Biology—Its Meaning and Relevance to Mankind
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
By Thesis for the Degree of Doctor of Philosophy
COMPARATIVE ANATOMY AND HISTOCHEMISTRY OF TIIE ASSOCIATION OF PUCCIiVIA POARUM WITH ITS ALTERNATE HOSTS By TALIB aWAID AL-KHESRAJI Department of Botany~ Universiiy of SheffieZd Thesis for the degree of Doctor of Philosophy JUNE 1981 Vol 1 IMAGING SERVICES NORTH Boston Spa, Wetherby West Yorkshire, lS23 7BQ www.bl.uk BEST COpy AVAILABLE. VARIABLE PRINT QUALITY TO MY PARENTS i Ca.1PARATIVE ANATCl1Y AND HISTOCHEMISTRY OF THE ASSOCIATION OF PUCCINIA POARUM WITH ITS ALTERNATE HOSTS Talib Owaid Al-Khesraji Depaptment of Botany, Univepsity of Sheffield The relationship of the macrocyclic rust fungus PUccinia poarum with its pycnial-aecial host, Tussilago fapfaPa, and its uredial-telial host, Poa ppatensis, has been investigated, using light microscopy, electron microscopy and micro-autoradiography. Aspects of the morp hology and ontogeny of spores and sari, which were previously disputed, have been clarified. Monokaryotic hyphae grow more densely in the intercellular spaces of Tussilago leaves than the dikaryotic intercellular hyphae on Poa. Although ultrastructurally sbnilar, monokaryotic hyphae differ from dikaryotic hyphae in their interaction with host cell walls, often growing embedded in wall material which may project into the host cells. The frequency of penetration of Poa mesophyll cells by haustoria of the dikaryon is greater than that of Tussilago cells by the relatively undifferentiated intracellular hyphae of the monokaryon. Intracellular hyphae differ from haustoria in their irregular growth, septation, lack of a neck-band or markedly constricted neck, the deposition of host wall-like material in the external matrix bounded by the invaginated host plasmalemma and in the association of callose reactions \vith intracellular hyphae and adjacent parts of host walls. -
Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
A First Phylogenetic Study on Stoloniferous Octocorals Off the Coast of Kota Kinabalu, Sabah, Malaysia, with the Description of Two New Genera and Five New Species
A peer-reviewed open-access journal ZooKeys 872: 127–158Phylogenetic (2019) study on stoloniferous octocorals off the coast of Kota Kinabalu 127 doi: 10.3897/zookeys.872.36288 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research A first phylogenetic study on stoloniferous octocorals off the coast of Kota Kinabalu, Sabah, Malaysia, with the description of two new genera and five new species Yee Wah Lau1, James D. Reimer1,2 1 Molecular Invertebrate Systematics and Ecology Laboratory, Graduate School of Engineering and Science, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan 2 Tropical Biosphere Research Center, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan Corresponding author: Lau YW ([email protected]) Academic editor: B.W. Hoeksema | Received 17 May 2019 | Accepted 12 July 2019 | Published 26 August 2019 http://zoobank.org/BDF92DBF-34CE-4600-939D-2573C7D4F0B4 Citation: Lau YW, Reimer JD (2019) A first phylogenetic study on stoloniferous octocorals off the coast of Kota Kinabalu, Sabah, Malaysia, with the description of two new genera and five new species. ZooKeys 872: 127–158. https://doi.org/10.3897/zookeys.872.36288 Abstract Sabah, Malaysia, is well known for its extensive and diverse coral reefs. It is located on the northwestern edge of the Coral Triangle, the region with the highest marine biodiversity. Much of the marine fauna here is still unknown, especially inconspicuous animals, such as small stoloniferous octocorals, which are common on coral reefs. Here, we describe two new monospecific genera of the family Arulidae found off the coast of Kota Kinabalu, Sabah, East Malaysia; Bunga payung gen. -
Streptomyces Cytochrome P450 Enzymes and Their Roles in the Biosynthesis of Macrolide Therapeutic Agents
