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Lipopeptides from Cyanobacteria: Structure and Role in a Trophic Cascade
Lipopeptides from Cyanobacteria : structure and role in a trophic cascade Louis Bornancin To cite this version: Louis Bornancin. Lipopeptides from Cyanobacteria : structure and role in a trophic cascade. Other. Université Montpellier, 2016. English. NNT : 2016MONTT202. tel-02478948 HAL Id: tel-02478948 https://tel.archives-ouvertes.fr/tel-02478948 Submitted on 14 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Délivré par Université de Montpellier Préparée au sein de l’école doctorale Sciences Chimiques Balard Et de l’unité de recherche Centre de Recherche Insulaire et Observatoire de l’Environnement (USR CNRS-EPHE-UPVD 3278) Spécialité : Ingénierie des Biomolécules Présentée par Louis BORNANCIN Lipopeptides from Cyanobacteria : Structure and Role in a Trophic Cascade Soutenue le 11 octobre 2016 devant le jury composé de Monsieur Ali AL-MOURABIT, DR CNRS, Rapporteur Institut de Chimie des Substances Naturelles Monsieur Gérald CULIOLI, MCF, Rapporteur Université de Toulon Madame Martine HOSSAERT-MCKEY, DR CNRS, Examinatrice, Centre d’Écologie -
Tampa Bay Benthic Monitoring Program: Status of Middle Tampa Bay: 1993-1998
Tampa Bay Benthic Monitoring Program: Status of Middle Tampa Bay: 1993-1998 Stephen A. Grabe Environmental Supervisor David J. Karlen Environmental Scientist II Christina M. Holden Environmental Scientist I Barbara Goetting Environmental Specialist I Thomas Dix Environmental Scientist II MARCH 2003 1 Environmental Protection Commission of Hillsborough County Richard Garrity, Ph.D. Executive Director Gerold Morrison, Ph.D. Director, Environmental Resources Management Division 2 INTRODUCTION The Environmental Protection Commission of Hillsborough County (EPCHC) has been collecting samples in Middle Tampa Bay 1993 as part of the bay-wide benthic monitoring program developed to (Tampa Bay National Estuary Program 1996). The original objectives of this program were to discern the ―health‖—or ―status‖-- of the bay’s sediments by developing a Benthic Index for Tampa Bay as well as evaluating sediment quality by means of Sediment Quality Assessment Guidelines (SQAGs). The Tampa Bay Estuary Program provided partial support for this monitoring. This report summarizes data collected during 1993-1998 from the Middle Tampa Bay segment of Tampa Bay. 3 METHODS Field Collection and Laboratory Procedures: A total of 127 stations (20 to 24 per year) were sampled during late summer/early fall ―Index Period‖ 1993-1998 (Appendix A). Sample locations were randomly selected from computer- generated coordinates. Benthic samples were collected using a Young grab sampler following the field protocols outlined in Courtney et al. (1993). Laboratory procedures followed the protocols set forth in Courtney et al. (1995). Data Analysis: Species richness, Shannon-Wiener diversity, and Evenness were calculated using PISCES Conservation Ltd.’s (2001) ―Species Diversity and Richness II‖ software. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Central Mediterranean Sea) Subtidal Cliff: a First, Tardy, Report
Biodiversity Journal , 2018, 9 (1): 25–34 Mollusc diversity in Capo d’Armi (Central Mediterranean Sea) subtidal cliff: a first, tardy, report Salvatore Giacobbe 1 & Walter Renda 2 ¹Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Viale F. Stagno d’Al - contres 31, 98166 Messina, Italy; e-mail: [email protected] 2Via Bologna, 18/A, 87032 Amantea, Cosenza, Italy; e-mail: [email protected] ABSTRACT First quantitative data on mollusc assemblages from the Capo d’Armi cliff, at the south en - trance of the Strait of Messina, provided a baseline for monitoring changes in benthic biod- iversity of a crucial Mediterranean area, whose depletion might already be advanced. A total of 133 benthic taxa have been recorded, and their distribution evaluated according to depth and seasonality. Bathymetric distribution showed scanty differences between the 4-6 meters and 12-16 meters depth levels, sharing all the 22 most abundant species. Season markedly affected species composition, since 42 taxa were exclusively recorded in spring and 35 in autumn, contrary to 56 shared taxa. The occurrence of some uncommon taxa has also been discussed. The benthic mollusc assemblages, although sampled in Ionian Sea, showed a clear western species composition, in accordance with literature placing east of the Strait the bound- ary line between western and eastern Mediterranean eco-regions. Opposite, occasional records of six mesopelagic species, which included the first record for this area of Atlanta helicinoi - dea -
Constructional Morphology of Cerithiform Gastropods
Paleontological Research, vol. 10, no. 3, pp. 233–259, September 30, 2006 6 by the Palaeontological Society of Japan Constructional morphology of cerithiform gastropods JENNY SA¨ LGEBACK1 AND ENRICO SAVAZZI2 1Department of Earth Sciences, Uppsala University, Norbyva¨gen 22, 75236 Uppsala, Sweden 2Department of Palaeozoology, Swedish Museum of Natural History, Box 50007, 10405 Stockholm, Sweden. Present address: The Kyoto University Museum, Yoshida Honmachi, Sakyo-ku, Kyoto 606-8501, Japan (email: [email protected]) Received December 19, 2005; Revised manuscript accepted May 26, 2006 Abstract. Cerithiform gastropods possess high-spired shells with small apertures, anterior canals or si- nuses, and usually one or more spiral rows of tubercles, spines or nodes. This shell morphology occurs mostly within the superfamily Cerithioidea. Several morphologic characters of cerithiform shells are adap- tive within five broad functional areas: (1) defence from shell-peeling predators (external sculpture, pre- adult internal barriers, preadult varices, adult aperture) (2) burrowing and infaunal life (burrowing sculp- tures, bent and elongated inhalant adult siphon, plough-like adult outer lip, flattened dorsal region of last whorl), (3) clamping of the aperture onto a solid substrate (broad tangential adult aperture), (4) stabilisa- tion of the shell when epifaunal (broad adult outer lip and at least three types of swellings located on the left ventrolateral side of the last whorl in the adult stage), and (5) righting after accidental overturning (pro- jecting dorsal tubercles or varix on the last or penultimate whorl, in one instance accompanied by hollow ventral tubercles that are removed by abrasion against the substrate in the adult stage). Most of these char- acters are made feasible by determinate growth and a countdown ontogenetic programme. -
Malacologia, 1993, 35(2); 261-313
^;^2_ MALACOLOGIA, 1993, 35(2); 261-313 PHYLOGENETIC RELATIONSHIPS AND GENERIC REVIEW OF THE BITTIINAE (PROSOBRANCHIA: GERITHIOIDEA) Richard S. Houbrick Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. ABSTRACT The anatomy of seven members of the Bittium group is described, clarifying the status of the genus-level taxa comprising it. Bittium reticulatum, the type species of Bittium Gray, is described in depth, thereby establishing criteria for comparisons with other taxa of Bitliinae. The type species of Stylidium Dell and LirobiWum Bartsch, and representatives of Bittiolum Cossmann and Cacozeliana Strand are examined and compared with Bittium, s.s. Results of anatomical studies and a phylogenetic analysis using the Hennig86 and CLADOS programs, with Cehtt)ium as an outgroup, establish monophyly for Bitliinae Cossmann and reveal six different genus-level taxa. A new genus, ittibittium, from the Indo-Pacific, is proposed. Synonymies of each genus- level taxon and representative species examined are presented. Brief accounts of the ecology and zoogeography of each taxon are given. Two taxa formerly attributed to the 6/ff/um-group are herein excluded from it and referred to Cerithium Bruguière. These are Cerithium zebrum Kiener, 1841, and Cerithium boeticum Pease, 1861. The subfamily Bittiinae Cossmann, 1906, is thought to comprise nine genera (four of which were not included in phylogenetic analyses) : Bittium Gray, 1847; Bittiolum Cossmann, 1906; Ittibittium gen. n., Stylidium Dalí, 1907; Lirobit- tium Bartsch, 1911 ; Cacozeliana Strand, 1928; Argyropeza Melvill & Standen, 1901 ; Varicopeza Gründel, 1976; Zebittium Finlay, 1927. The genus Cassiella Gofas, 1987, of uncertain place- ment, is included as a possible member of the group. -
Gastropoda: Mesogastropoda)
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 1969 Taxonomy and Distribution of Western Atlantic Bittium (Gastropoda: Mesogastropoda) Ella May Thomson Wulff College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Marine Biology Commons, Oceanography Commons, and the Systems Biology Commons Recommended Citation Wulff, Ella May Thomson, "Taxonomy and Distribution of Western Atlantic Bittium (Gastropoda: Mesogastropoda)" (1969). Dissertations, Theses, and Masters Projects. Paper 1539617422. https://dx.doi.org/doi:10.25773/v5-ryqw-7q32 This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. TAXONOMY AND DISTRIBUTION OF WESTERN ATLANTIC BITTIUM (GASTROPODA: MESOGASTROPODA) V i r g i n i a :r A Thesis Presented to The Faculty of the School of Marine Science The College of William and Mary in Virginia In Partial Fulfillment of the Requirements for the Degree of Master of Arts By Ella May T. Wulff 1970 <?, a. APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Arts Ella May T. Wulff'' Approved, February 1970 Marvin L. Wass, Ph. D. iJ r nchlivJ^ • Andrews, Ph. D . & J. Norcross, M. S. AC KNGWLE DGEME NTS I would like to extend my gratitude to my major professor, Dr. Marvin L. Wass, for his helpful advice and encouragement throughout this study. -
