Parasite Diversity and Coinfection Determine Pathogen Infection Success and Host fitness
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Revealing the Secret Lives of Cryptic Species: Examining the Phylogenetic Relationships of Echinostome Parasites in North America
ARTICLE IN PRESS Molecular Phylogenetics and Evolution xxx (2010) xxx–xxx Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Revealing the secret lives of cryptic species: Examining the phylogenetic relationships of echinostome parasites in North America Jillian T. Detwiler *, David H. Bos, Dennis J. Minchella Purdue University, Biological Sciences, Lilly Hall, 915 W State St, West Lafayette, IN 47907, USA article info abstract Article history: The recognition of cryptic parasite species has implications for evolutionary and population-based stud- Received 10 August 2009 ies of wildlife and human disease. Echinostome trematodes are a widely distributed, species-rich group of Revised 3 January 2010 internal parasites that infect a wide array of hosts and are agents of disease in amphibians, mammals, and Accepted 5 January 2010 birds. We utilize genetic markers to understand patterns of morphology, host use, and geographic distri- Available online xxxx bution among several species groups. Parasites from >150 infected host snails (Lymnaea elodes, Helisoma trivolvis and Biomphalaria glabrata) were sequenced at two mitochondrial genes (ND1 and CO1) and one Keywords: nuclear gene (ITS) to determine whether cryptic species were present at five sites in North and South Cryptic species America. Phylogenetic and network analysis demonstrated the presence of five cryptic Echinostoma lin- Echinostomes Host specificity eages, one Hypoderaeum lineage, and three Echinoparyphium lineages. Cryptic life history patterns were Molecular phylogeny observed in two species groups, Echinostoma revolutum and Echinostoma robustum, which utilized both Parasites lymnaied and planorbid snail species as first intermediate hosts. Molecular evidence confirms that two Trematodes species, E. -
Reproductive and Mate Choice Strategies in the Hermaphroditic
present in the five specimens analyzed miranda was found and thus we could not Analysis of the variability of Drosophila azteca and Dro- sophila athabasca populations revealed by random am- and absent in six D. persimilis and seven increase the sample size of that species. plified polymorphic DNA. J Zool Syst Evol Res 35:159– D. pseudoobscura of different origin. The Here we describe species-specific bands 164. number of specimens analyzed is small for of D. pseudoobscura, D. persimilis, and D. Pascual M, Balanya` J, Latorre A, and Serra L, 1997b. D. miranda, but since the lines used came miranda that discriminate between these Diagnosis of sibling species of Drosophila involved in the colonization of North America by Drosophila subob- from different localities (see Materials and three sibling species. These results, along scura. Mol Ecol 6:293–296. Methods), it can be assumed that these with those of a previous study using D. Powell JR, 1983. Interspecific cytoplasmic gene flow in bands are diagnostic. We estimated the azteca and D. athabasca (Pascual et al. the absence of nuclear gene flow: evidence from Dro- size of species-specific bands observed by 1997b) permit classification of all the spec- sophila. Proc Natl Acad Sci USA 80:492–495. Pascual et al. (1997b) in D. athabasca and imens collected in all samples of the dis- Prakash S, 1977. Genetic divergence in closely related D. azteca. A total of nine bands clearly tribution range of these five Nearctic spe- sibling species Drosophila pseudoobscura, D. persimilis and D. miranda. Evolution 31:14–23. identified D. -
Epidemiology, Diagnosis and Control of Poultry Parasites
