Basic Virology
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Plant Viruses
Western Plant Diagnostic Network1 First Detector News A Quarterly Pest Update for WPDN First Detectors Spring 2015 edition, volume 8, number 2 In this Issue Page 1: Editor’s Note Dear First Detectors, Pages 2 – 3: Intro to Plant Plant viruses cause many important plant diseases and are Viruses responsible for huge losses in crop production and quality in Page 4: Virus nomenclature all parts of the world. Plant viruses can spread very quickly because many are vectored by insects such as aphids and Page 5 – Most Serious World Plant Viruses & Symptoms whitefly. They are a major pest of crop production as well as major pests of home gardens. By mid-summer many fields, Pages 6 – 7: Plant Virus vineyards, orchards, and gardens will see the effects of plant Vectors viruses. The focus of this edition is the origin, discovery, taxonomy, vectors, and the effects of virus infection in Pages 7 - 10: Grapevine plants. There is also a feature article on grapevine viruses. Viruses And, as usual, there are some pest updates from the West. Page 10: Pest Alerts On June 16 – 18, the WPDN is sponsoring the second Invasive Snail and Slug workshop at UC Davis. The workshop Contact us at the WPDN Regional will be recorded and will be posted on the WPDN and NPDN Center at UC Davis: home pages. Have a great summer and here’s hoping for Phone: 530 754 2255 rain! Email: [email protected] Web: https://wpdn.org Please find the NPDN family of newsletters at: Editor: Richard W. Hoenisch @Copyright Regents of the Newsletters University of California All Rights Reserved Western Plant Diagnostic Network News Plant Viruses 2 Ag, Manitoba Photo courtesy Photo Food, and Rural Initiatives and Food, of APS Photo by Giovanni Martelli, U of byBari Giovanni Photo Grapevine Fanleaf Virus Peanut leaf with Squash Mosaic Virus tomato spotted wilt virus Viruses are infectious pathogens that are too small to be seen with a light microscope, but despite their small size they can cause chaos. -
An Introduction to the Viruses
Chapter 1 An introduction to the viruses Viruses are obligate intracellular parasites of man, other animals, plants and bacteria. They can only multiply within cells, and thus differ from bacteria, which can multiply in tissues in an extracellular position, and also in artificial culture media in the laboratory. It has always been recognized that viruses are distinct from the bacteria, but originally other groups of infective agents were included among the viruses which are now known to be organisms of a different and more complex nature. These included the Chlamydiae, organisms causing diseases such as lymphogranuloma venereum and trachoma, and the Rickettsiae, the causative agents of typhus and related infections. The specific treatment of infections caused by these two groups of agents will not be considered in this work, which is restricted to the chemotherapy of infections caused by the true viruses. The Chlamydiae and Rickettsiae are complete organisms, with cell walls, which possess both types of nucleic acid, enzyme systems which function within their cytoplasm, and a number of cell organelles. The viruses, on the other hand, possess either DNA or RNA as their genetic material, but not both. In some cases they contain enzymes, but these exert their functions within the host cell after the virus particle has under gone a process of dissolution during the early stage of infection. Except in the case of the arenaviruses, a group which contains the virus of Lassa fever, the virus particles do not contain organelles. A virus is thus much more rudimentary in structure, and relies upon the host cell to provide the systems for synthesizing its components which it does not possess itself. -
Virus Goes Viral: an Educational Kit for Virology Classes
Souza et al. Virology Journal (2020) 17:13 https://doi.org/10.1186/s12985-020-1291-9 RESEARCH Open Access Virus goes viral: an educational kit for virology classes Gabriel Augusto Pires de Souza1†, Victória Fulgêncio Queiroz1†, Maurício Teixeira Lima1†, Erik Vinicius de Sousa Reis1, Luiz Felipe Leomil Coelho2 and Jônatas Santos Abrahão1* Abstract Background: Viruses are the most numerous entities on Earth and have also been central to many episodes in the history of humankind. As the study of viruses progresses further and further, there are several limitations in transferring this knowledge to undergraduate and high school students. This deficiency is due to the difficulty in designing hands-on lessons that allow students to better absorb content, given limited financial resources and facilities, as well as the difficulty of exploiting viral particles, due to their small dimensions. The development of tools for teaching virology is important to encourage educators to expand on the covered topics and connect them to recent findings. Discoveries, such as giant DNA viruses, have provided an opportunity to explore aspects of viral particles in ways never seen before. Coupling these novel findings with techniques already explored by classical virology, including visualization of cytopathic effects on permissive cells, may represent a new way for teaching virology. This work aimed to develop a slide microscope kit that explores giant virus particles and some aspects of animal virus interaction with cell lines, with the goal of providing an innovative approach to virology teaching. Methods: Slides were produced by staining, with crystal violet, purified giant viruses and BSC-40 and Vero cells infected with viruses of the genera Orthopoxvirus, Flavivirus, and Alphavirus. -