Reproductive Biology of the Tropical-Subtropical Seagrasses of the Southeastern United States
Reproductive Biology of the Tropical-Subtropical Seagrasses of the Southeastern United States Mark D. Moffler and Michael J. Durako Florida Department of Natural Resources Bureau of Marine Research 100 Eighth Ave., S.E. St. Petersburg, Florida 33701 ABSTRACT Studiesof reproductivebiology in seagrassesof the southeasternUnited States have addressed descriptive morphologyand anatomy,reproductive physiology, seed occurrence,and germination.Halodale wrightii Aschers.,Halophila engelmannii Aschers., Syringodium filiforme Kutz., and Thalassiatestudiaum Banks ex Konig are dioecious;Halophila decipiens Ostenfeld and Ruppiamaritima L. are monoecious.In Halophila johrtsoaii Eiseman, only fernale flowers are known. With the exception of R, maritima, which has hydroanemophilouspollination, these species have hydrophilous pollination. Recent reproductive-ecology studiessuggest that reproductivepatterns are due to phenoplasticresponses and/or geneticadaptation to physico-chemicalenvironmental conditions. Laboratory and field investigationsindicate that reproductive periodicityis temperaturecontrolled, but proposedmechanisms are disputed.Water temperature appears to influencefloral developmentand maybe importantin determiningsubsequent flower densities and fruit/seed production.Flowering under continuouslight in vitro suggeststhat photoperiodplays a limitedrole in floral induction.Flower expression and anthesis,however, may be influencedby photoperiod.Floral morpho- ontogeneticstudies of T. testudinumfield populationsdemonstrated the presenceof early-stageinflorescences -
Patterns of Spatial Variability of Mobile Macro-Invertebrate Assemblages Within a Posidonia Oceanica Meadow R
Journal of Natural History, 2015 Vol. 49, Nos. 41–42, 2559–2581, http://dx.doi.org/10.1080/00222933.2015.1021872 Patterns of spatial variability of mobile macro-invertebrate assemblages within a Posidonia oceanica meadow R. Bedini*, M. Bedini, L. Bonechi and L. Piazzi Istituto di Biologia ed Ecologia Marina, Piombino, Italy (Received 22 April 2013; accepted 22 January 2015; first published online 10 April 2015) The study evaluated patterns of spatial variability of mobile macro-invertebrate assemblages associated with Posidonia oceanica leaves within a meadow at three different depths and three different coastal wave-exposures. A total of 171 taxa was found, among them two Nemertea, 65 Mollusca, 91 Arthropoda, eight Annelida and five Echinodermata. The total number of taxa per sample was higher in intermediate and deep stands than in shallow ones, while no significant differences among coastal wave-exposures were observed. Multivariate analyses detected significant differences in the structure of assemblages in relation to depth and coastal wave-exposure. Mollusca were more abundant in shallow stands, while Crustacea and Echinodermata increased in intermediate and deep stands. Moreover, patterns of spatial variability changed with depth: shallow and inter- mediate assemblages showed high small-scale (tens of metres apart) variability, while deep assemblages showed high variability at intermediate scale (hundreds of metres apart). Keywords: depth; mobile macro-invertebrates; orientation; Posidonia oceanica; spatial variability Introduction Natural systems may vary in space and time, following patterns of organismal distribution (Menge and Olson 1990; Schneider 1994). Moreover, the variability of natural assemblages is scale dependent (Underwood and Chapman 1996; Benedetti- Cecchi 2001; Terlizzi et al. -
Rare Calcareous Microfossils from Middle Miocene Strata, Weddell Sea Off Antarctic Peninsula
vol. 33, no. 3, pp. 275–287, 2012 doi: 10.2478/v10183−012−0015−2 Rare calcareous microfossils from Middle Miocene strata, Weddell Sea off Antarctic Peninsula Wojciech MAJEWSKI1, Ewa OLEMPSKA1, Andrzej KAIM1 and John B. ANDERSON2 1 Institute of Paleobiology, Polish Academy of Sciences, ul. Twarda 51/55, 00−818 Warszawa, Poland <[email protected]> <[email protected]> <[email protected]> 2 Rice University, Department of Earth Science, MS 126, P.O. Box 1892, Houston, TX 77251−1892, USA <[email protected]> Abstract: The calcareous microfossil assemblage from Middle Miocene strata of SHALDRIL Site NBP0602A−5D consists of benthic foraminifera, ostracods, bivalves, and gastropods, and is interpreted as shallow−water. It appears to be reworked but its age is probably similar to the age of the host sediment, which contains only rare, fragmented, agglutinated foraminifera. Most of the calcareous taxa are of uncertain taxonomic affiliation, due to the scarcity of