FAU Institutional Repository
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Bacteria Associated with Tunicate, Polycarpa Aurata, from Lease Sea, Maluku, Indonesia Exhibiting Anti-Multidrug Resistant Bacteria
BIODIVERSITAS ISSN: 1412-033X Volume 20, Number 4, April 2019 E-ISSN: 2085-4722 Pages: 956-964 DOI: 10.13057/biodiv/d200404 Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria DIAH AYUNINGRUM1,5, RHESI KRISTIANA1, AYUNDA AINUN NISA2, SEPTHY KUSUMA RADJASA2, SAKTI IMAM MUCHLISSIN2,4, OCKY KARNA RADJASA2,3, AGUS SABDONO2, AGUS TRIANTO2, 1Department of Coastal Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia 2Department of Marine Science, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedarto, SH, Tembalang, Semarang 50275, Central Java, Indonesia. Tel.: +62-24-7474698, Fax.: +62-24-7474698, email: [email protected]. 3Directorate of Research and Community Services, Ministry of Research, Technology and Higher Education. D Building, Jl. Jenderal Sudirman Pintu Satu, Senayan, Jakarta Pusat 10279, Indonesia 4Tropical Marine Biotechnology Laboratory, Universitas Diponegoro Jl. Lingkar Utara Undip, Semarang 50275, Central Java, Indonesia 1Department of Aquatic Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia Manuscript received: 30 January 2019. Revision accepted: 10 March 2019. Abstract. Ayuningrum D, Kristiana R, Nisa AA, Radjasa SK, Muchlissin SI, Radjasa OK, Sabdono A, Trianto A. 2019. Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria. Biodiversitas 20: 956-964. Tunicate is a rich secondary metabolites producer with various biological activities whether as an original producer or produced by the associated microorganisms. In this study, a total of 11 tunicate specimens were identified as Polycarpa aurata with four color variations based on morphological characteristic and COI gene identification and BLAST analysis. -
Grebmeier, Jacqueline M., Lee W.Cooper, and Michael J
Limnol. Oceanogr., 35(S), 1990, 1 182-1195 0 1990, by the American Society of Limnology and Oceanography, Inc. Oxygen isotopic composition of bottom seawater and tunicate cellulose used as indicators of water masses in the northern Bering and Chukchi Seas Abstract -Oxygen isotopic composition of rivers, evaporated surface ocean waters, bottom seawater and tunicate cellulose were used melting glaciers, and melting sea ice can be as short-term and long-term indicators, respec- tively, of water-mass characteristics in the north- separated and water types characterized (e.g. ern Bering and Chukchi Seas. Oxygen isotopic Epstein and Mayeda 1953; Tan and Strain composition of northeastern Bering Sea waters is 1980; Bedard et al. 198 1). In contrast to the influenced by Yukon River inflows of IsO-de- variability in the surface ocean, average 180 : pleted continental water mixing with relatively 180-enriched waters contributed by the Anadyr 160 ratios for the deep (> 500 m) sea vary Current. Tunicate cellulose sampled under Alas- by < 1%~ when expressed in the conven- ka coastal water is more depleted in IsO than that tional 6 notation: collected under Bering shelf and Anadyr waters, which reflects the oxygen isotopic composition 6180 = (Rstd/R,mple- 1) X 1030/oo (1) of these waters. Tunicate cellulose collected un- der the mixed Bering shelf water displays inter- where R = 180 : l 6O and std is Standard Mean mediate 6180 values. Oxygen isotopic analyses of Ocean Water (SMOW). The low variability bottom seawater were used to determine the spa- in V80 values of waters in the deep sea has tial location and influence of continental and led to widespread use of oxygen isotopes as coastal-derived precipitation and of sea-ice for- mation on water-mass structure on the continen- a paleothermometric indicator. -
Temperature and Salinity Sensitivity of the Invasive Ascidian Microcosmus Exasperatus Heller, 1878
