Exposure to a Social Stressor Alters the Structure of the Intestinal Microbiota: Implications for Stressor-Induced Immunomodulation Q ⇑ Michael T
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Comparison of Enzymatic Activities and Proteomic Profiles Of
Sechovcová et al. Proteome Science (2019) 17:2 https://doi.org/10.1186/s12953-019-0150-3 RESEARCH Open Access Comparison of enzymatic activities and proteomic profiles of Butyrivibrio fibrisolvens grown on different carbon sources Hana Sechovcová1,5* , Lucie Kulhavá2,4, Kateřina Fliegerová1, Mária Trundová3, Daniel Morais6, Jakub Mrázek1 and Jan Kopečný1 Abstract Background: The rumen microbiota is one of the most complex consortia of anaerobes, involving archaea, bacteria, protozoa, fungi and phages. They are very effective at utilizing plant polysaccharides, especially cellulose and hemicelluloses. The most important hemicellulose decomposers are clustered with the genus Butyrivibrio.As the related species differ in their range of hydrolytic activities and substrate preferences, Butyrivibrio fibrisolvens was selected as one of the most effective isolates and thus suitable for proteomic studies on substrate comparisons in the extracellular fraction. The B. fibrisolvens genome is the biggest in the butyrivibria cluster and is focused on “environmental information processing” and “carbohydrate metabolism”. Methods: The study of the effect of carbon source on B. fibrisolvens 3071 was based on cultures grown on four substrates: xylose, glucose, xylan, xylan with 25% glucose. The enzymatic activities were studied by spectrophotometric and zymogram methods. Proteomic study was based on genomics, 2D electrophoresis and nLC/MS (Bruker Daltonics) analysis. Results: Extracellular β-endoxylanase as well as xylan β-xylosidase activities were induced with xylan. The presence of the xylan polymer induced hemicellulolytic enzymes and increased the protein fraction in the interval from 40 to 80 kDa. 2D electrophoresis with nLC/MS analysis of extracellular B. fibrisolvens 3071 proteins found 14 diverse proteins with significantly different expression on the tested substrates. -
Fatty Acid Diets: Regulation of Gut Microbiota Composition and Obesity and Its Related Metabolic Dysbiosis
International Journal of Molecular Sciences Review Fatty Acid Diets: Regulation of Gut Microbiota Composition and Obesity and Its Related Metabolic Dysbiosis David Johane Machate 1, Priscila Silva Figueiredo 2 , Gabriela Marcelino 2 , Rita de Cássia Avellaneda Guimarães 2,*, Priscila Aiko Hiane 2 , Danielle Bogo 2, Verônica Assalin Zorgetto Pinheiro 2, Lincoln Carlos Silva de Oliveira 3 and Arnildo Pott 1 1 Graduate Program in Biotechnology and Biodiversity in the Central-West Region of Brazil, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; [email protected] (D.J.M.); [email protected] (A.P.) 2 Graduate Program in Health and Development in the Central-West Region of Brazil, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; pri.fi[email protected] (P.S.F.); [email protected] (G.M.); [email protected] (P.A.H.); [email protected] (D.B.); [email protected] (V.A.Z.P.) 3 Chemistry Institute, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-67-3345-7416 Received: 9 March 2020; Accepted: 27 March 2020; Published: 8 June 2020 Abstract: Long-term high-fat dietary intake plays a crucial role in the composition of gut microbiota in animal models and human subjects, which affect directly short-chain fatty acid (SCFA) production and host health. This review aims to highlight the interplay of fatty acid (FA) intake and gut microbiota composition and its interaction with hosts in health promotion and obesity prevention and its related metabolic dysbiosis. -
Evaluation of the Bacterial Diversity in the Human Tongue Coating Based on Genus-Specific Primers for 16S Rrna Sequencing
