Smad3-Dependent Activation of Gli2 and Gli1 Expression in Vitro and in Vivo
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Hedgehog Signaling Is Evolutionarily Conserved Cilium-Independent
Downloaded from genesdev.cshlp.org on August 14, 2009 - Published by Cold Spring Harbor Laboratory Press Cilium-independent regulation of Gli protein function by Sufu in Hedgehog signaling is evolutionarily conserved Miao-Hsueh Chen, Christopher W. Wilson, Ya-Jun Li, et al. Genes Dev. 2009 23: 1910-1928 Access the most recent version at doi:10.1101/gad.1794109 Supplemental http://genesdev.cshlp.org/content/suppl/2009/07/23/23.16.1910.DC1.html Material References This article cites 97 articles, 47 of which can be accessed free at: http://genesdev.cshlp.org/content/23/16/1910.full.html#ref-list-1 Email alerting Receive free email alerts when new articles cite this article - sign up in the box at the service top right corner of the article or click here To subscribe to Genes & Development go to: http://genesdev.cshlp.org/subscriptions Copyright © 2009 by Cold Spring Harbor Laboratory Press Downloaded from genesdev.cshlp.org on August 14, 2009 - Published by Cold Spring Harbor Laboratory Press Cilium-independent regulation of Gli protein function by Sufu in Hedgehog signaling is evolutionarily conserved Miao-Hsueh Chen,1,3 Christopher W. Wilson,1,3 Ya-Jun Li,1 Kelvin King Lo Law,2 Chi-Sheng Lu,1 Rhodora Gacayan,1 Xiaoyun Zhang,2 Chi-chung Hui,2 and Pao-Tien Chuang1,4 1Cardiovascular Research Institute, University of California at San Francisco, San Francisco, California 94158, USA; 2Program in Developmental and Stem Cell Biology, The Hospital for Sick Children, and Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5G 1L7, Canada A central question in Hedgehog (Hh) signaling is how evolutionarily conserved components of the pathway might use the primary cilium in mammals but not fly. -
GLI1-Amplifications Expand the Spectrum of Soft Tissue Neoplasms Defined by GLI1 Gene Fusions
Modern Pathology (2019) 32:1617–1626 https://doi.org/10.1038/s41379-019-0293-x ARTICLE GLI1-amplifications expand the spectrum of soft tissue neoplasms defined by GLI1 gene fusions 1 1 1 2 3 Narasimhan P. Agaram ● Lei Zhang ● Yun-Shao Sung ● Samuel Singer ● Todd Stevens ● 3 4 5 6 6 Carlos N. Prieto-Granada ● Justin A. Bishop ● Benjamin A. Wood ● David Swanson ● Brendan C. Dickson ● Cristina R. Antonescu1 Received: 18 February 2019 / Revised: 29 April 2019 / Accepted: 1 May 2019 / Published online: 12 June 2019 © United States & Canadian Academy of Pathology 2019 Abstract GLI1 fusions involving ACTB, MALAT1, and PTCH1 genes have been recently reported in a subset of malignant soft tissue tumors with characteristic monomorphic nested epithelioid morphology and frequent S100 positivity. However, we encountered a group of morphologically similar soft tissue tumors lacking the canonical GLI1 gene fusions and sought to investigate their genetic abnormalities. A combined approach including RNA sequencing, targeted exome sequencing and FISH methodologies were used to identify potential novel genetic abnormalities. Ten patients (five females, five males) with – fi 1234567890();,: 1234567890();,: an age range of 4 65 years (median 32.5) were identi ed. Tumors were located in the soft tissues of the limbs, trunk and head and neck, with one each in the tongue and lung. Histologically, tumors revealed ovoid to epithelioid cells arranged in a distinctive nested-trabecular pattern, separated by thin septa and a delicate vascular network. Two cases showed areas of increased nuclear pleomorphism and focal fascicular spindle cell growth. Four tumors showed a high mitotic count (≥15/10 HPFs), with necrosis seen in three of them. -
Gli Transcription Factors Mediate the Oncogenic Transformation of Prostate Basal Cells Induced by a Kras-Androgen Receptor Axis*