Aquatic Invasions (2016) Volume 11, Issue 1: 33–43 DOI: http://dx.doi.org/10.3391/ai.2016.11.1.04 Open Access © 2016 The Author(s). Journal compilation © 2016 REABIC Research Article Temperature and salinity sensitivity of the invasive ascidian Microcosmus exasperatus Heller, 1878 1 1,2 Lilach Raijman Nagar and Noa Shenkar * 1Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Tel Aviv, 69978, Israel 2The Steinhardt Museum of Natural History and National Research Center, Tel Aviv University, Tel Aviv, Israel *Corresponding author E-mail: [email protected] Received: 5 May 2015 / Accepted: 24 November 2015 / Published online: 30 December 2015 Handling editor: Vadim Panov Abstract Environmental factors, such as temperature and salinity, are known to influence distribution patterns and invasion success in ascidians. The solitary ascidian Microcosmus exasperatus Heller, 1878 has a wide global distribution and can be found in both tropical and sub-tropical waters. In the Mediterranean Sea, it is considered to be an invasive species introduced through the Suez Canal, with a restricted distribution in the eastern Mediterranean. Despite its global distribution, the environmental tolerances of this species are poorly known. We examined the effect of varying temperature and salinity on the survival of adult individuals of M. exasperatus in a laboratory setting to partially determine its environmental tolerance range. In addition, it’s global and local distribution as well as the seasonal abundance in ‘Akko Bay (northern Mediterranean coast of Israel) were examined. Field observations and laboratory experiments show that M. exasperatus is able to tolerate a temperature range of 12–30 ºC, and salinity of 37–45, but it survived poorly in salinity of 33–35 and temperatures > 32 ºC. -
Life-History Strategies of a Native Marine Invertebrate Increasingly Exposed to Urbanisation and Invasion
Temporal Currency: Life-history strategies of a native marine invertebrate increasingly exposed to urbanisation and invasion A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Zoology University of Canterbury New Zealand Jason Suwandy 2012 Contents List of Figures ......................................................................................................................................... iii List of Tables .......................................................................................................................................... vi Acknowledgements ............................................................................................................................... vii Abstract ................................................................................................................................................ viii CHAPTER ONE - General Introduction .................................................................................................... 1 1.1 Marine urbanisation and invasion ................................................................................................ 2 1.2 Successful invasion and establishment of populations ................................................................ 4 1.3 Ascidians ....................................................................................................................................... 7 1.4 Native ascidians as study organisms ............................................................................................ -
Oikopleura Dioica: a Plankton Predator That
Flexibility of gene arangement in the genome of Oikopleura dioica Charles Plessy and the Luscombe Laboratory (group authorship). Okinawa Institute of Science and Technology Graduate University (OIST) 1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495 Oikopleura dioica in brief: - Japanese name: オタマボヤ Oikopleura dioica: a plankton predator that: - Oikopleura dioica is a globally distributed marine animal. It is evolutionarily closer to human than are lives in a house has a muscular tail, never sleeps and releases model organisms such as yeast, nematodes or fruit flies. As it belongs to the chordate phylum it has made with cellulose for flowing food to its mouth its gametes in only 5 days features common with vertebrate embryonic development, such as a dorsal nerve cord, or the formation of a muscular tail supported by a notochord. - Ecological importance: O. dioica is a small filter feeder that can account for up to 10 % of the total carbon mass in an area. It eats unicellular plankton and was reported to be able to ingest bacterial viruses and microplastics as well. Being an extremely efficient predator, it has an important role in the carbon chain, by producing organic matter (fecal pellet and "houses") that sediment to the sea floor. - Evolution: as it belongs to the tunicate phylum, it is among the invertebrates that are evolutionary closest to humans. Tunicates, like vertebrates are chordates: they have a muscular tail. They also have a brain, a heart, a gut, etc. - Compact genome: only 70 Mb. Nevertheless, it contains 18,020 predicted genes, which makes it an intersting model to study how to compactly encode functions homologous to some found in vertebrates. -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
