Grass Classification and Morphology
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Poaceae: Bambusoideae) Christopher Dean Tyrrell Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2008 Systematics of the neotropical woody bamboo genus Rhipidocladum (Poaceae: Bambusoideae) Christopher Dean Tyrrell Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Botany Commons Recommended Citation Tyrrell, Christopher Dean, "Systematics of the neotropical woody bamboo genus Rhipidocladum (Poaceae: Bambusoideae)" (2008). Retrospective Theses and Dissertations. 15419. https://lib.dr.iastate.edu/rtd/15419 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Systematics of the neotropical woody bamboo genus Rhipidocladum (Poaceae: Bambusoideae) by Christopher Dean Tyrrell A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Major: Ecology and Evolutionary Biology Program of Study Committee: Lynn G. Clark, Major Professor Dennis V. Lavrov Robert S. Wallace Iowa State University Ames, Iowa 2008 Copyright © Christopher Dean Tyrrell, 2008. All rights reserved. 1457571 1457571 2008 ii In memory of Thomas D. Tyrrell Festum Asinorum iii TABLE OF CONTENTS ABSTRACT iv CHAPTER 1. GENERAL INTRODUCTION 1 Background and Significance 1 Research Objectives 5 Thesis Organization 6 Literature Cited 6 CHAPTER 2. PHYLOGENY OF THE BAMBOO SUBTRIBE 9 ARTHROSTYLIDIINAE WITH EMPHASIS ON RHIPIDOCLADUM Abstract 9 Introduction 10 Methods and Materials 13 Results 19 Discussion 25 Taxonomic Treatment 26 Literature Cited 31 CHAPTER 3. -
A Phylogeny of the Hubbardochloinae Including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae)
Peterson, P.M., K. Romaschenko, and Y. Herrera Arrieta. 2020. A phylogeny of the Hubbardochloinae including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae). Phytoneuron 2020-81: 1–13. Published 18 November 2020. ISSN 2153 733 A PHYLOGENY OF THE HUBBARDOCHLOINAE INCLUDING TETRACHAETE (CYNODONTEAE: CHLORIDOIDEAE: POACEAE) PAUL M. PETERSON AND KONSTANTIN ROMASCHENKO Department of Botany National Museum of Natural History Smithsonian Institution Washington, D.C. 20013-7012 [email protected]; [email protected] YOLANDA HERRERA ARRIETA Instituto Politécnico Nacional CIIDIR Unidad Durango-COFAA Durango, C.P. 34220, México [email protected] ABSTRACT The phylogeny of subtribe Hubbardochloinae is revisited, here with the inclusion of the monotypic genus Tetrachaete, based on a molecular DNA analysis using ndhA intron, rpl32-trnL, rps16 intron, rps16- trnK, and ITS markers. Tetrachaete elionuroides is aligned within the Hubbardochloinae and is sister to Dignathia. The biogeography of the Hubbardochloinae is discussed, its origin likely in Africa or temperate Asia. In a previous molecular DNA phylogeny (Peterson et al. 2016), the subtribe Hubbardochloinae Auquier [Bewsia Gooss., Dignathia Stapf, Gymnopogon P. Beauv., Hubbardochloa Auquier, Leptocarydion Hochst. ex Stapf, Leptothrium Kunth, and Lophacme Stapf] was found in a clade with moderate support (BS = 75, PP = 1.00) sister to the Farragininae P.M. Peterson et al. In the present study, Tetrachaete elionuroides Chiov. is included in a phylogenetic analysis (using ndhA intron, rpl32- trnL, rps16 intron, rps16-trnK, and ITS DNA markers) in order to test its relationships within the Cynodonteae with heavy sampling of species in the supersubtribe Gouiniodinae P.M. Peterson & Romasch. Chiovenda (1903) described Tetrachaete Chiov. with a with single species, T. -
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae) Yun-Jie Zhang1,2,3., Peng-Fei Ma1,2,3., De-Zhu Li1,2* 1 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 2 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 3 Graduate University of Chinese Academy of Sciences, Beijing, People’s Republic of China Abstract Background: Bambusoideae is the only subfamily that contains woody members in the grass family, Poaceae. In phylogenetic analyses, Bambusoideae, Pooideae and Ehrhartoideae formed the BEP clade, yet the internal relationships of this clade are controversial. The distinctive life history (infrequent flowering and predominance of asexual reproduction) of woody bamboos makes them an interesting but taxonomically difficult group. Phylogenetic analyses based on large DNA fragments could only provide a moderate resolution of woody bamboo