Theory of an Immune System Retrovirus
Proc. Nati. Acad. Sci. USA Vol. 83, pp. 9159-9163, December 1986 Medical Sciences Theory of an immune system retrovirus (human immunodeficiency virus/acquired immune deficiency syndrome) LEON N COOPER Physics Department and Center for Neural Science, Brown University, Providence, RI 02912 Contributed by Leon N Cooper, July 23, 1986 ABSTRACT Human immunodeficiency virus (HIV; for- initiates clonal expansion, sustained by interleukin 2 and y merly known as human T-cell lymphotropic virus type interferon. Ill/lymphadenopathy-associated virus, HTLV-Ill/LAV), the I first give a brief sketch of these events in a linked- retrovirus that infects T4-positive (helper) T cells of the interaction model in which it is assumed that antigen-specific immune system, has been implicated as the agent responsible T cells must interact with the B-cell-processed virus to for the acquired immune deficiency syndrome. In this paper, initiate clonal expansion (2). I then assume that virus-specific I contrast the growth of a "normal" virus with what I call an antibody is the major component ofimmune system response immune system retrovirus: a retrovirus that attacks the T4- that limits virus spread. As will be seen, the details of these positive T cells of the immune system. I show that remarkable assumptions do not affect the qualitative features of my interactions with other infections as well as strong virus conclusions. concentration dependence are general properties of immune Linked-Interaction Model for Clonal Expansion of Lympho- system retroviruses. Some of the consequences of these ideas cytes. Let X be the concentration of normal infecting virus are compared with observations. -
Lecture 7 Introduction to Viruses Introduction
Lecture 7 Introduction to Viruses Introduction Virus, parasite with a noncellular structure composed mainly of nucleic acid within a protein coat. Most viruses are too small (100–2,000 Angstrom units) to be seen with the light microscope and thus must be studied by electron microscopes. In one stage of their life cycle, in which they are free and infectious, virus particles do not carry out the functions of living cells, such as respiration and growth; in the other stage, however, viruses enter living plant, animal, or bacterial cells and make use of the host cell's chemical energy and its protein- and nucleic acid–synthesizing ability to replicate themselves. Over 5,000 species of viruses have been discovered. Discovery of Viruses In 1884 the French microbiologist Charles Chamberland invented a filter, known today as the Chamberland filter or Chamberland–Pasteur filter that has pores smaller than bacteria. Thus he could pass a solution containing bacteria through the filter and completely remove them from the solution. In the early 1890s the Russian biologist Dmitri Ivanovsky used this filter to study what became known as the tobacco mosaic virus. His experiments showed that extracts from the crushed leaves of infected tobacco plants remain infectious after filtration. At the same time several other scientists proved that, although these agents (later called viruses) were different from bacteria, they could still cause disease, and they were about one hundredth the size of bacteria. In 1899 the Dutch microbiologist Martinus Beijerinck observed that the agent multiplied only in dividing cells. Having failed to demonstrate its particulate nature he called it a "contagium vivum fluidum", a "soluble living germ". -
West Nile Virus (WNV) Fact Sheet
West Nile Virus (WNV) Fact Sheet What Is West Nile Virus? How Does West Nile Virus Spread? West Nile virus infection can cause serious disease. WNV is ▪ Infected Mosquitoes. established as a seasonal epidemic in North America that WNV is spread by the bite of an infected mosquito. flares up in the summer and continues into the fall. This Mosquitoes become infected when they feed on fact sheet contains important information that can help infected birds. Infected mosquitoes can then spread you recognize and prevent West Nile virus. WNV to humans and other animals when they bite. What Can I Do to Prevent WNV? ▪ Transfusions, Transplants, and Mother-to-Child. In a very small number of cases, WNV also has been The easiest and best way to avoid WNV is to prevent spread directly from an infected person through blood mosquito bites. transfusions, organ transplants, breastfeeding and ▪ When outdoors, use repellents containing DEET, during pregnancy from mother to baby. picaridin, IR3535, some oil of lemon eucalyptus or para- Not through touching. menthane-diol. Follow the directions on the package. ▪ WNV is not spread through casual contact such as ▪ Many mosquitoes are most active from dusk to dawn. touching or kissing a person with the virus. Be sure to use insect repellent and wear long sleeves and pants at these times or consider staying indoors How Soon Do Infected People Get Sick? during these hours. People typically develop symptoms between 3 and 14 days after they are bitten by the infected mosquito. ▪ Make sure you have good screens on your windows and doors to keep mosquitoes out. -
Constructing Protocells: a Second Origin of Life
04_SteenRASMUSSEN.qxd:Maqueta.qxd 4/6/12 11:45 Página 585 Session I: The Physical Mind CONSTRUCTING PROTOCELLS: A SECOND ORIGIN OF LIFE STEEN RASMUSSEN Center for Fundamental Living Technology (FLinT) Santa Fe Institute, New Mexico USA ANDERS ALBERTSEN, PERNILLE LYKKE PEDERSEN, CARSTEN SVANEBORG Center for Fundamental Living Technology (FLinT) ABSTRACT: What is life? How does nonliving materials become alive? How did the first living cells emerge on Earth? How can artificial living processes be useful for technology? These are the kinds of questions we seek to address by assembling minimal living systems from scratch. INTRODUCTION To create living materials from nonliving materials, we first need to understand what life is. Today life is believed to be a physical process, where the properties of life emerge from the dynamics of material interactions. This has not always been the assumption, as living matter at least since the origin of Hindu medicine some 5000 years ago, was believed to have a metaphysical vital force. Von Neumann, the inventor of the modern computer, realized that if life is a physical process it should be possible to implement life in other media than biochemistry. In the 1950s, he was one of the first to propose the possibilities of implementing living processes in computers and robots. This perspective, while being controversial, is gaining momentum in many scientific communities. There is not a generally agreed upon definition of life within the scientific community, as there is a grey zone of interesting processes between nonliving and living matter. Our work on assembling minimal physicochemical life is based on three criteria, which most biological life forms satisfy. -
View Policy Viral Infectivity
Virology Journal BioMed Central Editorial Open Access Virology on the Internet: the time is right for a new journal Robert F Garry* Address: Department of Microbiology and Immunology Tulane University School of Medicine New Orleans, Louisiana USA Email: Robert F Garry* - [email protected] * Corresponding author Published: 26 August 2004 Received: 31 July 2004 Accepted: 26 August 2004 Virology Journal 2004, 1:1 doi:10.1186/1743-422X-1-1 This article is available from: http://www.virologyj.com/content/1/1/1 © 2004 Garry; licensee BioMed Central Ltd. This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Virology Journal is an exclusively on-line, Open Access journal devoted to the presentation of high- quality original research concerning human, animal, plant, insect bacterial, and fungal viruses. Virology Journal will establish a strategic alternative to the traditional virology communication process. The outbreaks of SARS coronavirus and West Nile virus Open Access (WNV), and the troubling increase of poliovirus infec- Virology Journal's Open Access policy changes the way in tions in Africa, are but a few recent examples of the unpre- which articles in virology can be published [1]. First, all dictable and ever-changing topography of the field of articles are freely and universally accessible online as soon virology. Previously unknown viruses, such as the SARS as they are published, so an author's work can be read by coronavirus, may emerge at anytime, anywhere in the anyone at no cost. -
Viral Gene Therapy Lecture 25 Biology 3310/4310 Virology Spring 2017
Viral gene therapy Lecture 25 Biology 3310/4310 Virology Spring 2017 “Trust science, not scientists” --DICKSON DESPOMMIER Virus vectors • Gene therapy: deliver a gene to patients who lack the gene or carry defective versions • To deliver antigens (viral vaccines) • Viral oncotherapy • Research uses Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University A Poliovirus C (+) mRNA I AnAOH3’ Infection Cultured cells (+) Viral RNA Vaccinia virus T7 Viral DNA 5' Transfection 3' encoding T7 Plasmids expressing N, P, L, RNA polymerase and (+) strand RNA cDNA synthesis and cloning Infection Transfection Transfection Transfection Poliovirus 5' Progeny DNA 3' In vitro RNA (+) strand RNA synthesis transcript Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University ©Principles of Virology, ASM Press B Viral protein PB1 Infectious virus Translation D (+) mRNA c AnAOH3’ (+) mRNA I AnAOH3’ RNA polymerase II (splicing) Plasmid Plasmid Pol II Viral DNA Pol I T7 Viral DNA RNA polymerase I (–) vRNAs 8-plasmid 10-plasmid transfection transfection Infectious virus Infectious virus ScEYEnce Studios Principles of Virology, 4e Volume 01 Fig. 03.12 10-28-14 Adenovirus vectors Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University ©Principles of Virology, ASM Press Adenovirus vectors • Efficiently infect post-mitotic cells • Fast (48 h) onset of gene expression • Episomal, minimal risk of insertion mutagenesis • Up to 37 kb capacity • Pure, concentrated preps routine • >50 human serotypes, animal serotypes • Drawback: immunity Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University Adenovirus vectors • First generation vectors: E1, E3 deleted • E1: encodes T antigens (Rb, p53) • E3: not essential, immunomodulatory proteins Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University http://edoc.ub.uni-muenchen.de/13826/ Adenovirus vectors • Second generation vectors: E1, E3 deleted, plus deletions in E2 or E4 • More space for transgene Virology Lectures 2017 • Prof. -