Review Biomol Ther 27(2), 127-133 (2019) Streptomyces Cytochrome P450 Enzymes and Their Roles in the Biosynthesis of Macrolide Therapeutic Agents Myung-A Cho, Songhee Han, Young-Ran Lim, Vitchan Kim, Harim Kim and Donghak Kim,* Department of Biological Sciences, Konkuk University, Seoul 05025, Republic of Korea Abstract The study of the genus Streptomyces is of particular interest because it produces a wide array of clinically important bioactive molecules. The genomic sequencing of many Streptomyces species has revealed unusually large numbers of cytochrome P450 genes, which are involved in the biosynthesis of secondary metabolites. Many macrolide biosynthetic pathways are catalyzed by a series of enzymes in gene clusters including polyketide and non-ribosomal peptide synthesis. In general, Streptomyces P450 enzymes accelerate the final, post-polyketide synthesis steps to enhance the structural architecture of macrolide chemistry. In this review, we discuss the major Streptomyces P450 enzymes research focused on the biosynthetic processing of macrolide therapeutic agents, with an emphasis on their biochemical mechanisms and structural insights. Key Words: Streptomyces, P450, CYP, Biosynthesis, Macrolide, Secondary metabolite INTRODUCTION isms became important to human health with the discovery of penicillin in 1928 by Fleming, and the discovery of the anti- The phylum actinobacteria is one of the major lineages cur- tuberculosis agent streptomycin from Streptomyces griseus rently recognized within bacteria (Ventura et al., 2007). Acti- in 1944 by Waksman (Ikeda, 2017). More recently, the 2015 nobacteria are widely distributed in terrestrial, especially soil, Nobel prize in Physiology or Medicine was awarded to Omura and aquatic ecosystems (McCarthy and Williams, 1992; Stach and Campbell for their contributions to the discovery of the and Bull, 2005). -
Guide to the Identification of Precious and Semi-Precious Corals in Commercial Trade
'l'llA FFIC YvALE ,.._,..---...- guide to the identification of precious and semi-precious corals in commercial trade Ernest W.T. Cooper, Susan J. Torntore, Angela S.M. Leung, Tanya Shadbolt and Carolyn Dawe September 2011 © 2011 World Wildlife Fund and TRAFFIC. All rights reserved. ISBN 978-0-9693730-3-2 Reproduction and distribution for resale by any means photographic or mechanical, including photocopying, recording, taping or information storage and retrieval systems of any parts of this book, illustrations or texts is prohibited without prior written consent from World Wildlife Fund (WWF). Reproduction for CITES enforcement or educational and other non-commercial purposes by CITES Authorities and the CITES Secretariat is authorized without prior written permission, provided the source is fully acknowledged. Any reproduction, in full or in part, of this publication must credit WWF and TRAFFIC North America. The views of the authors expressed in this publication do not necessarily reflect those of the TRAFFIC network, WWF, or the International Union for Conservation of Nature (IUCN). The designation of geographical entities in this publication and the presentation of the material do not imply the expression of any opinion whatsoever on the part of WWF, TRAFFIC, or IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The TRAFFIC symbol copyright and Registered Trademark ownership are held by WWF. TRAFFIC is a joint program of WWF and IUCN. Suggested citation: Cooper, E.W.T., Torntore, S.J., Leung, A.S.M, Shadbolt, T. and Dawe, C. -
Deep-Sea Fauna of the European Seas: an Annotated Species Check-List Of
Invertebrate Zoology, 2014, 11(1): 134–155 © INVERTEBRATE ZOOLOGY, 2014 Deep-sea fauna of European seas: An annotated species check-list of benthic invertebrates living deeper than 2000 m in the seas bordering Europe. Gastropoda Alexander V. Sysoev Zoological Museum, Moscow State University, Bol’shaya Nikitskaya ul., 6, Moscow, 125009, Russia. E-mail: [email protected] ABSTRACT: An annotated check-list is given of Gastropoda species occurring deeper than 2000 m in the seas bordering Europe. The check-list is based on published data. The check- list includes 221 species. For each species data on localities in European seas and general species distribution are provided. Station data are presented separately in the present thematic issue. How to cite this article: Sysoev A.V. 2014. Deep-sea fauna of European seas: An annotated species check-list of benthic invertebrates living deeper than 2000 m in the seas bordering Europe. Gastropoda // Invert. Zool. Vol.11. No.1. P.134–155. KEY WORDS: deep-sea fauna, European seas, Gastropoda. Глубоководная фауна европейских морей: аннотированный список видов донных беспозвоночных, обитающих глубже 2000 м в морях, окружающих Европу. Gastropoda А.