Tunicate Mitogenomics and Phylogenetics: Peculiarities of the Herdmania Momus Mitochondrial Genome and Support for the New Chordate Phylogeny
Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny. Tiratha Raj Singh, Georgia Tsagkogeorga, Frédéric Delsuc, Samuel Blanquart, Noa Shenkar, Yossi Loya, Emmanuel Douzery, Dorothée Huchon To cite this version: Tiratha Raj Singh, Georgia Tsagkogeorga, Frédéric Delsuc, Samuel Blanquart, Noa Shenkar, et al.. Tu- nicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.. BMC Genomics, BioMed Central, 2009, 10, pp.534. 10.1186/1471-2164-10-534. halsde-00438100 HAL Id: halsde-00438100 https://hal.archives-ouvertes.fr/halsde-00438100 Submitted on 2 Dec 2009 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. BMC Genomics BioMed Central Research article Open Access Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny Tiratha Raj Singh†1, Georgia Tsagkogeorga†2, Frédéric Delsuc2, Samuel Blanquart3, Noa -
Ascidiacea (Chordata: Tunicata) of Greece: an Updated Checklist
Biodiversity Data Journal 4: e9273 doi: 10.3897/BDJ.4.e9273 Taxonomic Paper Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist Chryssanthi Antoniadou‡, Vasilis Gerovasileiou§§, Nicolas Bailly ‡ Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece § Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Greece Corresponding author: Chryssanthi Antoniadou ([email protected]) Academic editor: Christos Arvanitidis Received: 18 May 2016 | Accepted: 17 Jul 2016 | Published: 01 Nov 2016 Citation: Antoniadou C, Gerovasileiou V, Bailly N (2016) Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist. Biodiversity Data Journal 4: e9273. https://doi.org/10.3897/BDJ.4.e9273 Abstract Background The checklist of the ascidian fauna (Tunicata: Ascidiacea) of Greece was compiled within the framework of the Greek Taxon Information System (GTIS), an application of the LifeWatchGreece Research Infrastructure (ESFRI) aiming to produce a complete checklist of species recorded from Greece. This checklist was constructed by updating an existing one with the inclusion of recently published records. All the reported species from Greek waters were taxonomically revised and cross-checked with the Ascidiacea World Database. New information The updated checklist of the class Ascidiacea of Greece comprises 75 species, classified in 33 genera, 12 families, and 3 orders. In total, 8 species have been added to the previous species list (4 Aplousobranchia, 2 Phlebobranchia, and 2 Stolidobranchia). Aplousobranchia was the most speciose order, followed by Stolidobranchia. Most species belonged to the families Didemnidae, Polyclinidae, Pyuridae, Ascidiidae, and Styelidae; these 4 families comprise 76% of the Greek ascidian species richness. The present effort revealed the limited taxonomic research effort devoted to the ascidian fauna of Greece, © Antoniadou C et al. -
Phylum Chordata Bateson, 1885
Checklist of the Invertebrate Chordata and the Hemichordata of British Columbia (Tunicates and Acorn Worms) (August, 2009) by Aaron Baldwin, PhD Candidate School of Fisheries and Ocean Science University of Alaska, Fairbanks E-mail [email protected] The following checklist contains species in the chordate subphylum Tunicata and the acorn worms which have been listed as found in British Columbia. This list is certainly incomplete. The taxonomy follows that of the World Register of Marine Species (WoRMS database, www.marinespecies.org) and the Integrated Taxonomic Information System (ITIS, www.itis.gov). For several families and higher taxa I was unable to locate author's names so have left