Disciplinary Divides and Experimental Skill in Animal Behaviour Genetics
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What Are Knockout Mice?
Lecture 37 Knockout mice Lecture 29 Cloning and Expression vectors Lecture 30 Eukaryotic Protein Expression Systems –I Lecture 31 Eukaryotic Protein Expression Systems –II Lecture 32 Eukaryotic Protein Expression Systems –III Lecture 33 Human Gene Therapy Lecture 34 DNA Vaccines Lecture 35 Transgenic Animals Lecture 36 Transgenic Plants Lecture 37 Knockout Mice What are knockout mice? A knockout mouse is a mouse in which a specific gene has been inactivated or “knocked out” by replacing it or disrupting it with an artificial piece of DNA. The loss of gene activity often causes changes in a mouse's phenotype and thus provides valuable information on the function of the gene. Researchers who developed the technology for the creation of knockout mice won Nobel Prize in the year 2007 The Nobel Prize in Physiology or Medicine 2007 was awarded jointly to Mario R. Capecchi, Sir Martin J. Evans and Oliver Smithies "for their discoveries of principles for introducing specific gene modifications in mice by the use of embryonic stem cells". Mario R. Capecchi Sir Martin J. Evans Oliver Smithies The ability to delete or mutate any gene of interest in mice has transformed the landscape of mammalian biology research. Cultivation of embryonic stem (ES) cells – Martin Evans • Gene targeting – Oliver Smithies • Gene knockout – Mario Capecchi Gene correction by Oliver Smithies Targeted correction of a mutant HPRT gene in mouse ES cells. Nature 330:576-8, 1987 This modification of a chosen gene in pluripotent ES cells demonstrates the feasibility of this route to manipulating mammalian genomes in predetermined ways. -------------------------------------------------------------------------------------- Nature. 1985 Sep 19-25;317(6034):230-4. -
The Human Genome Project Focus of the Human Genome Project
TOOLS OF GENETIC RESEARCH THE HUMAN GENOME PROJECT FOCUS OF THE HUMAN GENOME PROJECT The primary work of the Human Genome Project has been to Francis S. Collins, M.D., Ph.D.; produce three main research tools that will allow investigators to and Leslie Fink identify genes involved in normal biology as well as in both rare and common diseases. These tools are known as positional cloning The Human Genome Project is an ambitious research effort aimed at deciphering the chemical makeup of the entire human (Collins 1992). These advanced techniques enable researchers to ge ne tic cod e (i.e. , the g enome). The primary wor k of the search for diseaselinked genes directly in the genome without first having to identify the gene’s protein product or function. (See p ro j e c t i s t o d ev e lop t h r e e r e s e a r c h tool s t h a t w i ll a ll o w the article by Goate, pp. 217–220.) Since 1986, when researchers scientists to identify genes involved in both rare and common 2 diseases. Another project priority is to examine the ethical, first found the gene for chronic granulomatous disease through legal, and social implications of new genetic technologies and positional cloning, this technique has led to the isolation of consid to educate the public about these issues. Although it has been erably more than 40 diseaselinked genes and will allow the identi in existence for less than 6 years, the Human Genome Project fication of many more genes in the future (table 1). -
Fatty-Acid Binding Proteins Modulate Sleep and Enhance Long-Term Memory Consolidation in Drosophila Jason R
Washington University School of Medicine Digital Commons@Becker Open Access Publications 2011 Fatty-acid binding proteins modulate sleep and enhance long-term memory consolidation in Drosophila Jason R. Gerstner University of Wisconsin - Madison William M. Vanderheyden Washington University School of Medicine in St. Louis Paul J. Shaw Washington University School of Medicine in St. Louis Charles F. Landry Scarab Genomics Jerry C. P. Yin University of Wisconsin - Madison Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Part of the Medicine and Health Sciences Commons Recommended Citation Gerstner, Jason R.; Vanderheyden, William M.; Shaw, Paul J.; Landry, Charles F.; and Yin, Jerry C. P., ,"Fatty-acid binding proteins modulate sleep and enhance long-term memory consolidation in Drosophila." PLoS