В. Сысоев Зоологический музей МГУ им. М.В. Ломоносова, ул. Большая Никитская, 6, Москва 125009, Россия. E-mail: [email protected] РЕЗЮМЕ: Приводится аннотированный список видов Gastropoda, обитающих глуб- же 2000 м в морях, окружающих Европу. Список основан на опубликованных данных. Список насчитывает 221 вид. Для каждого вида приведены данные о нахождениях в европейских морях и сведения о распространении. Данные о станци- ях приводятся в отдельном разделе настоящего тематического выпуска. Как цитировать эту статью: Sysoev A.V. -
Gr up Industrial Microbiology & Biotechnology
SMGr up Industrial Microbiology & Biotechnology Sandeep Tiwari1, Syed Babar Jamal1, Paulo Vinícius Sanches Daltro de Carvalho1, Syed Shah Hassan1, Artur Silva2 and Vasco Azevedo1 1Universidade Federal de Minas Gerais, UFMG, Brazil 2Universidade Federal do Pará, Belém, PA, Brazil. *Corresponding author: Vasco Azevedo, Universidade Federal de Minas Gerais/Instituto de CiênciasBiológicas, Minas Gerais, Brazil, Email: [email protected] Published Date: February 15, 2015 ABSTRACT Microbes are small living organisms, quite diverse and adapt to various environments. They live on our planet long before that markedly effects the human, animals and plants life. Biotechnologically, molecular genetics of microbes is systematically manipulated, enable them possible through transfer of human insulin gene to a bacterium to treat diabetes, a milestone in for the production of beneficial products. The large-scale production of insulin was made the history of biotechnology. The microbial cultures are managed, monitored and maintained for their genotype/phenotype stability. Bacteria are one of the biotechnologically important microbes for example Escherichia coli, some species of lactic acid bacteria, and some viruses Using such as bacteriophages etc. recognized as anti-cancer oncolytic viruses. Moreover, yeast has also been used with broad-spectrum applications, such as Saccharomyces cerevisiae. biologically active primary and secondary metabolites like ethanol and antibiotics have been diverse genetic technologies, a number of beneficial products like microbial polymers, produced so far and used. Here, it would be injustice not to comment on the importance of vaccines for several infectious diseases through their ability to trigger the host immune system. Furthermore, roles of microorganisms in the production of pharmaceutical proteins A Text Book of Biotechnology | www.smgebooks.com 1 Copyright Azevedo V. -
Improved Taxonomy of the Genus Streptomyces
UNIVERSITEIT GENT Faculteit Wetenschappen Vakgroep Biochemie, Fysiologie & Microbiologie Laboratorium voor Microbiologie Improved taxonomy of the genus Streptomyces Benjamin LANOOT Scriptie voorgelegd tot het behalen van de graad van Doctor in de Wetenschappen (Biochemie) Promotor: Prof. Dr. ir. J. Swings Co-promotor: Dr. M. Vancanneyt Academiejaar 2004-2005 FACULTY OF SCIENCES ____________________________________________________________ DEPARTMENT OF BIOCHEMISTRY, PHYSIOLOGY AND MICROBIOLOGY UNIVERSITEIT LABORATORY OF MICROBIOLOGY GENT IMPROVED TAXONOMY OF THE GENUS STREPTOMYCES DISSERTATION Submitted in fulfilment of the requirements for the degree of Doctor (Ph D) in Sciences, Biochemistry December 2004 Benjamin LANOOT Promotor: Prof. Dr. ir. J. SWINGS Co-promotor: Dr. M. VANCANNEYT 1: Aerial mycelium of a Streptomyces sp. © Michel Cavatta, Academy de Lyon, France 1 2 2: Streptomyces coelicolor colonies © John Innes Centre 3: Blue haloes surrounding Streptomyces coelicolor colonies are secreted 3 4 actinorhodin (an antibiotic) © John Innes Centre 4: Antibiotic droplet secreted by Streptomyces coelicolor © John Innes Centre PhD thesis, Faculty of Sciences, Ghent