these blank. Common names are mainly from Lamb and Hanby (2005). Phylum Chordata Bateson, 1885 Subpylum Tunicata Class Ascidacea Nielsen, 1995 Order Entergona Suborder Aplousobranchia Family Cionidae Genus Ciona Fleming, 1822 Ciona savignyi Herdman, 1882 Family Clavelinidae Genus Clavelina Savigny, 1816 Clavelina huntsmani Van Name, 1931 Family Didemnidae Genus Didemnum Savigny, 1816 Didemnum carnulentum Ritter and Forsyth, 1917 Didenmum sp (Lamb and Hanby, 2005) INV Genus Diplosoma Macdonald, 1859 Diplosoma listerianum (Milne-Edwards, 1841) Genus Trididemnum delle Valle, 1881 Trididemnum alexi Lambert, 2005 Family Holozoidae Genus Distaplia delle Valle, 1881 Distaplia occidentalis Bancroft, 1899 Distaplia smithi Abbot and Trason, 1968 Family Polycitoridae Genus Cystodytes von Drasche, 1884 Cystodytes lobatus (Ritter, 1900) Genus Eudistoma Caullery, 1909 -
Ascidian News #87 June 2021
ASCIDIAN NEWS* Gretchen Lambert 12001 11th Ave. NW, Seattle, WA 98177 206-365-3734 [email protected] home page: http://depts.washington.edu/ascidian/ Number 87 June 2021 Well, here we are still in this pandemic! I asked how you all are and again received many responses. A number are included in the next two sections. Nearly everyone still expresses confidence at having met the challenges and a great feeling of accomplishment even though tired of the whole thing; congratulations to you all! There are 117 new publications since December! Thanks to so many for the contributions and for letting me know how important AN continues to be. Please keep in touch and continue to send me contributions for the next issue. Keep safe, keep working, and good luck to everyone. *Ascidian News is not part of the scientific literature and should not be cited as such. NEWS AND VIEWS 1. From Hiroki Nishida ([email protected]) : In Japan, we are very slow to be vaccinated, but the labs are ordinarily opened and we can continue working. Number of patients are gradually increasing though and we are waiting for vaccines. I have to stay in my home and the lab. Postponement of 11th ITM (International Tunicate Meeting) This is an announcement about 11th ITM that had been planned to be held in July 2021 in Kobe, Japan. It is postponed by a year because of the global spread of COVID-19. We had an 11th ITM board meeting, and came to the conclusion that we had to reschedule it for July 2022 at the same venue (Konan University, Kobe, Japan) and similar dates (July 11 to 16). -
1 Phylogeny of the Families Pyuridae and Styelidae (Stolidobranchiata
* Manuscript 1 Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) 2 inferred from mitochondrial and nuclear DNA sequences 3 4 Pérez-Portela Ra, b, Bishop JDDb, Davis ARc, Turon Xd 5 6 a Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 7 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 8 9 b Marine Biological Association of United Kingdom, The Laboratory Citadel Hill, PL1 10 2PB, Plymouth, UK, and School of Biological Sciences, University of Plymouth PL4 11 8AA, Plymouth, UK 12 13 c School of Biological Sciences, University of Wollongong, Wollongong NSW 2522 14 Australia 15 16 d Centre d’Estudis Avançats de Blanes (CSIC), Accés a la Cala St. Francesc 14, Blanes, 17 Girona, E-17300, Spain 18 19 Email addresses: 20 Bishop JDD: [email protected] 21 Davis AR: [email protected] 22 Turon X: [email protected] 23 24 Corresponding author: 25 Rocío Pérez-Portela 26 Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 27 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 28 Phone: + 351 21 8811226 29 Fax: + 351 21 8860954 30 [email protected] 31 1 32 Abstract 33 34 The Order Stolidobranchiata comprises the families Pyuridae, Styelidae and Molgulidae. 35 Early molecular data was consistent with monophyly of the Stolidobranchiata and also 36 the Molgulidae. Internal phylogeny and relationships between Styelidae and Pyuridae 37 were inconclusive however. In order to clarify these points we used mitochondrial and 38 nuclear sequences from 31 species of Styelidae and 25 of Pyuridae. Phylogenetic trees 39 recovered the Pyuridae as a monophyletic clade, and their genera appeared as 40 monophyletic with the exception of Pyura. -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical.