity-Modulating
(19) & (11) EP 2 045 321 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 08.04.2009 Bulletin 2009/15 C12N 9/00 (2006.01) C12N 15/00 (2006.01) C12Q 1/37 (2006.01) (21) Application number: 09150549.5 (22) Date of filing: 26.05.2006 (84) Designated Contracting States: • Haupts, Ulrich AT BE BG CH CY CZ DE DK EE ES FI FR GB GR 51519 Odenthal (DE) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • Coco, Wayne SK TR 50737 Köln (DE) •Tebbe, Jan (30) Priority: 27.05.2005 EP 05104543 50733 Köln (DE) • Votsmeier, Christian (62) Document number(s) of the earlier application(s) in 50259 Pulheim (DE) accordance with Art. 76 EPC: • Scheidig, Andreas 06763303.2 / 1 883 696 50823 Köln (DE) (71) Applicant: Direvo Biotech AG (74) Representative: von Kreisler Selting Werner 50829 Köln (DE) Patentanwälte P.O. Box 10 22 41 (72) Inventors: 50462 Köln (DE) • Koltermann, André 82057 Icking (DE) Remarks: • Kettling, Ulrich This application was filed on 14-01-2009 as a 81477 München (DE) divisional application to the application mentioned under INID code 62. (54) Serine proteases with altered sensitivity to activity-modulating substances (57) The present invention provides variants of ser- screening of the library in the presence of one or several ine proteases of the S1 class with altered sensitivity to activity-modulating substances, selection of variants with one or more activity-modulating substances. A method altered sensitivity to one or several activity-modulating for the generation of such proteases is disclosed, com- substances and isolation of those polynucleotide se- prising the provision of a protease library encoding poly- quences that encode for the selected variants. -
Identification of New Substrates and Physiological Relevance
Université de Montréal The Multifaceted Proprotein Convertases PC7 and Furin: Identification of New Substrates and Physiological Relevance Par Stéphanie Duval Biologie Moléculaire, Faculté de médecine Thèse présentée en vue de l’obtention du grade de Philosophiae doctor (Ph.D) en Biologie moléculaire, option médecine cellulaire et moléculaire Avril 2020 © Stéphanie Duval, 2020 Résumé Les proprotéines convertases (PCs) sont responsables de la maturation de plusieurs protéines précurseurs et sont impliquées dans divers processus biologiques importants. Durant les 30 dernières années, plusieurs études sur les PCs se sont traduites en succès cliniques, toutefois les fonctions spécifiques de PC7 demeurent obscures. Afin de comprendre PC7 et d’identifier de nouveaux substrats, nous avons généré une analyse protéomique des protéines sécrétées dans les cellules HuH7. Cette analyse nous a permis d’identifier deux protéines transmembranaires de fonctions inconnues: CASC4 et GPP130/GOLIM4. Au cours de cette thèse, nous nous sommes aussi intéressé au rôle de PC7 dans les troubles comportementaux, grâce à un substrat connu, BDNF. Dans le chapitre premier, je présenterai une revue de la littérature portant entre autres sur les PCs. Dans le chapitre II, l’étude de CASC4 nous a permis de démontrer que cette protéine est clivée au site KR66↓NS par PC7 et Furin dans des compartiments cellulaires acides. Comme CASC4 a été rapporté dans des études de cancer du sein, nous avons généré des cellules MDA- MB-231 exprimant CASC4 de type sauvage et avons démontré une diminution significative de la migration et de l’invasion cellulaire. Ce phénotype est causé notamment par une augmentation du nombre de complexes d’adhésion focale et peut être contrecarré par la surexpression d’une protéine CASC4 mutante ayant un site de clivage optimale par PC7/Furin ou encore en exprimant une protéine contenant uniquement le domaine clivé N-terminal. -
Trypsin-Like Proteases and Their Role in Muco-Obstructive Lung Diseases
