Homology As a Relation of Correspondence Between Parts of Individuals ~
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Proceedings of the Seventh European Conference on Echinoderms, Göttingen, Germany, 2–9 October 2010
Zoosymposia 7: vii–ix (2012) ISSN 1178-9905 (print edition) www.mapress.com/zoosymposia/ ZOOSYMPOSIA Copyright © 2012 · Magnolia Press ISSN 1178-9913 (online edition) Preface—7th European Conference on Echinoderms MIKE REICH1,2 & JOACHIM REITNER1,2,3 1 Georg-August University of Göttingen, Geoscience Museum & Geopark, Göttingen, Germany; E-mail: [email protected] 2 Georg-August University of Göttingen, Geoscience Centre, Department of Geobiology, Göttingen, Germany 3 Georg-August University of Göttingen, Courant Research Centre Geobiology, Göttingen, Germany *In: Kroh, A. & Reich, M. (Eds.) Echinoderm Research 2010: Proceedings of the Seventh European Conference on Echinoderms, Göttingen, Germany, 2–9 October 2010. Zoosymposia, 7, xii + 316 pp. Since the pioneering meeting in 1979 in Brussels, the European echinoderm community has cele- brated advances in echinoderm science, biology and palaeontology in what has now become a regular conference series (see Ziegler & Kroh 2012, p. 1–24 of this volume). This reflects the interest of the scientific community in the multidisciplinary field of echinoderm research between biology, palae- ontology, physiology, fisheries, aquaculture, medicine and others. The 7th European Conference on Echinoderms (ECE) was held on October 2–9, 2010 (Fig. 1) in Germany, and was hosted by the Georg-August University of Göttingen. The Göttingen University has a long tradition in echinoderm research. A vast number of naturalists, zoologists, palaeontologists, and collectors, like Pehr Forsskål (1732–1769), Peter Simon -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
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Manuscript version: Author’s Accepted Manuscript The version presented in WRAP is the author’s accepted manuscript and may differ from the published version or Version of Record. Persistent WRAP URL: http://wrap.warwick.ac.uk/113725 How to cite: Please refer to published version for the most recent bibliographic citation information. If a published version is known of, the repository item page linked to above, will contain details on accessing it. Copyright and reuse: The Warwick Research Archive Portal (WRAP) makes this work by researchers of the University of Warwick available open access under the following conditions. Copyright © and all moral rights to the version of the paper presented here belong to the individual author(s) and/or other copyright owners. To the extent reasonable and practicable the material made available in WRAP has been checked for eligibility before being made available. Copies of full items can be used for personal research or study, educational, or not-for-profit purposes without prior permission or charge. Provided that the authors, title and full bibliographic details are credited, a hyperlink and/or URL is given for the original metadata page and the content is not changed in any way. Publisher’s statement: Please refer to the repository item page, publisher’s statement section, for further information. For more information, please contact the WRAP Team at: [email protected]. warwick.ac.uk/lib-publications Systematicity in Kant’s third Critique Andrew Cooper – [email protected] Penultimate draft – please refer to published version: https://www.pdcnet.org/idstudies/content/idstudies_2019_0999_1_14_83 Idealistic Studies 47(3), 2019 Abstract: Kant’s Critique of the Power of Judgment is often interpreted in light of its initial reception. -
Evolution by Natural Selection, Formulated Independently by Charles Darwin and Alfred Russel Wallace
UNIT 4 EVOLUTIONARY PATT EVOLUTIONARY E RNS AND PROC E SS E Evolution by Natural S 22 Selection Natural selection In this chapter you will learn that explains how Evolution is one of the most populations become important ideas in modern biology well suited to their environments over time. The shape and by reviewing by asking by applying coloration of leafy sea The rise of What is the evidence for evolution? Evolution in action: dragons (a fish closely evolutionary thought two case studies related to seahorses) 22.1 22.4 are heritable traits that with regard to help them to hide from predators. The pattern of evolution: The process of species have changed evolution by natural and are related 22.2 selection 22.3 keeping in mind Common myths about natural selection and adaptation 22.5 his chapter is about one of the great ideas in science: the theory of evolution by natural selection, formulated independently by Charles Darwin and Alfred Russel Wallace. The theory explains how T populations—individuals of the same species that live in the same area at the same time—have come to be adapted to environments ranging from arctic tundra to tropical wet forest. It revealed one of the five key attributes of life: Populations of organisms evolve. In other words, the heritable characteris- This chapter is part of the tics of populations change over time (Chapter 1). Big Picture. See how on Evolution by natural selection is one of the best supported and most important theories in the history pages 516–517. of scientific research. -
Many but Not All Lineage-Specific Genes Can Be Explained by Homology Detection Failure