Hindawi BioMed Research International Volume 2017, Article ID 8184160, 12 pages https://doi.org/10.1155/2017/8184160 Research Article Evaluation of the Bacterial Diversity in the Human Tongue Coating Based on Genus-Specific Primers for 16S rRNA Sequencing Beili Sun,1 Dongrui Zhou,2 Jing Tu,1 and Zuhong Lu1,2 1 State Key Laboratory of Bioelectronics, Southeast University, Nanjing 210096, China 2Key Laboratory of Child Development and Learning Science, Ministry of Education of China, Southeast University, Nanjing 210096, China Correspondence should be addressed to Zuhong Lu; [email protected] Received 25 February 2017; Revised 20 June 2017; Accepted 20 July 2017; Published 20 August 2017 Academic Editor: Koichiro Wada Copyright © 2017 Beili Sun et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The characteristics of tongue coating are very important symbols for disease diagnosis in traditional Chinese medicine (TCM) theory.Asahabitatoforalmicrobiota,bacteriaonthetonguedorsumhavebeenprovedtobethecauseofmanyoraldiseases.The high-throughput next-generation sequencing (NGS) platforms have been widely applied in the analysis of bacterial 16S rRNA gene. We developed a methodology based on genus-specific multiprimer amplification and ligation-based sequencing for microbiota analysis. In order to validate the efficiency of the approach, we thoroughly analyzed six tongue coating samples from lung cancer patients with different TCM types, and more than 600 genera of bacteria were detected by this platform. The results showed that ligation-based parallel sequencing combined with enzyme digestion and multiamplification could expand the effective length of sequencing reads and could be applied in the microbiota analysis. -
Characterization of Antibiotic Resistance Genes in the Species of the Rumen Microbiota
ARTICLE https://doi.org/10.1038/s41467-019-13118-0 OPEN Characterization of antibiotic resistance genes in the species of the rumen microbiota Yasmin Neves Vieira Sabino1, Mateus Ferreira Santana1, Linda Boniface Oyama2, Fernanda Godoy Santos2, Ana Júlia Silva Moreira1, Sharon Ann Huws2* & Hilário Cuquetto Mantovani 1* Infections caused by multidrug resistant bacteria represent a therapeutic challenge both in clinical settings and in livestock production, but the prevalence of antibiotic resistance genes 1234567890():,; among the species of bacteria that colonize the gastrointestinal tract of ruminants is not well characterized. Here, we investigate the resistome of 435 ruminal microbial genomes in silico and confirm representative phenotypes in vitro. We find a high abundance of genes encoding tetracycline resistance and evidence that the tet(W) gene is under positive selective pres- sure. Our findings reveal that tet(W) is located in a novel integrative and conjugative element in several ruminal bacterial genomes. Analyses of rumen microbial metatranscriptomes confirm the expression of the most abundant antibiotic resistance genes. Our data provide insight into antibiotic resistange gene profiles of the main species of ruminal bacteria and reveal the potential role of mobile genetic elements in shaping the resistome of the rumen microbiome, with implications for human and animal health. 1 Departamento de Microbiologia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil. 2 Institute for Global Food Security, School of Biological -
MICRO-ORGANISMS and RUMINANT DIGESTION: STATE of KNOWLEDGE, TRENDS and FUTURE PROSPECTS Chris Mcsweeney1 and Rod Mackie2
BACKGROUND STUDY PAPER NO. 61 September 2012 E Organización Food and Organisation des Продовольственная и cельскохозяйственная de las Agriculture Nations Unies Naciones Unidas Organization pour организация para la of the l'alimentation Объединенных Alimentación y la United Nations et l'agriculture Наций Agricultura COMMISSION ON GENETIC RESOURCES FOR FOOD AND AGRICULTURE MICRO-ORGANISMS AND RUMINANT DIGESTION: STATE OF KNOWLEDGE, TRENDS AND FUTURE PROSPECTS Chris McSweeney1 and Rod Mackie2 The content of this document is entirely the responsibility of the authors, and does not necessarily represent the views of the FAO or its Members. 1 Commonwealth Scientific and Industrial Research Organisation, Livestock Industries, 306 Carmody Road, St Lucia Qld 4067, Australia. 2 University of Illinois, Urbana, Illinois, United States of America. This document is printed in limited numbers to minimize the environmental impact of FAO's processes and contribute to climate neutrality. Delegates and observers are kindly requested to bring their copies to meetings and to avoid asking for additional copies. Most FAO meeting documents are available on the Internet at www.fao.org ME992 BACKGROUND STUDY PAPER NO.61 2 Table of Contents Pages I EXECUTIVE SUMMARY .............................................................................................. 5 II INTRODUCTION ............................................................................................................ 7 Scope of the Study ........................................................................................................... -