International Journal of Molecular Sciences Review Trypsin-Like Proteases and Their Role in Muco-Obstructive Lung Diseases Emma L. Carroll 1,†, Mariarca Bailo 2,†, James A. Reihill 1 , Anne Crilly 2 , John C. Lockhart 2, Gary J. Litherland 2, Fionnuala T. Lundy 3 , Lorcan P. McGarvey 3, Mark A. Hollywood 4 and S. Lorraine Martin 1,* 1 School of Pharmacy, Queen’s University, Belfast BT9 7BL, UK; [email protected] (E.L.C.); [email protected] (J.A.R.) 2 Institute for Biomedical and Environmental Health Research, School of Health and Life Sciences, University of the West of Scotland, Paisley PA1 2BE, UK; [email protected] (M.B.); [email protected] (A.C.); [email protected] (J.C.L.); [email protected] (G.J.L.) 3 Wellcome-Wolfson Institute for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen’s University, Belfast BT9 7BL, UK; [email protected] (F.T.L.); [email protected] (L.P.M.) 4 Smooth Muscle Research Centre, Dundalk Institute of Technology, A91 HRK2 Dundalk, Ireland; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: Trypsin-like proteases (TLPs) belong to a family of serine enzymes with primary substrate specificities for the basic residues, lysine and arginine, in the P1 position. Whilst initially perceived as soluble enzymes that are extracellularly secreted, a number of novel TLPs that are anchored in the cell membrane have since been discovered. Muco-obstructive lung diseases (MucOLDs) are Citation: Carroll, E.L.; Bailo, M.; characterised by the accumulation of hyper-concentrated mucus in the small airways, leading to Reihill, J.A.; Crilly, A.; Lockhart, J.C.; Litherland, G.J.; Lundy, F.T.; persistent inflammation, infection and dysregulated protease activity. -
Proteolytic Cleavages in the Extracellular Domain of Receptor Tyrosine Kinases by Membrane-Associated Serine Proteases
www.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 34), pp: 56490-56505 Research Paper Proteolytic cleavages in the extracellular domain of receptor tyrosine kinases by membrane-associated serine proteases Li-Mei Chen1 and Karl X. Chai1 1Burnett School of Biomedical Sciences, Division of Cancer Research, University of Central Florida College of Medicine, Orlando, FL 32816-2364, USA Correspondence to: Karl X. Chai, email: [email protected] Keywords: receptor tyrosine kinase, matriptase, prostasin, Herceptin, breast cancer Received: August 05, 2016 Accepted: March 21, 2017 Published: April 10, 2017 Copyright: Chen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT The epithelial extracellular membrane-associated serine proteases matriptase, hepsin, and prostasin are proteolytic modifying enzymes of the extracellular domain (ECD) of the epidermal growth factor receptor (EGFR). Matriptase also cleaves the ECD of the vascular endothelial growth factor receptor 2 (VEGFR2) and the angiopoietin receptor Tie2. In this study we tested the hypothesis that these serine proteases may cleave the ECD of additional receptor tyrosine kinases (RTKs). We co-expressed the proteases in an epithelial cell line with Her2, Her3, Her4, insulin receptor (INSR), insulin-like growth factor I receptor (IGF-1R), the platelet-derived growth factor receptors (PDGFRs) α and β, or nerve growth factor receptor A (TrkA). Western blot analysis was performed to detect the carboxyl-terminal fragments (CTFs) of the RTKs. Matriptase and hepsin were found to cleave the ECD of all RTKs tested, while TMPRSS6/matriptase-2 cleaves the ECD of Her4, INSR, and PDGFR α and β. -
Inhibition of Human Matriptase by Eglin C Variants
FEBS Letters 580 (2006) 2227–2232 Inhibition of human matriptase by eglin c variants Antoine De´silets, Jean-Michel Longpre´, Marie-E` ve Beaulieu, Richard Leduc* Department of Pharmacology, Faculty of Medicine and Health Sciences, Universite´ de Sherbrooke, Sherbrooke, Que., Canada J1H 5N4 Received 2 February 2006; revised 2 March 2006; accepted 9 March 2006 Available online 20 March 2006 Edited by Michael R. Bubb inhibitor eglin c [14,15]. Further studies based on the three- Abstract Based on the enzyme specificity of matriptase, a type II transmembrane serine protease (TTSP) overexpressed in epi- dimensional structure of eglin c have found that optimization thelial tumors, we screened a cDNA library expressing variants of interaction between enzyme and inhibitor could be ad- of the protease inhibitor eglin c in order to identify potent dressed by screening eglin c cDNA libraries containing ran- 0 matriptase inhibitors. The most potent of these, R1K4-eglin, domly substituted residues within projected adventitious which had the wild-type Pro45 (P1 position) and Tyr49 (P40 posi- contact sites outside the reactive site [16]. The similarity in tion) residues replaced with Arg and Lys, respectively, led to the specificity between matriptase and furin, which preferentially production of a selective, high affinity (Ki of 4 nM) and proteo- recognizes the R–X–X–R (P4 to P1 position) sequence [17], lytically stable inhibitor of matriptase. Screening for eglin c vari- led us to the hypothesis that matriptase and other members ants could yield specific, potent and stable inhibitors to of the TTSP family could be targets of genetically engineered matriptase and to other members of the TTSP family. -
TMPRSS2 and Furin Are Both Essential for Proteolytic Activation and Spread of SARS-Cov-2 in Human Airway Epithelial Cells and Pr
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042085; this version posted April 15, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 TMPRSS2 and furin are both essential for proteolytic activation and spread of SARS- 2 CoV-2 in human airway epithelial cells and provide promising drug targets 3 4 5 Dorothea Bestle1#, Miriam Ruth Heindl1#, Hannah Limburg1#, Thuy Van Lam van2, Oliver 6 Pilgram2, Hong Moulton3, David A. Stein3, Kornelia Hardes2,4, Markus Eickmann1,5, Olga 7 Dolnik1,5, Cornelius Rohde1,5, Stephan Becker1,5, Hans-Dieter Klenk1, Wolfgang Garten1, 8 Torsten Steinmetzer2, and Eva Böttcher-Friebertshäuser1* 9 10 1) Institute of Virology, Philipps-University, Marburg, Germany 11 2) Institute of Pharmaceutical Chemistry, Philipps-University, Marburg, Germany 12 3) Department of Biomedical Sciences, Carlson College of Veterinary Medicine, Oregon 13 State University, Corvallis, USA 14 4) Fraunhofer Institute for Molecular Biology and Applied Ecology, Gießen, Germany 15 5) German Center for Infection Research (DZIF), Marburg-Gießen-Langen Site, Emerging 16 Infections Unit, Philipps-University, Marburg, Germany 17 18 #These authors contributed equally to this work. 19 20 *Corresponding author: Eva Böttcher-Friebertshäuser 21 Institute of Virology, Philipps-University Marburg 22 Hans-Meerwein-Straße 2, 35043 Marburg, Germany 23 Tel: 0049-6421-2866019 24 E-mail: [email protected] 25 26 Short title: TMPRSS2 and furin activate SARS-CoV-2 spike protein 27 28 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042085; this version posted April 15, 2020. -
The SARS-Coronavirus Infection Cycle: a Survey of Viral Membrane Proteins, Their Functional Interactions and Pathogenesis
International Journal of Molecular Sciences Review The SARS-Coronavirus Infection Cycle: A Survey of Viral Membrane Proteins, Their Functional Interactions and Pathogenesis Nicholas A. Wong * and Milton H. Saier, Jr. * Department of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093-0116, USA * Correspondence: [email protected] (N.A.W.); [email protected] (M.H.S.J.); Tel.: +1-650-763-6784 (N.A.W.); +1-858-534-4084 (M.H.S.J.) Abstract: Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) is a novel epidemic strain of Betacoronavirus that is responsible for the current viral pandemic, coronavirus disease 2019 (COVID- 19), a global health crisis. Other epidemic Betacoronaviruses include the 2003 SARS-CoV-1 and the 2009 Middle East Respiratory Syndrome Coronavirus (MERS-CoV), the genomes of which, particularly that of SARS-CoV-1, are similar to that of the 2019 SARS-CoV-2. In this extensive review, we document the most recent information on Coronavirus proteins, with emphasis on the membrane proteins in the Coronaviridae family. We include information on their structures, functions, and participation in pathogenesis. While the shared proteins among the different coronaviruses may vary in structure and function, they all seem to be multifunctional, a common theme interconnecting these viruses. Many transmembrane proteins encoded within the SARS-CoV-2 genome play important roles in the infection cycle while others have functions yet to be understood. We compare the various structural and nonstructural proteins within the Coronaviridae family to elucidate potential overlaps Citation: Wong, N.A.; Saier, M.H., Jr. -