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.27.968420; this version posted April 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Many but not all lineage-specific genes can be explained by homology detection failure Caroline M. Weisman1, Andrew W. Murray1, Sean R. Eddy1,2,3 1 Department of Molecular & Cellular Biology, 2 Howard Hughes Medical Institute, 3 John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge MA, USA Abstract Genes for which homologs can be detected only in a limited group of evolutionarily related species, called “lineage-specific genes,” are pervasive: essentially every lineage has them, and they often comprise a sizable fraction of the group’s total genes. Lineage-specific genes are often interpreted as “novel” genes, representing genetic novelty born anew within that lineage. Here, we develop a simple method to test an alternative null hypothesis: that lineage-specific genes do have homologs outside of the lineage that, even while evolving at a constant rate in a novelty-free manner, have merely become undetectable by search algorithms used to infer homology. We show that this null hypothesis is sufficient to explain the lack of detected homologs of a large number of lineage-specific genes in fungi and insects. However, we also find that a minority of lineage-specific genes in both clades are not well-explained by this novelty- free model. -
Copyrighted Material
Chapter 1 History Systematics has its origins in two threads of biological science: classification and evolution. The organization of natural variation into sets, groups, and hierarchies traces its roots to Aristotle and evolution to Darwin. Put simply, systematization of nature can and has progressed in absence of causative theories relying on ideas of “plan of nature,” divine or otherwise. Evolutionists (Darwin, Wallace, and others) proposed a rationale for these patterns. This mixture is the foundation of modern systematics. Originally, systematics was natural history. Today we think of systematics as being a more inclusive term, encompassing field collection, empirical compar- ative biology, and theory. To begin with, however, taxonomy, now known as the process of naming species and higher taxa in a coherent, hypothesis-based, and regular way, and systematics were equivalent. Roman bust of Aristotle (384–322 BCE) 1.1 Aristotle Systematics as classification (or taxonomy) draws its Western origins from Aris- totle1. A student of Plato at the Academy and reputed teacher of Alexander the Great, Aristotle founded the Lyceum in Athens, writing on a broad variety of topics including what we now call biology. To Aristotle, living things (species) came from nature as did other physical classes (e.g. gold or lead). Today, we refer to his classification of living things (Aristotle, 350 BCE) that show simi- larities with the sorts of classifications we create now. In short, there are three featuresCOPYRIGHTED of his methodology that weMATERIAL recognize immediately: it was functional, binary, and empirical. Aristotle’s classification divided animals (his work on plants is lost) using Ibn Rushd (Averroes) functional features as opposed to those of habitat or anatomical differences: “Of (1126–1198) land animals some are furnished with wings, such as birds and bees.” Although he recognized these features as different in aspect, they are identical in use. -
Convergent Evolution
Exploring the KU Natural History Museum Convergent Evolution Target Audience: Middle school and above Differentiated Instruction Summary Strategy Levels Content/Process/Product Grouping(s) Learning modalities Whole group • Level 1 – Visual (spatial) Small groups Process Cubing Level 2 – Kinesthetic (physical) Peer partners • Product • Level 3 – Verbal (linguistic) Homogeneous Heterogeneous * Varied grouping options can be used for this activity, depending on student needs and chaperone ability. Objectives: Explore examples of convergent evolution in vertebrates. Pre-assessment/Prior Knowledge: Prior to their visit, students should be familiar with the idea of convergent evolution, overall evolutionary relationships/classification of vertebrate groups and basic anatomy of those groups. Activity Description: Students explore the idea of convergent evolution through museum exhibits through different learning modalities. Materials Needed: • Student o Cubes (three levels, see attached) o Paper and pencils (alternatively you could use flipchart paper and markers, whiteboards and dry erase markers) o Optional (cell phones or other recording device for visual or kinesthetic levels) Note: Format to record/present findings determined by individual teacher. Provide clear instructions about expectations for documenting participation, particularly for verbal/spatial and body/kinesthetic levels (e.g. stage direction, audio/video recording). • Teacher o Content Outline o Cube labels o Cube template Content: Convergence Overview Convergent evolution refers to the similarities in biological traits that arise independently in organisms that are not closely related, e.g. wings in birds, bats and insects. Similarity among organisms and their structures that was not inherited from a common ancestor is considered to be homoplasy. This can be contrasted with homology, which refers to similarity of traits due to common ancestry. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Ernst Haeckel's Embryological Illustrations
Pictures of Evolution and Charges of Fraud Ernst Haeckel’s Embryological Illustrations By Nick Hopwood* ABSTRACT Comparative illustrations of vertebrate embryos by the leading nineteenth-century Dar- winist Ernst Haeckel have been both highly contested and canonical. Though the target of repeated fraud charges since 1868, the pictures were widely reproduced in textbooks through the twentieth century. Concentrating on their first ten years, this essay uses the accusations to shed light on the novelty of Haeckel’s visual argumentation and to explore how images come to count as proper representations or illegitimate schematics as they cross between the esoteric and exoteric circles of science. It exploits previously unused manuscripts to reconstruct the drawing, printing, and publishing of the illustrations that attracted the first and most influential attack, compares these procedures to standard prac- tice, and highlights their originality. It then explains why, though Haeckel was soon ac- cused, controversy ignited only seven years later, after he aligned a disciplinary struggle over embryology with a major confrontation between liberal nationalism and Catholicism—and why the contested pictures nevertheless survived. INETEENTH-CENTURY IMAGES OF EVOLUTION powerfully and controversially N shape our view of the world. In 1997 a British developmental biologist accused the * Department of History and Philosophy of Science, University of Cambridge, Free School Lane, Cambridge CB2 3RH, United Kingdom. Research for this essay was supported by the Wellcome Trust and partly carried out in the departments of Lorraine Daston and Hans-Jo¨rg Rheinberger at the Max Planck Institute for the History of Science. My greatest debt is to the archivists of the Ernst-Haeckel-Haus, Jena: the late Erika Krauße gave generous help and invaluable advice over many years, and Thomas Bach, her successor as Kustos, provided much assistance with this project. -