FAO Animal Health Manual No. 4 EPIDEMIOLOGY, DIAGNOSIS AND CONTROL OF POULTRY PARASITES Anders Permin Section for Parasitology Institute of Veterinary Microbiology The Royal Veterinary and Agricultural University Copenhagen, Denmark Jorgen W. Hansen FAO Animal Production and Health Division FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 1998 The designations employed and the presentation of material in this publication do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. M-27 ISBN 92-5-104215-2 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying or otherwise, without the prior permission of the copyright owner. Applications for such permission, with a statement of the purpose and extent of the reproduction, should be addressed to the Director, Information Division, Food and Agriculture Organization of the United Nations, Viale delle Terme di Caracalla, 00100 Rome, Italy. C) FAO 1998 PREFACE Poultry products are one of the most important protein sources for man throughout the world and the poultry industry, particularly the commercial production systems have experienced a continuing growth during the last 20-30 years. The traditional extensive rural scavenging systems have not, however seen the same growth and are faced with serious management, nutritional and disease constraints. These include a number of parasites which are widely distributed in developing countries and contributing significantly to the low productivity of backyard flocks. -
The Complete Mitochondrial Genome of Echinostoma Miyagawai
Infection, Genetics and Evolution 75 (2019) 103961 Contents lists available at ScienceDirect Infection, Genetics and Evolution journal homepage: www.elsevier.com/locate/meegid Research paper The complete mitochondrial genome of Echinostoma miyagawai: Comparisons with closely related species and phylogenetic implications T Ye Lia, Yang-Yuan Qiua, Min-Hao Zenga, Pei-Wen Diaoa, Qiao-Cheng Changa, Yuan Gaoa, ⁎ Yan Zhanga, Chun-Ren Wanga,b, a College of Animal Science and Veterinary Medicine, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang Province 163319, PR China b College of Life Science and Biotechnology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang Province 163319, PR China ARTICLE INFO ABSTRACT Keywords: Echinostoma miyagawai (Trematoda: Echinostomatidae) is a common parasite of poultry that also infects humans. Echinostoma miyagawai Es. miyagawai belongs to the “37 collar-spined” or “revolutum” group, which is very difficult to identify and Echinostomatidae classify based only on morphological characters. Molecular techniques can resolve this problem. The present Mitochondrial genome study, for the first time, determined, and presented the complete Es. miyagawai mitochondrial genome. A Comparative analysis comparative analysis of closely related species, and a reconstruction of Echinostomatidae phylogeny among the Phylogenetic analysis trematodes, is also presented. The Es. miyagawai mitochondrial genome is 14,416 bp in size, and contains 12 protein-coding genes (cox1–3, nad1–6, nad4L, cytb, and atp6), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and one non-coding region (NCR). All Es. miyagawai genes are transcribed in the same direction, and gene arrangement in Es. miyagawai is identical to six other Echinostomatidae and Echinochasmidae species. The complete Es. miyagawai mitochondrial genome A + T content is 65.3%, and full- length, pair-wise nucleotide sequence identity between the six species within the two families range from 64.2–84.6%. -
Farm Ponds As Critical Habitats for Native Amphibians
23 January 2002 Melinda G. Knutson Upper Midwest Environmental Sciences Center 2630 Fanta Reed Rd. La Crosse, WI 54603 608-783-7550 ext. 68; FAX 608-783-8058; Email [email protected] Farm Ponds As Critical Habitats For Native Amphibians: Field Season 2001 Interim Report Melinda G. Knutson, William B. Richardson, and Shawn Weick 1USGS Upper Midwest Environmental Sciences Center, 2630 Fanta Reed Rd., La Crosse, WI 54603 [email protected] Executive Summary: We studied constructed farm ponds in the Driftless Area Ecoregion of southeastern Minnesota during 2000 and 2001. These ponds represent potentially significant breeding, rearing, and over-wintering habitat for amphibians in a landscape where natural wetlands are scarce. We collected amphibian, wildlife, invertebrate, and water quality data from 40 randomly-selected farm ponds, 10 ponds in each of 4 surrounding land use classes: row crop agriculture, grazed grassland, ungrazed grassland, and natural wetlands. This report includes chapters detailing information from the investigations we conducted. Manuscripts are in preparation describing our scientific findings and several management and public information documents are in draft form. Each of these components will be peer reviewed during winter 2002, with a final report due to LCMR by June 30, 2002. The USGS has initiated an Amphibian Research and Monitoring Initiative (ARMI) over the last 2 years. We obtained additional funding ($98K) in 2000 and 2001 for the radiotelemetry component of the project via a competitive USGS ARMI grant. Field work will be ongoing in 2002 for this component. USGS Water Resources (John Elder, Middleton, WI) ran pesticide analyses on water samples collected June 2001 from seven of the study ponds. -