Using a Different Growth Medium
doi:10.2478/v10014-011-0009-5 COBISS: 1.01 Agris category code: L51 USING A DIFFERENT GROWTH MEDIUM GREATLY IMPROVES DISTINCTION OF Butyrivibrio fibrisolvens AND Pseudobutyrivibrio xylanivorans STRAINS BY THE CELLULAR FATTY ACIDS AND ALDEHYDES PROFILES Maša ZOREC 1, Maša VODOVNIK 2, Romana MARINŠEK LOGAR 2 Received October 22, 2010; accepted December 21, 2010. Delo je prispelo 22. oktobra 2010, sprejeto 21. decembra 2010. Using a different growth medium greatly improves distinction Uporaba različnih gojišč bistveno olajša ločevanje sevov Bu- of Butyrivibrio fibrisolvens and Pseudobutyrivibrio xylanivo- tyrivibrio fibrisolvens in Pseudobutyrivibrio xylanivorans na rans strains by the cellular fatty acids and aldehydes profiles osnovi profilov maščobnih kislin in aldehidov A total of 11 ruminal strains currently assigned to Butyr- Skupno smo gojili 11 vampnih sevov iz vrst Butyrivibrio ivibrio fibrisolvens and Pseudobutyrivibrio xylanivorans were fibrisolvens in Pseudobutyrivibrio xylanivorans v dveh različnih cultivated in two different media, rumen fluid containing M2 gojiščih: v M2 z vampnim sokom in v M330 z mešanico krat- and short-chain fatty acid (SCFA) containing M330, and their koverižnih maščobnih kislin (SCFA). S plinsko kromatografijo cellular fatty acid methyl esters (FAME) and dimethylacetals smo analizirali njihove metilne estre celičnih maščobnih kislin (DMA) were analyzed using gas chromatography. A compari- (FAME) in dimetilacetale (DMA). Primerjava sestave FAME/ son of the FAME/DMA compositions revealed that the dif- DMA je razkrila, da razlika v vsebnosti SCFA v gojišču pov- ference in SCFA contents in the growth medium induced a zroči izrazit kvantitativen učinek na deleže celičnih razvejanih pronounced quantitative effect on the cellular branched-chain maščobnih kislin in aldehidov le pri sevih vrste P. -
Microbial Communities Mediating Algal Detritus Turnover Under Anaerobic Conditions
Microbial communities mediating algal detritus turnover under anaerobic conditions Jessica M. Morrison1,*, Chelsea L. Murphy1,*, Kristina Baker1, Richard M. Zamor2, Steve J. Nikolai2, Shawn Wilder3, Mostafa S. Elshahed1 and Noha H. Youssef1 1 Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA 2 Grand River Dam Authority, Vinita, OK, USA 3 Department of Integrative Biology, Oklahoma State University, Stillwater, OK, USA * These authors contributed equally to this work. ABSTRACT Background. Algae encompass a wide array of photosynthetic organisms that are ubiquitously distributed in aquatic and terrestrial habitats. Algal species often bloom in aquatic ecosystems, providing a significant autochthonous carbon input to the deeper anoxic layers in stratified water bodies. In addition, various algal species have been touted as promising candidates for anaerobic biogas production from biomass. Surprisingly, in spite of its ecological and economic relevance, the microbial community involved in algal detritus turnover under anaerobic conditions remains largely unexplored. Results. Here, we characterized the microbial communities mediating the degradation of Chlorella vulgaris (Chlorophyta), Chara sp. strain IWP1 (Charophyceae), and kelp Ascophyllum nodosum (phylum Phaeophyceae), using sediments from an anaerobic spring (Zodlteone spring, OK; ZDT), sludge from a secondary digester in a local wastewater treatment plant (Stillwater, OK; WWT), and deeper anoxic layers from a seasonally stratified lake -
Naseribafrouei.Pdf (1.673Mb)