Evolution of the Muscular System in Tetrapod Limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2
Hirasawa and Kuratani Zoological Letters (2018) 4:27 https://doi.org/10.1186/s40851-018-0110-2 REVIEW Open Access Evolution of the muscular system in tetrapod limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2 Abstract While skeletal evolution has been extensively studied, the evolution of limb muscles and brachial plexus has received less attention. In this review, we focus on the tempo and mode of evolution of forelimb muscles in the vertebrate history, and on the developmental mechanisms that have affected the evolution of their morphology. Tetrapod limb muscles develop from diffuse migrating cells derived from dermomyotomes, and the limb-innervating nerves lose their segmental patterns to form the brachial plexus distally. Despite such seemingly disorganized developmental processes, limb muscle homology has been highly conserved in tetrapod evolution, with the apparent exception of the mammalian diaphragm. The limb mesenchyme of lateral plate mesoderm likely plays a pivotal role in the subdivision of the myogenic cell population into individual muscles through the formation of interstitial muscle connective tissues. Interactions with tendons and motoneuron axons are involved in the early and late phases of limb muscle morphogenesis, respectively. The mechanism underlying the recurrent generation of limb muscle homology likely resides in these developmental processes, which should be studied from an evolutionary perspective in the future. Keywords: Development, Evolution, Homology, Fossils, Regeneration, Tetrapods Background other morphological characters that may change during The fossil record reveals that the evolutionary rate of growth. Skeletal muscles thus exhibit clear advantages vertebrate morphology has been variable, and morpho- for the integration of paleontology and evolutionary logical deviations and alterations have taken place unevenly developmental biology. -
The 'Role' a Concept Plays in Science — the Case of Homology
The ‘Role’ a Concept Plays in Science — The Case of Homology INGO BRIGANDT Department of History and Philosophy of Science University of Pittsburgh 1017 Cathedral of Learning Pittsburgh, PA 15260 USA E-mail: [email protected] August 19, 2001 Abstract. This article tries to clarify the idea that a concept plays a certain role for a scientific field or a research program. The discussion is based on a case study of the homology concept in biology. In particular, I examine how homology plays a different role for comparative, developmental, and molecular biology. The aspects that may constitute the role of a concept emerge from this discussion. Introduction This paper deals with concepts and conceptual change in science by trying to shed some light on the idea that a concept plays a certain ‘role’ for a scientific field or a research approach. My original motivation to address this topic stems from semantic considerations. I disagree with standard causal theories of reference because they do not take conceptual change in science and its reasons seriously. Causal theories often have a somewhat static (in fact preformationist) understanding of concepts (our belief about the referent is usually considered to change), and they often look to the wrong place if they have to account for apparent changes in meaning. Instead, my idea is to focus on the role a concept plays — when the role of a scientific concept changes, then we have a change in meaning of this term. This is an approach that is neither a THE ‘ROLE’ A CONCEPT PLAYS IN SCIENCE 2 causal nor a descriptive theory of reference, and it is able to keep change of meaning and change of theory apart — not every change of theory amounts to a new role for a concept. -
Body Plans and the Diversity of Life
Body Plans and the Diversity of Life 36-149 The Tree of Life Christopher R. Genovese Department of Statistics 132H Baker Hall x8-7836 http://www.stat.cmu.edu/~genovese/ . The Body Plan Concept • Body plans form an idealized, overlapping hierarchy of \types" containing groups of organisms. • Analogy: Watersheds • These relate strongly to intuitive/folk categories of living things. • They also relate to features during the gestational development of the organism. • We will see that the concept has critical limitations, but it is a useful starting point in our thinking about how to organize life's diversity. 36-149 The Tree of Life Class #1 -1- Two Inspirations for the \Body Plan" Concept 1. In the 1840s, Richard Owen noticed the similar structures underlying the organs and bones of different species. He saw these similarities as the manifestation of an \archetype" { an idealized, standard body plan for a group of animals. (Owen was one of the premier comparative anatomists of his day, the namer of Dinosaurs, and a character we'll meet again.) 36-149 The Tree of Life Class #1 -2- 36-149 The Tree of Life Class #1 -3- 36-149 The Tree of Life Class #1 -4- Two Inspirations for \Body Plan" (cont'd) 2. In the late 1820s, Karl Ernst von Baer studied the development of animal embryos and concluded that \[t]he general features of a large group of animals appear earlier in the embryo than the special features." That is, in the early states of embryonic development, related animals are highly similar, but they diverge as development proceeds and distinguishing features are added.