One.,. e15890. (2011). https://digitalcommons.wustl.edu/open_access_pubs/510 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Fatty-Acid Binding Proteins Modulate Sleep and Enhance Long-Term Memory Consolidation in Drosophila Jason R. Gerstner1*¤, William M. Vanderheyden2, Paul J. Shaw2, Charles F. Landry3, Jerry C. P. Yin1,4,5* 1 Department of Genetics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America, 2 Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, Missouri, United States of America, 3 Scarab Genomics, LLC, Madison, Wisconsin, United States of America, 4 Department of Neurology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America, 5 Waisman Center, University of Wisconsin-Madison, Madison, Wisconsin, United States of America Abstract Sleep is thought to be important for memory consolidation, since sleep deprivation has been shown to interfere with memory processing. -
Generation of Mouse Conditional Knockout Alleles in One Step Using the I-GONAD Method
Downloaded from genome.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press Method Generation of mouse conditional knockout alleles in one step using the i-GONAD method Renjie Shang,1,2 Haifeng Zhang,1 and Pengpeng Bi1,2 1Center for Molecular Medicine, University of Georgia, Athens, Georgia 30602, USA; 2Department of Genetics, University of Georgia, Athens, Georgia 30602, USA The Cre/loxP system is a powerful tool for gene function study in vivo. Regulated expression of Cre recombinase mediates precise deletion of genetic elements in a spatially– and temporally–controlled manner. Despite the robustness of this system, it requires a great amount of effort to create a conditional knockout model for each individual gene of interest where two loxP sites must be simultaneously inserted in cis. The current undertaking involves labor-intensive embryonic stem (ES) cell– based gene targeting and tedious micromanipulations of mouse embryos. The complexity of this workflow poses formida- ble technical challenges, thus limiting wider applications of conditional genetics. Here, we report an alternative approach to generate mouse loxP alleles by integrating a unique design of CRISPR donor with the new oviduct electroporation technique i-GONAD. Showing the potential and simplicity of this method, we created floxed alleles for five genes in one attempt with relatively low costs and a minimal equipment setup. In addition to the conditional alleles, constitutive knockout alleles were also obtained as byproducts of these experiments. Therefore, the wider applications of i-GONAD may promote gene func- tion studies using novel murine models. [Supplemental material is available for this article.] Our understanding of the genetic mechanisms of human diseases strains are readily available, generation of the loxP-flanked (floxed) has been largely expanded by loss-of-function studies using engi- alleles is challenging and labor-intensive due to the lack of an effi- neered mouse models. -
2018 Ibangs Meeting: the 20Th Annual Genes, Brain & Behavior Meeting
5/25/2018 Program for Thursday, May 17th 2018 IBANGS MEETING: THE 20TH ANNUAL GENES, BRAIN & BEHAVIOR MEETING WELCOME PROGRAM INDEXES PROGRAM FOR THURSDAY, MAY 17TH Days: next day all days View: session overview talk overview 08:30-16:00 Session FV: Pre-IBANGS Satellite Meeting, Functional Validation for Neurogenetics Location: Phillips Hall in the Siebens building room 1-11. The Siebens building is located at the Downtown Mayo Clinic Campus (not the Mayo Civic Center). Description:The transformative nature of next generation sequencing has changed how neuroscientists approach genomic sequence variation. Highly multiplexed molecular testing is providing an expanded level of information from which to make informed phenotypic predictions. The importance of this is reflected in the unprecedented expansion of genomic testing to determine the basis of neurologic conditions. Genomic testing results in many instances provide a definitive basis of a neurologic condition. However, in almost a high proportion of cases, the genomic sequencing results are confounded by the ambiguity of variants with uncertain clinical significance. Herein lies the key with which institutions will lead in the area of genomic medicine. There exists a critical need to provide a mechanism by which uncertain findings can be functionally characterized and translated into clinically actionable results. It is within thisr ealm that academic societies such as IBANGS can have a substantial and informative role on the future of clinical research and practice. This symposium will introduce the challenges and opportunities that exist in the field of human clinical neurogenetics and follow this with presentations of active work in the field of functional genetic finding validation for neurogenetics with a look to the future of genomic neurogenetics. -