ISSUES : DATA SET Parasites
- 1 - TIEE Teaching Issues and Experiments in Ecology - Volume 13, March 2018 ISSUES : DATA SET Parasites – They’re what’s for dinner: Investigating the role of parasites in aquatic food webs Sarah A. Orlofske University of Wisconsin – Stevens Point; [email protected] Field sampling for amphibians and aquatic invertebrates. (Photo courtesy of Clara Boland) THE ECOLOGICAL QUESTION: How does the presence of parasites influence characteristics of freshwater food webs? ECOLOGICAL CONTENT: Food web ecology, wetland communities, parasitism, disease ecology, complex life cycles, network modeling WHAT STUDENTS DO: Students will: TIEE, Volume 13 © 2018 – Sarah A. Orlofske and the Ecological Society of America. Teaching Issues and Experiments in Ecology (TIEE) is a project of the Committee on Diversity and Education of the Ecological Society of America (http://tiee.esa.org). - 2 - TIEE Teaching Issues and Experiments in Ecology - Volume 13, March 2018 evaluate the methodology for collecting and analyzing food web data investigate metadata provided with a well-resolved food web database including parasites explore parasite life cycles and interactions with other species in a food web context formulate research questions and propose hypotheses about how including parasites could influence properties of the entire food web as well as individual taxa. manipulate the food web data set to extract the relevant data, calculate food web metrics, and create figures that illustrate the results discuss their findings and relate it back to key ecological concepts. STUDENT-ACTIVE APPROACHES: Guided inquiry, open-ended inquiry, predict-observe-explain, small group discussion, computer- based projects, calculation SKILLS: ● Hypothesis formation: Generate questions and propose hypotheses about how the inclusion of infectious agents may affect properties of aquatic food webs and individual taxa in those communities. -
Spined Echinostoma Spp.: a Historical Review
ISSN (Print) 0023-4001 ISSN (Online) 1738-0006 Korean J Parasitol Vol. 58, No. 4: 343-371, August 2020 ▣ INVITED REVIEW https://doi.org/10.3347/kjp.2020.58.4.343 Taxonomy of Echinostoma revolutum and 37-Collar- Spined Echinostoma spp.: A Historical Review 1,2, 1 1 1 3 Jong-Yil Chai * Jaeeun Cho , Taehee Chang , Bong-Kwang Jung , Woon-Mok Sohn 1Institute of Parasitic Diseases, Korea Association of Health Promotion, Seoul 07649, Korea; 2Department of Tropical Medicine and Parasitology, Seoul National University College of Medicine, Seoul 03080, Korea; 3Department of Parasitology and Tropical Medicine, and Institute of Health Sciences, Gyeongsang National University College of Medicine, Jinju 52727, Korea Abstract: Echinostoma flukes armed with 37 collar spines on their head collar are called as 37-collar-spined Echinostoma spp. (group) or ‘Echinostoma revolutum group’. At least 56 nominal species have been described in this group. However, many of them were morphologically close to and difficult to distinguish from the other, thus synonymized with the others. However, some of the synonymies were disagreed by other researchers, and taxonomic debates have been continued. Fortunately, recent development of molecular techniques, in particular, sequencing of the mitochondrial (nad1 and cox1) and nuclear genes (ITS region; ITS1-5.8S-ITS2), has enabled us to obtain highly useful data on phylogenetic relationships of these 37-collar-spined Echinostoma spp. Thus, 16 different species are currently acknowledged to be valid worldwide, which include E. revolutum, E. bolschewense, E. caproni, E. cinetorchis, E. deserticum, E. lindoense, E. luisreyi, E. me- kongi, E. miyagawai, E. nasincovae, E. novaezealandense, E. -
Ecology of the Columbia Spotted Frog in Northeastern Oregon