Ceno− zoic microfossils of this age from West Antarctica, and also the very different paleohabitat of this now extinct assemblage. Key words: West Antarctica, benthic foraminifera, ostracods, gastropods, reworking. Introduction Despite being of great value for paleoenvironmental reconstructions and stra− tigraphy, very little is known of calcareous Tertiary microfossils from West Antarctica. Paleogene foraminifera are known only from Seymour Island, where Cretaceous–Paleocene assemblages were reported by Huber (1988), and early Eocene benthic foraminifera by Gaździcki and Majewski (2012). Moreover, Oligocene planktonic (Gaździcki 1989) and Miocene benthic foraminiferal assem− blages (Birkenmajer and Łuczkowska 1987) were described from King George Is− land, South Shetland Islands. Stratigraphically younger, Miocene–Pliocene and Pliocene benthic assemblages were illustrated from James Ross (Jonkers et al. -
Biodiversita' Ed Evoluzione
Alma Mater Studiorum – Università di Bologna DOTTORATO DI RICERCA IN BIODIVERSITA’ ED EVOLUZIONE Ciclo XXIII Settore scientifico-disciplinare di afferenza: BIO/05 ZOOLOGIA MOLLUSCS OF THE MARINE PROTECTED AREA “SECCHE DI TOR PATERNO” Presentata da: Dott. Paolo Giulio Albano Coordinatore Dottorato Relatore Prof.ssa Barbara Mantovani Prof. Francesco Zaccanti Co-relatore Prof. Bruno Sabelli Esame finale anno 2011 to Ilaria and Chiara, my daughters This PhD thesis is the completion of a long path from childhood amateur conchology to scientific research. Many people were involved in this journey, but key characters are three. Luca Marini, director of “Secche di Tor Paterno” Marine Protected Area, shared the project idea of field research on molluscs and trusted me in accomplishing the task. Without his active support in finding funds for the field activities this project would have not started. It is no exaggeration saying I would not have even thought of entering the PhD without him. Bruno Sabelli, my PhD advisor, is another person who trusted me above reasonable expectations. Witness of my childhood love for shells, he has become witness of my metamorphosis to a researcher. Last, but not least, Manuela, my wife, shared my objectives and supported me every single day despite the family challenges we had to face. Many more people helped profusely. I sincerely hope not to forget anyone. Marco Oliverio, Sabrina Macchioni, Letizia Argenti and Roberto Maltini were great SCUBA diving buddies during field activities. Betulla Morello, former researcher at ISMAR-CNR in Ancona, was my guide through the previously unexplored land of non-parametric multivariate statistics. -
Mollusca Fauna from Infralittoral Hard Substrate Assem Blages in the North
Belg..T. Zool., 135 (2): 119-126 July 2005 Mollusca fauna from infralittoral hard substrate assem blages in the North Aegean Sea Chryssanthi Antoniadou1, Drossos Koutsoubas2 and Chariton C. Chintiroglou1 1 Aristotle University, School of Biology, Department of Zoology, P.O. Box 134 Gr-540 06 Thessaloniki, Greece 2 Department of Marine Science, University of the Aegean, 81100, Mytilene, Greece. Corresponding author : C. Chintiroglou, e-mail : chintigl(S?bio.autli.gr ABSTRACT. The spatial distribution of the molluscan fauna from infralittoral hard substrate assemblages in the North Aegean Sea was studied during summer 1997 and 1998. Material was collected from six stations located in Chalkidiki peninsula, plus one in Kavala Gulf. Samples were collected by means of SCUBA diving (5 replicates with a quadrate sampler covering the surface of 400cm2). Examination of the 10917 living molluscs collected revealed 111 species, belonging to three different classes (five Polyplacophora, 85 Gastropoda and 21 Bivalvia). Skeneopsis planorbis, Trapania maculata and Limapontia capitata are reported for the first time as elements of the molluscan fauna in the Eastern Mediterranean or the Aegean Sea, and Callistochiton pachylasmae, Raphitoma leu froyi, Polycera quadrilineata, Phyllaplysia lafonti and Petalifera petalifera as elements in the North Aegean Sea. Multivariate analyses (Cluster and MDS), discriminate the sampling stations into four main groups, indicating, that apart from the rough dispersion of the molluscs, a more homogenous pattem is detectable at the middle part of the lower infralittoral zone. KEY WORDS : Keywords : Molluscs, infralittoral, Aegean Sea, hard substrate, biodiversity INTRODUCTION When considering hard substrate within the infralittoral zone, three different ecological sub-zones can be The term ‘biodiversity’ is recently defined as the col recognized : a high one, which extends from 0 to 2m and lection of genomes, species and ecosystems occurring in a is characterized by the assemblage of photophilic algae, geographically defined region (CBDMS, 1995).