2013 BGA Marseille
2 Behavior Genetics Association The purpose of the Behavior Genetics Association is to promote the scientific study of the interrelationship of genetic mechanisms and behavior, both human and animal; to encourage and aid the education and training of research workers in the field of behavior genetics; and to aid in the dissemination and interpretation to the general public of knowledge concerning the interrelationship of genetics and behavior, and its implications for health and human development and education. For additional information about the Behavior Genetics Association, please contact the Secretary, Valerie Knopik ([email protected]) or visit the website (www.bga.org). EXECUTIVE COMMITTEE Position 2012-2013 2013-2014 President Eric Turkheimer Carol Prescott President-Elect Carol Prescott Paul Lichtenstein Past President Michael Pogue-Geile Eric Turkheimer Secretary Arpana Agrawal Valerie Knopik Treasurer Soo Rhee Soo Rhee Member-at-Large Marleen de Moor Marleen de Moor Member-at-Large Benjamin Neale Benjamin Neale Member-at-Large Tim Bates Matthew Keller 2013 MEETING INFORMATION The 43rd Annual Meeting of the Behavior Genetics Association is being held at Campus Saint Charles Aix Marseille University. Scientific sessions will occur throughout the day June 29 – July 2. The Opening Reception will be in the Garden in front of Amphi Mathématiques Physique (Building 9) from 18:00 to 21:00 on Friday, June 28. The Conference Banquet and Awards Ceremony will be held Monday, July 1 at Fort Ganteaume, beginning with cocktails at 18:30. A Festschrift for Professor Norman Henderson will be held on Tuesday, July 2 in Amphi Mathématiques Physique. Local Hosts: Michèle Carlier and Pierre Roubertoux We thank the following generous contributors to the 2013 student bursaries: Anonymous o Jenae Neiderhiser o Sally Manson Anderson o Michael Pogue-Geile o Timothy Bates o Chandra Reynolds o Norman Henderson o Michael Stallings o Kelly Klump o James R. -
Generation of Knockout Mouse Models of Cyclin-Dependent Kinase Inhibitors by Engineered Nuclease-Mediated Genome Editing
ISSN 1738-6055 (Print) ISSN 2233-7660 (Online) Lab Anim Res 2018: 34(4), 264-269 https://doi.org/10.5625/lar.2018.34.4.264 Generation of knockout mouse models of cyclin-dependent kinase inhibitors by engineered nuclease-mediated genome editing Bo Min Park, Jae-il Roh*, Jaehoon Lee*, Han-Woong Lee* Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul, Korea Cell cycle dysfunction can cause severe diseases, including neurodegenerative disease and cancer. Mutations in cyclin-dependent kinase inhibitors controlling the G1 phase of the cell cycle are prevalent in various cancers. Mice lacking the tumor suppressors p16Ink4a (Cdkn2a, cyclin-dependent kinase inhibitor 2a), p19Arf (an alternative reading frame product of Cdkn2a,), and p27Kip1 (Cdkn1b, cyclin-dependent kinase inhibitor 1b) result in malignant progression of epithelial cancers, sarcomas, and melanomas, respectively. Here, we generated knockout mouse models for each of these three cyclin-dependent kinase inhibitors using engineered nucleases. The p16Ink4a and p19Arf knockout mice were generated via transcription activator-like effector nucleases (TALENs), and p27Kip1 knockout mice via clustered regularly interspaced short palindromic repeats/CRISPR-associated nuclease 9 (CRISPR/Cas9). These gene editing technologies were targeted to the first exon of each gene, to induce frameshifts producing premature termination codons. Unlike preexisting embryonic stem cell-based knockout mice, our mouse models are free from selectable markers or other external gene insertions, permitting more precise study of cell cycle-related diseases without confounding influences of foreign DNA. Keywords: TALEN, CRISPR/Cas9, cyclin-dependent kinase inhibitor Received 20 October 2018; Revised version received 7 December 2018; Accepted 8 December 2018 The cell cycle constitutes a series of events required proteins can cause severe disease [16,25,33]. -