relationships, although a robust phylogenetic tree is needed to elucidate their evolutionary history. Phylogenomics is an alternative choice for resolving difficult phylogenies. Methodology/Principal Findings: Here we present the complete nucleotide sequences of six woody bamboo chloroplast (cp) genomes using Illumina sequencing. These genomes are similar to those of other grasses and rather conservative in evolution. We constructed a phylogeny of Poaceae from 24 complete cp genomes including 21 grass species. Within the BEP clade, we found strong support for a sister relationship between Bambusoideae and Pooideae. In a substantial improvement over prior studies, all six nodes within Bambusoideae were supported with $0.95 posterior probability from Bayesian inference and 5/6 nodes resolved with 100% bootstrap support in maximum parsimony and maximum likelihood analyses. -
Improving Our Understanding of Environmental Controls on the Distribution of C3 and C4 Grasses STEPHANIE PAU*, ERIKA J
Global Change Biology (2013) 19, 184–196, doi: 10.1111/gcb.12037 Improving our understanding of environmental controls on the distribution of C3 and C4 grasses STEPHANIE PAU*, ERIKA J. EDWARDS† andCHRISTOPHER J. STILL‡§ *National Center for Ecological Analysis and Synthesis (NCEAS), 735 State Street, Suite 300, Santa Barbara, CA 93101, USA, †Department of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912, USA, ‡Department of Geography, University of California, Santa Barbara, CA 93106-4060, USA, §Forest Ecosystems and Society, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331-5752, USA Abstract A number of studies have demonstrated the ecological sorting of C3 and C4 grasses along temperature and moisture gradients. However, previous studies of C3 and C4 grass biogeography have often inadvertently compared species in different and relatively unrelated lineages, which are associated with different environmental settings and distinct adaptive traits. Such confounded comparisons of C3 and C4 grasses may bias our understanding of ecological sorting imposed strictly by photosynthetic pathway. Here, we used MaxEnt species distribution modeling in combination with satellite data to understand the functional diversity of C3 and C4 grasses by comparing both large clades and closely related sister taxa. Similar to previous work, we found that C4 grasses showed a preference for regions with higher temperatures and lower precipitation compared with grasses using the C3 pathway. However, air temperature differences were smaller (2 °C vs. 4 °C) and precipitation and % tree cover differences were larger (1783 mm vs. 755 mm, 21.3% vs. 7.7%, respectively) when comparing C3 and C4 grasses within the same clade vs. -
24. Tribe PANICEAE 黍族 Shu Zu Chen Shouliang (陈守良); Sylvia M
POACEAE 499 hairs, midvein scabrous, apex obtuse, clearly demarcated from mm wide, glabrous, margins spiny-scabrous or loosely ciliate awn; awn 1–1.5 cm; lemma 0.5–1 mm. Anthers ca. 0.3 mm. near base; ligule ca. 0.5 mm. Inflorescence up to 20 cm; spike- Caryopsis terete, narrowly ellipsoid, 1–1.8 mm. lets usually densely arranged, ascending or horizontally spread- ing; rachis scabrous. Spikelets 1.5–2.5 mm (excluding awns); Stream banks, roadsides, other weedy places, on sandy soil. Guangdong, Hainan, Shandong, Taiwan, Yunnan [Bhutan, Cambodia, basal callus 0.1–0.2 mm, obtuse; glumes narrowly lanceolate, India, Indonesia, Laos, Malaysia, Myanmar, Nepal, Philippines, Sri back scaberulous-hirtellous in rather indistinct close rows (most Lanka, Thailand, Vietnam; Africa (probably introduced), Australia obvious toward lemma base), midvein pectinate-ciliolate, apex (Queensland)]. abruptly acute, clearly demarcated from awn; awn 0.5–1.5 cm. Anthers ca. 0.3 mm. Caryopsis terete, narrowly ellipsoid, ca. 3. Perotis hordeiformis Nees in Hooker & Arnott, Bot. Beech- 1.5 mm. Fl. and fr. summer and autumn. 2n = 40. ey Voy. 248. 1838. Sandy places, along seashores. Guangdong, Hebei, Jiangsu, 麦穗茅根 mai sui mao gen Yunnan [India, Indonesia, Malaysia, Nepal, Myanmar, Pakistan, Sri Lanka, Thailand]. Perotis chinensis Gandoger. This species is very close to Perotis indica and is sometimes in- Annual or short-lived perennial. Culms loosely tufted, cluded within it. No single character by itself is reliable for separating erect or decumbent at base, 25–40 cm tall. Leaf sheaths gla- the two, but the combination of characters given in the key will usually brous; leaf blades lanceolate to narrowly ovate, 2–4 cm, 4–7 suffice. -