Correlation Between Gut Microbiota and Depression Ali Naseribafrouei Master degree in Applied Biotechnology HEDMARK UNIVERSITY COLLEGE 2013 Ali Naseribafrouei Page 1 Table of Contents Acknowledgment………………………………………………………………. 5 Abstracts……………………………………………………………………….. 6 Abbreviation………………………………………………………………………………..7 Introduction……………………………………………………………………..8 Definition…………...……………………………………………………………………………………………8 Signs and Symptoms…………………...………………………………….……………………………………..9 Etiology………...……………………………………………………………………………………………….10 Diagnosis...……………………………………………………………………………………………………...12 Management………...…………………………………………………………………………………………..13 Hypothalamic Pituitary Adrenal (HPA) System………..………………………………………………………14 Alterations of HPA system and Hypercortisolemia in depression……………….……………….………...…..14 Analysis of HPA system function………….…………………………………………………………………...15 Human Gut Microbiome…….…………………...……………………………………………………………..16 Human Gut Microbiome‘s contribution to health and disease……………………………………...………….21 Culture-independent analyzing methods……………………………….………………………………………22 16S rRNA gene as microbial molecular marker………………………...……………………………………..23 DNA Sequencing……………………………………….………………………………………………………24 BigDye Terminator………………...…………………………………………………………………………..26 Roche/454 GS FLS Titanium Sequencer…………………………….…………………………………………27 Deep Sequencing………………….……………………………………………………………………………28 Illumina Genome Analyzer………………………..………………………………………………………..….29 Applied Bio systems SOLiD………………………………………..………………………………………….30 Helicos Heliscope……………………………………………………..…………………...…………………..30 -
Association of Moderate Beer Consumption with the Gut Microbiota and SCFA of Healthy Adults
molecules Article Association of Moderate Beer Consumption with the Gut Microbiota and SCFA of Healthy Adults Natalia González-Zancada, Noemí Redondo-Useros, Ligia E. Díaz, Sonia Gómez-Martínez , Ascensión Marcos and Esther Nova * Immunonutrition Group, Department of Metabolism and Nutrition, Institute of Food Science, Technology and Nutrition (ICTAN), Spanish National Research Council (CSIC), C/Jose Antonio Novais, 28040 Madrid, Spain; [email protected] (N.G.-Z.); [email protected] (N.R.-U.); [email protected] (L.E.D.); [email protected] (S.G.-M.); [email protected] (A.M.) * Correspondence: [email protected]; Tel.: +34-915492300 Received: 30 September 2020; Accepted: 15 October 2020; Published: 17 October 2020 Abstract: Fermented alcoholic drinks’ contribution to the gut microbiota composition is mostly unknown. However, intestinal microorganisms can use compounds present in beer. This work explored the associations between moderate consumption of beer, microbiota composition, and short chain fatty acid (SCFA) profile. Seventy eight subjects were selected from a 261 healthy adult cohort on the basis of their alcohol consumption pattern. Two groups were compared: (1) abstainers or occasional consumption (ABS) (n = 44; <1.5 alcohol g/day), and (2) beer consumption 70% of total ≥ alcohol (BEER) (n = 34; 200 to 600 mL 5% vol. beer/day; <15 mL 13% vol. wine/day; <15 mL 40% vol. spirits/day). Gut microbiota composition (16S rRNA gene sequencing) and SCFA concentration were analyzed in fecal samples. No differences were found in α and β diversity between groups. The relative abundance of gut bacteria showed that Clostridiaceae was lower (p = 0.009), while Blautia and Pseudobutyrivibrio were higher (p = 0.044 and p = 0.037, respectively) in BEER versus ABS. -
Evaluation of Native Potential Probiotic Bacteria Using an in Vitro Ruminal Fermentation System
Ann Microbiol (2014) 64:1149–1156 DOI 10.1007/s13213-013-0753-3 ORIGINAL ARTICLE Evaluation of native potential probiotic bacteria using an in vitro ruminal fermentation system Martín Fraga & Karen Perelmuter & Maria José Valencia & Marcela Martínez & Andrés Abin-Carriquiry & Cecilia Cajarville & Pablo Zunino Received: 11 July 2013 /Accepted: 29 October 2013 /Published online: 20 November 2013 # Springer-Verlag Berlin Heidelberg and the University of Milan 2013 Abstract Rumen microbiota provides an important source of addition of probiotics to the fermentation system had the protein to grazing animals and produces volatile fatty acids potential to induce metabolic shifts that would result in better (VFA), the main energy source for ruminants generated by energy yields. These results show that native bacteria have fibre fermentation. Probiotics can be used to modulate rumen promising features as fermentation modulators, thereby justi- fermentation, and native microbiota is a source of potentially fying further research to assess their use as probiotics for useful microorganisms. In this work, ruminal bacterial strains ruminants. were isolated and subsequently identified, and their potential to modify fermentation patterns with wheat straw, microcrys- Keywords Rumen . Probiotics . Volatile fatty acids . In vitro talline cellulose and oat xylan as substrates was assessed by gas production . Pseudobutyrivibrio ruminis . in vitro gas production and VFA fermentation patterns. Four Lachnospiraceae of the isolates were identified as Pseudobutyrivibrio ruminis and two corresponded to new members of the Lachnospiraceae family. The addition of one P. rum inis Introduction (strain 50C) and one Lachnospiraceae (strain 21C) to the fermentation system which used wheat straw as the substrate Rumen microbiota is a complex microbial community in significantly increased total VFA concentration without alter- which the domains Bacteria, Archaea and Eukarya coexist. -
Potential of Selected Rumen Bacteria for Cellulose and Hemicellulose Degradation
210 M. ZOREC et al.: Cellulose and Hemicellulose Degradation by Rumen Bacteria, Food Technol. Biotechnol. 52 (2) 210–221 (2014) ISSN 1330-9862 review (FTB-3544) Potential of Selected Rumen Bacteria for Cellulose and Hemicellulose Degradation Ma{a Zorec, Ma{a Vodovnik and Romana Marin{ek-Logar* Department of Animal Science, Biotechnical Faculty, University of Ljubljana, SI-1230 Dom`ale, Slovenia Received: October 22, 2013 Accepted: May 8, 2014 Summary Herbivorous animals harbour potent cellulolytic and hemicellulolytic microorganisms that supply the host with nutrients acquired from degradation of ingested plant material. In addition to protozoa and fungi, rumen bacteria contribute a considerable part in the breakdown of recalcitrant (hemi)cellulosic biomass. The present review is focused on the enzymatic systems of three representative fibrolytic rumen bacteria, namely Ruminococcus flavefaciens, Prevotella bryantii and Pseudobutyrivibrio xylanivorans. R. flavefaciens is known for one of the most elaborated cellulosome architectures and might represent a promising can- didate for the construction of designer cellulosomes. On the other hand, Prevotella bryantii and Pseudobutyrivibrio xylanivorans produce multiple free, but highly efficient xylanases. In addition, P. xylanivorans was also shown to have some probiotic traits, which makes it a promising candidate not only for biogas production, but also as an animal feed supple- ment. Genomic and proteomic analyses of cellulolytic and hemicellulolytic bacterial spe- cies aim to identify novel enzymes, which can then be cloned and expressed in adequate hosts to construct highly active recombinant hydrolytic microorganisms applicable for dif- ferent biotechnological tasks. Key words: rumen bacteria, Ruminococcus flavefaciens, Prevotella bryantii, Pseudobutyrivibrio xylanivorans, cellulosome, xylanase, probiotics Introduction (in the cotton fibres) of the dry mass of plant tissue. -
Systems Genetic Discovery of Host-Microbiome Interactions
bioRxiv preprint doi: https://doi.org/10.1101/349605; this version posted June 18, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Systems genetic discovery of host-microbiome interactions 2 reveals mechanisms of microbial involvement in disease 3 4 5 Running Title: Host genomics, microbial abundance and disease. 6 7 Jason A. Bubier1, Vivek M. Philip1,2, Christopher Quince3, James Campbell4,5, Yanjiao Zhou1 8 Tatiana Vishnivetskaya2, Suman Duvvuru2, Rachel Hageman Blair6, Juliet Ndukum1, Kevin D. 9 Donohue7,8,Charles Phillips9, Carmen M. Foster4, David J. Mellert1, George Weinstock1, 10 Cymbeline T. Culiat2, Erich J. Baker10, Michael A. Langston9, Bruce O’Hara7,11, Anthony V. 11 Palumbo4, Mircea Podar4 and Elissa J. Chesler1,2,4 12 13 14 1The Jackson Laboratory 15 2Genome Science and Technology Program, University of Tennessee and Oak Ridge National 16 Laboratory 17 3School of Engineering, University of Glasgow, Glasgow G12 8LT, UK. 18 4Biosciences Division, Oak Ridge National Laboratory 19 5Department of Natural Sciences, Northwest Missouri State University, Maryville, MO 64468 20 6 Department of Biostatistics, State University of New York at Buffalo, Buffalo, NY 21 7Signal Solutions, LLC, Lexington, KY; 22 8 Electrical and Computer Engineering Department, University of Kentucky, Lexington, KY 23 9 Electrical Engineering and Computer Science, University of Tennessee 24 10School of Engineering & Computer Science, Baylor University, Waco, TX 76798 25 11 Department of Biology, University of Kentucky, Lexington, KY 26 27 Corresponding Author: 28 29 Elissa J.