Regulation of Learning by Epha Receptors: a Protein Targeting Study
The Journal of Neuroscience, November 1, 1999, 19(21):9538–9549 Regulation of Learning by EphA Receptors: a Protein Targeting Study R. Gerlai,1 N. Shinsky,1 A. Shih,1 P. Williams,2 J. Winer,2 M. Armanini,1 B. Cairns,3 J. Winslow,1 W.-Q. Gao,1 and H. S. Phillips1 Genentech, Inc., Departments of 1Neuroscience, 2Research BioAssay, and 3Pathology, South San Francisco, California 94080 EphA family receptor tyrosine kinases and their ephrin-A li- spontaneous alternation and context-dependent fear condi- gands are involved in patterning axonal connections during tioning, sensitive to hippocampal function, whereas activation brain development, but until now a role for these molecules in of EphA by infusion of an agonist immunoadhesin results in the mature brain had not been elucidated. Here, we show that enhanced performance on these tasks. Because the two be- both the EphA5 receptor and its ephrin-A ligands (2 and 5) are havioral tasks have different motivational, perceptual, and mo- expressed in the adult mouse hippocampus, and the EphA5 tor requirements, we infer the changes were not caused by protein is present in a phosphorylated form. Because there are these performance factors but rather to cognitive alterations. no pharmacological agents available for EphA receptors, we We also find bidirectional changes in gene expression and in designed recombinant immunoadhesins that specifically bind electrophysiological measures of synaptic efficacy that corre- to the receptor binding site of the ephrin-A ligand (antagonist) late with the behavioral results. Thus, EphA receptors and their or the ligand binding site of the EphA receptor (agonist) and ligands are implicated as mediators of plasticity in the adult thus target EphA function. -
Reproducibility of Behavioral Phenotypes in Mouse Models - a Short History with Critical and Practical Notes
Reproducibility of behavioral phenotypes in mouse models - a short history with critical and practical notes Vootele Voikar Neuroscience Center and Laboratory Animal Center, Helsinki Institute of Life Science Correspondence: Mustialankatu 1 G Helsinki, Finland [email protected] Progress in pre-clinical research is built on endorsed by more than 1000 journals so far, reproducible findings, yet reproducibility has awareness of researchers and the quality of different dimensions and even meanings. Indeed, publications have not been sufficiently improved the terms reproducibility, repeatability, and (13-15). In order to facilitate and enhance replicability are often used interchangeably, implementation of the ARRIVE guidelines, a although each has a distinct definition. Moreover, revised version with exhaustive explanation and reproducibility can be discussed at the level of elaborative documentation was recently published methods, analysis, results, or conclusions (1, 2). (16, 17). Despite these differences in definitions and Paradigm shift. Mice and rats are the most dimensions, the main aim for an individual widely used model animals in basic biomedicine. research group is the ability to develop new However, there has been a drastic change in the studies and hypotheses based on firm and reliable relative use of these two rodent species over time findings from previous experiments. In practice (Figure 1). Historically, the rat was the model of this wish is often difficult to accomplish. In this choice for behavioral studies but from the review, issues affecting reproducibility in the field beginning of 1990s a sharp shift from rats to mice of mouse behavioral phenotyping are discussed. took place. Obviously, this was due to rapid Crisis in reproducibility. -
Generating Mouse Models for Biomedical Research: Technological Advances Channabasavaiah B