United States Department of Agriculture Ecology of the Columbia Forest Service Pacific Northwest Spotted Frog in Research Station General Technical Northeastern Oregon Report PNW-GTR-640 July 2005 Evelyn L. Bull The Forest Service of the U.S. Department of Agriculture is dedicated to the principle of multiple use management of the Nation’s forest resources for sus- tained yields of wood, water, forage, wildlife, and recreation. Through forestry research, cooperation with the States and private forest owners, and manage- ment of the National Forests and National Grasslands, it strives—as directed by Congress—to provide increasingly greater service to a growing Nation. The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, gender, reli- gion, age, disability, political beliefs, sexual orientation, or marital or family status. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA’s TARGET Center at (202) 720-2600 (voice and TDD). To file a complaint of discrimination, write USDA, Director, Office of Civil Rights, Room 326-W, Whitten Building, 14th and Independence Avenue, SW, Washington, DC 20250-9410 or call (202) 720-5964 (voice and TDD). USDA is an equal opportunity provider and employer. USDA is committed to making the information materials accessible to all USDA customers and employees Author Evelyn L. Bull is a research wildlife biologist, Forestry and Range Sciences Laboratory, 1401 Gekeler Lane, La Grande, OR 97850. Cover photo Columbia spotted frogs at an oviposition site with an egg mass present (lower center of photo). -
Detection of the Parasite Ribeiroia Ondatrae in Water Bodies and Possible Impacts of Malformations in a Frog Host
Detection of the parasite Ribeiroia ondatrae in water bodies and possible impacts of malformations in a frog host. by Johannes Huver A Thesis submitted to the Faculty of Graduate Studies of The University of Manitoba in partial fulfillment of the requirements of the degree of MASTER OF SCIENCE Department of Biological Sciences University of Manitoba Winnipeg Copyright© 2013 by Johannes Huver Abstract This study devised a method to detect Ribeiroia ondatrae (class Trematoda) in water-bodies using environmental DNA (eDNA) collected from filtered water samples from selected ponds in the USA and Canada. Species-specific PCR primers were designed to target the Internal Transcribed Spacer-2 (ITS-2) region of the parasite’s genome. The qualitative PCR method was 70% (n=10) accurate in detecting R. ondatrae in ponds previously found to contain the parasite, while the qPCR method was 88.9% (n=9). To examine how the retinoic acid (RA) pathway gene expression may be perturbed during R. ondatrae infections, leading to limb development abnormalities in the wood frog (Lithobates sylvaticus). Multiple sequence alignments were used to design degenerate PCR primers to eight RA biosynthesis genes, but only two gene fragments were identified using this approach. Without effective primer sets it was not possible to measure changes in gene expression in infected frogs. i Acknowledgements This project has been an exciting and challenging journey that I could not have completed on my own. Above all I would like to thank my project supervisors, Dr. Steve Whyard and Dr. Janet Koprivnikar for taking me under their wings and allowing me to conduct this project and who have provided me with a vast amount of support, knowledge, skill, insight and time. -
Curriculum Vitae L
Curriculum Vitae L. KEALOHA FREIDENBURG ADDRESS 370 Prospect Street School of Forestry & Environmental Studies Phone: (203) 432-5732 Yale University Fax: (203) 432-3929 New Haven, CT 06511 [email protected] EDUCATION 1986-1990 B.A., Biology, Pomona College. 1992-1995 M.S., School of Fisheries, University of Washington. 1997-2003 Ph.D., Department of Ecology & Evolutionary Biology, University of Connecticut. PROFESSIONAL POSITIONS 2012- Lecturer, School of Forestry & Environmental Studies, Yale University 2007-2018 Research Scientist, School of Forestry & Environmental Studies, Yale University. 2010-2011 Adjunct Assistant Professor, Biology Department, Quinnipiac University. 2004-2007 Associate Research Scientist, School of Forestry & Environmental Studies, Yale University. 2003-2006 Lecturer, Department of Ecology & Evolutionary Biology, Yale University. 2004 Visiting Scholar, School of Life Sciences, University of Queensland. 