Hepsin, a Cell Surface Serine Protease Identified in Hepatoma Cells, Is Overexpressed in Ovarian Cancer
CANCER RESEARCH 57. 2554-2887. July 5. 9971 Advances in Brief Hepsin, a Cell Surface Serine Protease Identified in Hepatoma Cells, Is Overexpressed in Ovarian Cancer HirotoshiTanimoto,Yan Yan,John Clarke,SoheliaKorourian,KazushiShigemasa,Tim H. Parmley, Groesbeck P. Parham, and Timothy J. O'Brien' Departments of Obstetrics and Gynecology [H. T.. Y. Y.. J. C.. T. H. P.. G. P. P.. T. J. 0.], Pathology (S. K.]. and Biochemistry and Molecular Biology IT. J. 0.1, Unisersily of Arkansas for Medical Sciences, Little Rock. Arkansas 72205-7/99. and Department of Obstetrics and Gynecology. Hiroshima University School of Medicine, Hiroshima, Japan 737 fK. 5.1 Abstract collagenase (3, 10—13).A significant correlation with tumor progres sion and the immunoreactivity for Mr 72,000 type IV collagenase is Extracellular proteases mediate the digestion of neighboring extracel observed in colorectal cancer (3), and the decrease in the Mr 72,000 lular matrix componentsin initial tumor growth, allow sheddingor des type IV collagenase by pharmacological treatment causes loss of the quamation of tumor cells into the surrounding environment, provide the basis for invasion of basement membranes in target metastatic organs, invasive capacity in vitro (10). Here we investigated the expression of and are required for release and activation of many growth and anglo serine proteases in ovarian tumors by selecting conserved domains in genie factors. We identified overexpression of the serine protease hepsin the immediate vicinity of the catalytic triad of histine-aspartic acid gene in ovarian carcinomas and investigated the expression of this gene in and serine. These sentinel amino acids are surrounded by relatively 44 ovarian tumors (12 low malignant potential tumors and 32 carcinomas) well-conserved domains separated by approximately 50—!00 amino and 10 normal ovaries. -
Protease Activated Receptors and Arthritis
International Journal of Molecular Sciences Review Protease Activated Receptors and Arthritis Flora Lucena and Jason J. McDougall * Departments of Pharmacology and Anesthesia, Pain Management & Perioperative Medicine, Dalhousie University, 5850 College Street, Halifax, NS B3H 4R2, Canada; fl[email protected] * Correspondence: [email protected] Abstract: The catabolic and destructive activity of serine proteases in arthritic joints is well known; however, these enzymes can also signal pain and inflammation in joints. For example, thrombin, trypsin, tryptase, and neutrophil elastase cleave the extracellular N-terminus of a family of G protein- coupled receptors and the remaining tethered ligand sequence then binds to the same receptor to initiate a series of molecular signalling processes. These protease activated receptors (PARs) pervade multiple tissues and cells throughout joints where they have the potential to regulate joint homeostasis. Overall, joint PARs contribute to pain, inflammation, and structural integrity by altering vascular reactivity, nociceptor sensitivity, and tissue remodelling. This review highlights the therapeutic potential of targeting PARs to alleviate the pain and destructive nature of elevated proteases in various arthritic conditions. Keywords: arthritis; inflammation; joint damage; proteases; pain 1. Introduction Musculoskeletal diseases comprise the most prevalent chronic pain conditions with Citation: Lucena, F.; McDougall, J.J. arthritides accounting for the majority of these disorders [1]. Although there are over Protease Activated Receptors and 100 different types of arthritis, the most commonly studied are inflammatory rheumatoid Arthritis. Int. J. Mol. Sci. 2021, 22, arthritis (RA) and degenerative osteoarthritis (OA). In RA, an individual’s immune system 9352. https://doi.org/10.3390/ is dysregulated and inflammatory cells begin to destroy the host joint tissues by releasing ijms22179352 chemical mediators into the joint. -