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(S): Grass Phylogeny Working Group, Nigel P
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(s): Grass Phylogeny Working Group, Nigel P. Barker, Lynn G. Clark, Jerrold I. Davis, Melvin R. Duvall, Gerald F. Guala, Catherine Hsiao, Elizabeth A. Kellogg, H. Peter Linder Source: Annals of the Missouri Botanical Garden, Vol. 88, No. 3 (Summer, 2001), pp. 373-457 Published by: Missouri Botanical Garden Press Stable URL: http://www.jstor.org/stable/3298585 Accessed: 06/10/2008 11:05 Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/page/info/about/policies/terms.jsp. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/action/showPublisher?publisherCode=mobot. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. JSTOR is a not-for-profit organization founded in 1995 to build trusted digital archives for scholarship. We work with the scholarly community to preserve their work and the materials they rely upon, and to build a common research platform that promotes the discovery and use of these resources. For more information about JSTOR, please contact [email protected]. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
Morphological, Anatomical, and Taxonomic Studies in Anomochloa and Streptochaeta (Poaceae: Bambusoideae)
SMITHSONIAN CONTRIBUTIONS TO BOTANY NUMBER 68 Morphological, Anatomical, and Taxonomic Studies in Anomochloa and Streptochaeta (Poaceae: Bambusoideae) Emmet J. Judziewicz and Thomas R. Soderstrom SMITHSONIAN INSTITUTION PRESS Washington, D.C. 1989 ABSTRACT Judziewicz, Emmet J., and Thomas R. Soderstrom. Morphological, Anatomical, and Taxonomic Studies in Anomochloa and Streptochaeta (Poaceae: Bambusoideae). Smithsonian Contributions to Botany, number 68,52 pages, 24 figures, 1 table, 1989.-Although resembling the core group of the bambusoid grasses in many features of leaf anatomy, the Neotropical rainforest grass genera Anomochloa and Streptochaeta share characters that are unusual in the subfamily: lack of ligules, exceptionally long microhairs with an unusual morphology, a distinctive leaf blade midrib structure, and 5-nerved coleoptiles. Both genera also possess inflorescences that are difficult to interpret in conventional agrostological terms. Anomochloa is monotypic, and A. marantoidea, described in 1851 by Adolphe Brongniart from cultivated material of uncertain provenance, was rediscovered in 1976 in the wet forests of coastal Bahia, Brazil. The inflorescence terminates in a spikelet and bears along its rachis several scorpioid cyme-like partial inflorescences. Each axis of a partial inflorescence is subtended by a keeled bract and bears as its first appendages two tiny, unvascularized bracteoles attached at slightly different levels. The spikelets are composed of an axis that bears two bracts and terminates in a flower. The lower, chlorophyllous, deciduous spikelet bract is separated from the coriaceous, persistent, corniculate upper bract by a cylindrical, indurate internode. The flower consists of a low membrane surmounted by a dense ring of brown cilia (perigonate annulus) surrounding the andrecium of four stamens, and an ovary bearing a single hispid stigma. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
Chapter 5 Phylogeny of Poaceae Based on Matk Gene Sequences
Chapter 5 Phylogeny of Poaceae Based on matK Gene Sequences 5.1 Introduction Phylogenetic reconstruction in the Poaceae began early in this century with proposed evolutionary hypotheses based on assessment of existing knowledge of grasses (e.g., Bew, 1929; Hubbard 1948; Prat, 1960; Stebbins, 1956, 1982; Clayton, 1981; Tsvelev, 1983). Imperical approaches to phylogenetic reconstruction of the Poaceae followed those initial hypotheses, starting with cladistic analyses of morphological and anatomical characters (Kellogg and Campbell, 1987; Baum, 1987; Kellogg and Watson, 1993). More recently, molecular information has provided the basis for phylogenetic hypotheses in grasses at the subfamily and tribe levels (Table 5.1). These molecular studies were based on information from chloroplast DNA (cpDNA) restriction