1997-2001 Graduate Teaching Assistant, Department of Ecology & Evolutionary Biology, University of Connecticut. 1996-1997 Teaching Assistant, School of Forestry & Environmental Studies, Yale University. 1996 Program Coordinator, Center for Coastal & Watershed Systems, School of Forestry & Environmental Studies, Yale University. 1994 Fisheries Biologist, National Biological Service, Seattle, Washington. 1991-1992 Fisheries Biologist, U.S. Fish and Wildlife Service, Cook, Washington. LK Freidenburg [email protected] PEER REVIEWED PUBLICATIONS Lambert, M. R., M. S. Smylie, A. J. Roman, L. K. Freidenburg, and D. K. Skelly. 2018. Sexual and somatic development of wood frog tadpoles along a thermal gradient. Journal of Experimental Zoology Part A. 39:1-8. Holgerson, M.A., M. R. Lambert, L. K. Freidenburg, and D. K. Skelly. 2017. Suburbanization alters small pond ecosystems: shifts in nitrogen and food web dynamics. Canadian Journal of Fisheries and Aquatic Sciences. -
The Biology of Echinoparyphium (Trematoda, Echinostomatidae)
DOI: 10.2478/s11686-012-0042-5 © W. Stefan´ski Institute of Parasitology, PAS Acta Parasitologica, 2012, 57(3), 199–210; ISSN 1230-2821 INVITED ARTICLE The biology of Echinoparyphium (Trematoda, Echinostomatidae) Jane E. Huffman and Bernard Fried Department of Biological Sciences, East Stroudsburg, PA 18301; Department of Biology, Lafayette College, Easton, PA. 18042 Abstract Echinoparyphium species are common, widely distributed intestinal parasites causing disease in animals worldwide. Interme- diate hosts include snails, bivalves, and fish, whereas the definitive hosts are mainly birds and mammals. This review exam- ines the significant literature on Echinoparyphium. Descriptive studies, life cycle, experimental and manipulative studies, and biochemical and molecular studies are presented. The influence of environmental factors, and toxic pollutants, are reviewed as well as studies on the pathology of Echinoparyphium. Keywords Biology, Echinoparyphium, Echinostomatidae, Trematoda Introduction small intestine of Fuligula manila (scaup). Dietz (1909) re- viewed the family Echinostomidae (Poche, 1925) and erected The genus Echinoparyphium is an important taxon in the several new genera, including Echinonaryphium. Luhe (1909) family Echinostomidae. Species in this genus are of consid- proposed E. recurvatum (von Linstow, 1873). Echinopa- erable importance in medical, veterinary, and wildlife para- ryphium is a ubiquitous parasite of freshwater snails, tadpoles, sitology. Fried (2001) provided a significant review on all birds, and some -
A Molecular Phylogenetic Study of the Genus Ribeiroia (Digenea): Trematodes Known to Cause Limb Malformations in Amphibians
J. Parasitol., 91(5), 2005, pp. 1040±1045 q American Society of Parasitologists 2005 A MOLECULAR PHYLOGENETIC STUDY OF THE GENUS RIBEIROIA (DIGENEA): TREMATODES KNOWN TO CAUSE LIMB MALFORMATIONS IN AMPHIBIANS Wade D. Wilson, Pieter T. J. Johnson*, Daniel R. Sutherland²,HeÂleÁne Mone³, and Eric S. Loker Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131. e-mail: [email protected] ABSTRACT: Species of Ribeiroia (Trematoda: Psilostomidae) are known to cause severe limb malformations and elevated mor- tality in amphibians. However, little is known regarding the number of species in this genus or its relation to other taxa. Species of Ribeiroia have historically been differentiated by slight differences among their larval stages. To better understand the sys- tematics and biogeography of this genus and their potential relevance to the distribution of malformed amphibians, specimens identi®ed as Ribeiroia were collected across much of the known range, including samples from 5 states in the United States (8 sites) and 2 islands in the Caribbean (Puerto Rico and Guadeloupe). A cercaria from East Africa identi®ed as Cercaria lileta (Fain, 1953), with attributes suggestive of Ribeiroia (possibly R. congolensis), was also examined. The intertranscribed spacer region 2 (ITS-2) of the ribosomal gene complex was sequenced and found to consist of 429 nucleotides (nt) for R. ondatrae (United States) and 427 nt for R. marini (Caribbean), with only 6 base differences noted between the 2 species. The ITS-2 region of C. lileta (429 nt) aligned closely with those of the 2 other Ribeiroia species in a phylogenetic analysis that included related trematode genera.