Historical Overview 1
Historical Overview 1 Contents 1.1 Since When Have We Known of Viruses? ................................................ 3 1.2 What Technical Advances Have Contributed to the Development of Modern Virology? .......................................................................... 4 1.2.1 Animal Experiments Have Provided Important Insights into the Pathogenesis of Viral Diseases .................................................... 5 1.2.2 Cell Culture Systems Are an Indispensable Basis for Virus Research ........... 6 1.2.3 Modern Molecular Biology Is also a Child of Virus Research ................... 8 1.3 What Is the Importance of the Henle–Koch Postulates? .................................. 9 1.4 What Is the Interrelationship Between Virus Research, Cancer Research, Neurobiology and Immunology? .......................................................... 10 1.4.1 Viruses are Able to Transform Cells and Cause Cancer .......................... 10 1.4.2 Central Nervous System Disorders Emerge as Late Sequelae of Slow Viral Infections ........................................................................... 12 1.4.3 Interferons Stimulate the Immune Defence Against Viral Infections . .. .. .. .. 12 1.5 What Strategies Underlie the Development of Antiviral Chemotherapeutic Agents? . 13 1.6 What Challenges Must Modern Virology Face in the Future? .. ... ... ... ... ... ... ... ... 13 Further Reading ................................................................................... 14 1.1 Since When Have We Known of Viruses? “Poisons” were -
Archives of Virology
Archives of Virology Binomial nomenclature for virus species: a long view --Manuscript Draft-- Manuscript Number: ARVI-D-20-00436R2 Full Title: Binomial nomenclature for virus species: a long view Article Type: Virology Division News: Virus Taxonomy/Nomenclature Keywords: virus taxonomy; species definition; virus definition; virions; metagenomes; Latinized binomials Corresponding Author: Adrian John Gibbs, Ph.D. ex-Australian National University Canberra, ACT AUSTRALIA Corresponding Author Secondary Information: Corresponding Author's Institution: ex-Australian National University Corresponding Author's Secondary Institution: First Author: Adrian John Gibbs, Ph.D. First Author Secondary Information: Order of Authors: Adrian John Gibbs, Ph.D. Order of Authors Secondary Information: Funding Information: Abstract: On several occasions over the past century it has been proposed that Latinized (Linnaean) binomial names (LBs) should be used for the formal names of virus species, and the opinions expressed in the early debates are still valid. The use of LBs would be sensible for the current Taxonomy if confined to the names of the specific and generic taxa of viruses of which some basic biological properties are known (e.g. ecology, hosts and virions); there is no advantage filling the literature with formal names for partly described viruses or virus-like gene sequences. The ICTV should support the time-honoured convention that LBs are only used with biological (phylogenetic) classifications. Recent changes have left the ICTV Taxonomy and -
Viral Infection Modulates Mitochondrial Function
International Journal of Molecular Sciences Review Viral Infection Modulates Mitochondrial Function Xiaowen Li 1,2,3, Keke Wu 1,2,3, Sen Zeng 1,2,3, Feifan Zhao 1,2,3, Jindai Fan 1,2,3, Zhaoyao Li 1,2,3, Lin Yi 1,2,3, Hongxing Ding 1,2,3, Mingqiu Zhao 1,2,3, Shuangqi Fan 1,2,3,* and Jinding Chen 1,2,3,* 1 College of Veterinary Medicine, South China Agricultural University, No. 483 Wushan Road, Tianhe District, Guangzhou 510642, China; [email protected] (X.L.); [email protected] (K.W.); [email protected] (S.Z.); [email protected] (F.Z.); [email protected] (J.F.); [email protected] (Z.L.); [email protected] (L.Y.); [email protected] (H.D.); [email protected] (M.Z.) 2 Guangdong Laboratory for Lingnan Modern Agriculture, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China 3 Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, Guangzhou 510642, China * Correspondence: [email protected] (S.F.); [email protected] (J.C.); Tel.: +86-20-8528-8017 (S.F.); +86-20-8528-8017 (J.C.) Abstract: Mitochondria are important organelles involved in metabolism and programmed cell death in eukaryotic cells. In addition, mitochondria are also closely related to the innate immunity of host cells against viruses. The abnormality of mitochondrial morphology and function might lead to a variety of diseases. A large number of studies have found that a variety of viral infec- tions could change mitochondrial dynamics, mediate mitochondria-induced cell death, and alter the mitochondrial metabolic status and cellular innate immune response to maintain intracellular survival.