Biochemical Journal INTRODUCTION Terminal and Kringle Domains of HGF [4]
View metadata, citation and similar papers at core.ac.uk brought to you by CORE www.biochemj.org provided by University of East Anglia digital repository Biochem. J. (2010) 426, 219–228 (Printed in Great Britain) doi:10.1042/BJ20091448 219 Pericellular activation of hepatocyte growth factor by the transmembrane serine proteases matriptase and hepsin, but not by the membrane-associated protease uPA Kate A. OWEN*, Deyi QIU*, Juliano ALVES†, Andrew M. SCHUMACHER†, Lynette M. KILPATRICK*, Jun LI†, Jennifer L. HARRIS† and Vincent ELLIS*1 *Biomedical Research Centre, School of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, U.K., and †Genomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Drive, San Diego, CA 92121, U.S.A. HGF (hepatocyte growth factor) is a pleiotropic cytokine a high specificity for this reaction. Both TTSPs were also found to homologous to the serine protease zymogen plasminogen that be efficient activators at the cell surface. Activation of pro-HGF requires canonical proteolytic cleavage to gain functional activity. by PC3 prostate carcinoma cells was abolished by both protease The activating proteases are key components of its regulation, inhibition and matriptase-targeting siRNA (small interfering but controversy surrounds their identity. Using quantitative RNA), and scattering of MDCK (Madin–Darby canine kidney) analysis we found no evidence for activation by uPA (urokinase cells in the presence of pro-HGF was abolished by inhibition of plasminogen activator), despite reports that this is a principal matriptase. Hepsin-transfected HEK (human embryonic kidney)- activator of pro-HGF. This was unaffected by a wide range of 293 cells also activated pro-HGF. -
A Genomic Analysis of Rat Proteases and Protease Inhibitors
A genomic analysis of rat proteases and protease inhibitors Xose S. Puente and Carlos López-Otín Departamento de Bioquímica y Biología Molecular, Facultad de Medicina, Instituto Universitario de Oncología, Universidad de Oviedo, 33006-Oviedo, Spain Send correspondence to: Carlos López-Otín Departamento de Bioquímica y Biología Molecular Facultad de Medicina, Universidad de Oviedo 33006 Oviedo-SPAIN Tel. 34-985-104201; Fax: 34-985-103564 E-mail: [email protected] Proteases perform fundamental roles in multiple biological processes and are associated with a growing number of pathological conditions that involve abnormal or deficient functions of these enzymes. The availability of the rat genome sequence has opened the possibility to perform a global analysis of the complete protease repertoire or degradome of this model organism. The rat degradome consists of at least 626 proteases and homologs, which are distributed into five catalytic classes: 24 aspartic, 160 cysteine, 192 metallo, 221 serine, and 29 threonine proteases. Overall, this distribution is similar to that of the mouse degradome, but significatively more complex than that corresponding to the human degradome composed of 561 proteases and homologs. This increased complexity of the rat protease complement mainly derives from the expansion of several gene families including placental cathepsins, testases, kallikreins and hematopoietic serine proteases, involved in reproductive or immunological functions. These protease families have also evolved differently in the rat and mouse genomes and may contribute to explain some functional differences between these two closely related species. Likewise, genomic analysis of rat protease inhibitors has shown some differences with the mouse protease inhibitor complement and the marked expansion of families of cysteine and serine protease inhibitors in rat and mouse with respect to human.