University, Ghent, Belgium. Publicly defended in Ghent, December 9th, 2004. Examination Commission PROF. DR. J. VAN BEEUMEN (ACTING CHAIRMAN) Faculty of Sciences, University of Ghent PROF. DR. IR. J. SWINGS (PROMOTOR) Faculty of Sciences, University of Ghent DR. M. VANCANNEYT (CO-PROMOTOR) Faculty of Sciences, University of Ghent PROF. DR. M. GOODFELLOW Department of Agricultural & Environmental Science University of Newcastle, UK PROF. Z. LIU Institute of Microbiology Chinese Academy of Sciences, Beijing, P.R. China DR. D. LABEDA United States Department of Agriculture National Center for Agricultural Utilization Research Peoria, IL, USA PROF. DR. R.M. KROPPENSTEDT Deutsche Sammlung von Mikroorganismen & Zellkulturen (DSMZ) Braunschweig, Germany DR. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Comparison of Coleoptera Emergent from Various Decay Classes of Downed Coarse Woody Debris in Great Smoky Mountains National Park, USA
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Center for Systematic Entomology, Gainesville, Insecta Mundi Florida 11-30-2012 Comparison of Coleoptera emergent from various decay classes of downed coarse woody debris in Great Smoky Mountains National Park, USA Michael L. Ferro Louisiana State Arthropod Museum, [email protected] Matthew L. Gimmel Louisiana State University AgCenter, [email protected] Kyle E. Harms Louisiana State University, [email protected] Christopher E. Carlton Louisiana State University Agricultural Center, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/insectamundi Ferro, Michael L.; Gimmel, Matthew L.; Harms, Kyle E.; and Carlton, Christopher E., "Comparison of Coleoptera emergent from various decay classes of downed coarse woody debris in Great Smoky Mountains National Park, USA" (2012). Insecta Mundi. 773. https://digitalcommons.unl.edu/insectamundi/773 This Article is brought to you for free and open access by the Center for Systematic Entomology, Gainesville, Florida at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Insecta Mundi by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. INSECTA A Journal of World Insect Systematics MUNDI 0260 Comparison of Coleoptera emergent from various decay classes of downed coarse woody debris in Great Smoky Mountains Na- tional Park, USA Michael L. Ferro Louisiana State Arthropod Museum, Department of Entomology Louisiana State University Agricultural Center 402 Life Sciences Building Baton Rouge, LA, 70803, U.S.A. [email protected] Matthew L. Gimmel Division of Entomology Department of Ecology & Evolutionary Biology University of Kansas 1501 Crestline Drive, Suite 140 Lawrence, KS, 66045, U.S.A. -
Container List
Special Collections of the National Agricultural Library: Agricultural Research Service Biological Control Documentation Center Collection Series I. Asian Parasite Laboratory. Subseries I.A. Correspondence. Container List Series I. Asian Parasite Laboratory (APL). 1927-1993. 20 boxes. Series I.A. Correspondence. 1963-1993. 16.5 boxes. Box 1 Folder 1 Abrahamson, Lawrence P. 1983-1984 Box 1 Folder 2 Abstract n.d. Box 1 Folder 3 Academic Press, Inc. 1986-1993 Box 1 Folder 4 Achterberg, Dr. Kees van 1982 Box 1 Folder 5 Aeschlimann, Dr. Jean-Paul 1981-1985 Box 1 Folder 6 Agricultural Counselor 1976-1981 Box 1 Folder 7 Air Force, Army 1980-1981 Box 1 Folder 8 Aizawa, Professor Keio 1986 Box 1 Folder 9 Akasaka, Naoyuki 1982 Box 1 Folder 10 Allen, Professor Douglas C. 1981 Box 1 Folder 11 Allen Press, Inc. 1992-1993 Box 1 Folder 12 American Embassy, Beijing, China 1990-1991 Box 1 Folder 13 American Embassy, Tokyo, Japan 1981-1990 Box 1 Folder 14 American Journal of Botany 1992 Box 1 Folder 15 Amman, Dr. Gene D. 1982 Box 1 Folder 16 Amrine, Jr., Dr. James W. 1986 Box 1 Folder 17 Anderson, Don M. 1981-1983 Box 1 Folder 18 Anderson, John F. 1975-1976 Box 1 Folder 19 Andres, Dr. Lloyd 1989-1990 Box 1 Folder 20 Angalet, Dr. George W. 1973-1978 Box 1 Folder 21 Annual Reviews Inc. 1992 Box 1 Folder 22 Ao, Professor Hsien-Bine 1988 Box 1 Folder 23 Aoki, Professor Joji 1977-1978 Box 1 Folder 24 Apps, Dr. Darrel A. 1984 Box 1 Folder 25 Agricultural Research 1980-1981 Box 1 Folder 26 Army, Thomas J.