© 2019. Published by The Company of Biologists Ltd | Disease Models & Mechanisms (2019) 12, dmm029462. doi:10.1242/dmm.029462 AT A GLANCE Generating mouse models for biomedical research: technological advances Channabasavaiah B. Gurumurthy1,2 and Kevin C. Kent Lloyd3,4,* ABSTRACT recombination in embryonic stem cells has given way to more refined Over the past decade, new methods and procedures have been methods that enable allele-specific manipulation in zygotes. We also developed to generate geneticallyengineered mouse models of human highlight advances in the use of programmable endonucleases that disease. This At a Glance article highlights several recent technical have greatly increased the feasibility and ease of editing the mouse advances in mouse genome manipulation that have transformed genome. Together, these and other technologies provide researchers our ability to manipulate and study gene expression in the mouse. with the molecular tools to functionally annotate the mouse genome We discuss how conventional gene targeting by homologous with greater fidelity and specificity, as well as to generate new mouse models using faster, simpler and less costly techniques. 1Developmental Neuroscience, Munroe Meyer Institute for Genetics and KEY WORDS: CRISPR, Genome editing, Mouse, Mutagenesis Rehabilitation, University of Nebraska Medical Center, Omaha, NE 68106-5915, USA. 2Mouse Genome Engineering Core Facility, Vice Chancellor for Research Office, University of Nebraska Medical Center, Omaha, NE 68106-5915, USA. Introduction 3Department -
Contcenter for Genomic Regul
CONTCENTER FOR GENOMIC REGUL CRG SCIENTIFIC STRUCTURE . 4 CRG MANAGEMENT STRUCTURE . 6 CRG SCIENTIFIC ADVISORY BOARD (SAB) . 8 CRG BUSINESS BOARD . 9 YEAR RETROSPECT BY THE DIRECTOR OF THE CRG: MIGUEL BEATO . 10 GENE REGULATION. 14 p Chromatin and gene expression .....................16 p Transcriptional regulation and chromatin remodelling .....19 p Regulation of alternative pre-mRNA splicing during cell . 22 differentiation, development and disease p RNA interference and chromatin regulation . 26 p RNA-protein interactions and regulation . 30 p Regulation of protein synthesis in eukaryotes . 33 p Translational control of gene expression . 36 DIFFERENTIATION AND CANCER ...........................40 p Hematopoietic differentiation and stem cell biology..........42 p Myogenesis.....................................46 p Epigenetics events in cancer.......................49 p Epithelial homeostasis and cancer ...................52 ENTSATION ANNUAL REPORT 2006 GENES AND DISEASE .................................56 p Genetic causes of disease .............................58 p Gene therapy ......................................63 p Murine models of disease .............................66 p Neurobehavioral phenotyping of mouse models of disease .....68 p Gene function ......................................73 p Associated Core Facility: Genotyping Unit..................76 BIOINFORMATICS AND GENOMICS ..........................80 p Bioinformatics and genomics ...........................82 p Genomic analysis of development and disease ..............86 -
Double-Strand Break Repair Pathways in Dna Structure-Induced Genetic Instability
The Texas Medical Center Library DigitalCommons@TMC The University of Texas MD Anderson Cancer Center UTHealth Graduate School of The University of Texas MD Anderson Cancer Biomedical Sciences Dissertations and Theses Center UTHealth Graduate School of (Open Access) Biomedical Sciences 8-2010 DOUBLE-STRAND BREAK REPAIR PATHWAYS IN DNA STRUCTURE-INDUCED GENETIC INSTABILITY Diem T. Kha Follow this and additional works at: https://digitalcommons.library.tmc.edu/utgsbs_dissertations Part of the Laboratory and Basic Science Research Commons Recommended Citation Kha, Diem T., "DOUBLE-STRAND BREAK REPAIR PATHWAYS IN DNA STRUCTURE-INDUCED GENETIC INSTABILITY" (2010). The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences Dissertations and Theses (Open Access). 76. https://digitalcommons.library.tmc.edu/utgsbs_dissertations/76 This Thesis (MS) is brought to you for free and open access by the The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences at DigitalCommons@TMC. It has been accepted for inclusion in The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences Dissertations and Theses (Open Access) by an authorized administrator of DigitalCommons@TMC. For more information, please contact [email protected]. DOUBLE-STRAND BREAK REPAIR PATHWAYS IN DNA STRUCTURE-INDUCED GENETIC INSTABILITY BY Diem Thi Kha, Bachelor of Science APPROVED: ______________________________ Karen M. Vasquez, Ph.D., Supervisory ______________________________