sites and DNA sequencing of the rbcL, ndhF, rps4, 18S and 26S ribosomal DNA (rDNA), phytochrome genes, and the ITS region (Hamby and Zimmer, 1988; Doebley et al., 1990; Davis and Soreng, 1993; Cummings, King, and Kellogg, 1994; Hsiao et al., 1994; Nadot, Bajon, and Lejeune, 1994; Barker, Linder, and Harley, 1995; Clark, Zhang, and Wendel, 1995; Duvall and Morton, 1996; Liang and Hilu, 1996; Mathews and Sharrock, 1996). Although these studies have refined our concept of grass evolution at the subfamily level and, to a certain degree, at the tribal level, major disagreements and questions remain to be addressed. Outstanding discrepancies at the subfamily level include: 1) Are the pooids, bambusoids senso lato, or herbaceous bamboos the -
Urochloa Subquadripara (Poaceae: Paniceae) New to Texas and a Key to Urochloa of Texas
Hatch, S.L. 2010. Urochloa subquadripara (Poaceae: Paniceae) new to Texas and a key to Urochloa of Texas. Phytoneuron 2010-8: 1-4. (8 April) UROCHLOA SUBQUADRIPARA (POACEAE: PANICEAE) NEW TO TEXAS AND A KEY TO UROCHLOA OF TEXAS Stephan L. Hatch S.M. Tracy Herbarium (TAES) Department of Ecosystem Science and Management Texas A&M University College Station, TX 77843-2138, U.S.A. [email protected] ABSTRACT Urochloa subquadripara is reported as introduced into Texas. A key to separate the 13 species of Urochloa in Texas is presented along with an image of the newly reported species. KEY WORDS : Poaceae, Urochloa , Texas, introduced, invasive plant Urochloa P. Beauv. is primarily a grass genus of Old World origin. Thirteen of the estimated 100 species (Wipff & Thompson 2003) worldwide occur in Texas. This genus was separated from closely related or similar Paniceae by Wipff et al. in 1993. Urochloa (Wipff & Thompson 2003) is described as having terminal and axilliary panicle inflorescences with 2 to several spicate primary unilateral branches. Spikelets are solitary, paired, or in triplets and occur in 1–2 (4) rows per primary branch. With 2 florets per spikelet, the upper floret is fertile, indurate and rugose to verrucose, the lower floret sterile or staminate. A key to three Urochloa species was published by Wipff et al. (1993). Eight of the Texas taxa are introduced (five invasive) and five are native to North America. The introduced taxa are native to tropical or subtropical regions of the world and their points of introduction appear to be from the coast or south Texas and following a period of adaptation move inland and/or to the north. -
Ornamental Grasses for the Midsouth Landscape
Ornamental Grasses for the Midsouth Landscape Ornamental grasses with their variety of form, may seem similar, grasses vary greatly, ranging from cool color, texture, and size add diversity and dimension to season to warm season grasses, from woody to herbaceous, a landscape. Not many other groups of plants can boast and from annuals to long-lived perennials. attractiveness during practically all seasons. The only time This variation has resulted in five recognized they could be considered not to contribute to the beauty of subfamilies within Poaceae. They are Arundinoideae, the landscape is the few weeks in the early spring between a unique mix of woody and herbaceous grass species; cutting back the old growth of the warm-season grasses Bambusoideae, the bamboos; Chloridoideae, warm- until the sprouting of new growth. From their emergence season herbaceous grasses; Panicoideae, also warm-season in the spring through winter, warm-season ornamental herbaceous grasses; and Pooideae, a cool-season subfamily. grasses add drama, grace, and motion to the landscape Their habitats also vary. Grasses are found across the unlike any other plants. globe, including in Antarctica. They have a strong presence One of the unique and desirable contributions in prairies, like those in the Great Plains, and savannas, like ornamental grasses make to the landscape is their sound. those in southern Africa. It is important to recognize these Anyone who has ever been in a pine forest on a windy day natural characteristics when using grasses for ornament, is aware of the ethereal music of wind against pine foliage. since they determine adaptability and management within The effect varies with the strength of the wind and the a landscape or region, as well as invasive potential.