crossmark THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 291, NO. 49, pp. 25749–25760, December 2, 2016 © 2016 by The American Society for Biochemistry and Molecular Biology, Inc. Published in the U.S.A. Gli Transcription Factors Mediate the Oncogenic Transformation of Prostate Basal Cells Induced by a Kras-Androgen Receptor Axis*□S Received for publication, August 12, 2016, and in revised form, September 28, 2016 Published, JBC Papers in Press, October 19, 2016, DOI 10.1074/jbc.M116.753129 Meng Wu‡, Lishann Ingram‡, Ezequiel J. Tolosa§, Renzo E. Vera§, Qianjin Li‡, Sungjin Kim‡, Yongjie Ma‡, Demetri D. Spyropoulos¶, Zanna Beharryʈ, Jiaoti Huang**, Martin E. Fernandez-Zapico§, and Houjian Cai‡1 From the ‡Department of Pharmaceutical and Biomedical Sciences, College of Pharmacy, University of Georgia, Athens, Georgia 30602, the §Schulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota 55905, the ¶Department of Pathology and Laboratory Medicine, Medical University of South Carolina, Charleston, South Carolina 29425, the ʈDepartment of Chemistry and Physics, Florida Gulf Coast University, Fort Myers, Florida 33965, and the **Department of Pathology, School of Medicine, Duke University, Durham, North Carolina 27710 Edited by Eric Fearon Although the differentiation of oncogenically transformed cer progression has been characterized with multiple stages, 2 basal progenitor cells is one of the key steps in prostate tumori- including benign, prostatic intraepithelial neoplasia (PIN), Downloaded from genesis, the mechanisms mediating this cellular process are still invasive adenocarcinoma, and metastatic cancer (2). Numerous ؉ largely unknown. Here we demonstrate that an expanded p63 oncogenic driver genes, including loss of tumor suppressors, ؉ and CK5 basal/progenitor cell population, induced by the con- overexpression, and/or activation of oncogenes, have been comitant activation of oncogenic Kras(G12D) and androgen identified based on genetic analysis of clinical prostate tumors. -
Role of Sonic Hedgehog Signaling Pathway in Neuroblastoma Development
Review Article Biology and Medicine, 1 (4): Rev2, 2009 eISSN: 09748369, www.biolmedonline.com Role of Sonic hedgehog signaling pathway in neuroblastoma development Mehdi Hayat Shahi1,2,3,§, Subrata Sinha2, *Mohammad Afzal3, *Javier S Castresana1 1Unidad de Biologia de Tumoures Cerebrales, Universidad de Navarra, 31008 Pamplona, Spain. 2Department of Biochemistry, All India Institute of Medical Sciences (AIIMS), New Delhi-110029, India. 3Section of Genetics, Department of Zoology, Aligarh Muslim University, Aligarh-202002, India. §Present address: Department of Genetics and Pathology, Rudbeck Laboratory, University of Uppsala, Uppsala- 75185, Sweden. *Corresponding Authors: Javier S Castresana, [email protected] Mohammad Afzal, [email protected] Abstract Malignant transformation of normal cells is a complex and accumulative process. Understanding this event gives insight into mechanisms of developmental biology and physical interaction of cellular machinery with surrounding ambient factors. However, the trend of embryonic malignancy is not interactive with ambient factors, rather a cause of deregulations of internal developmental process. In this review, we have attempted to explore the possibility of Sonic hedgehog role (Shh) in the development of neuroblastoma tumour. It is the major extra cranial tumour and develops in very early stage of childhood. Sonic hedgehog signaling is very well studied in another major childhood tumour i.e. medulloblastoma that contributes 20-25% of childhood tumours, and one-fourth of medulloblastoma is due to abnormality in the Shh signaling pathway. Therefore, we would consider whether Shh could also contribute to the development of neuroblastoma. Although scientists are coming up with the role of Shh in the neuroblastoma, the Sonic hedgehog signaling is very much one of the promising pathways because of its multi-dimensional role not only in CNS development but also in organogenesis and other major tumour development. -
The Title of the Dissertation
UNIVERSITY OF CALIFORNIA SAN DIEGO Novel network-based integrated analyses of multi-omics data reveal new insights into CD8+ T cell differentiation and mouse embryogenesis A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Bioinformatics and Systems Biology by Kai Zhang Committee in charge: Professor Wei Wang, Chair Professor Pavel Arkadjevich Pevzner, Co-Chair Professor Vineet Bafna Professor Cornelis Murre Professor Bing Ren 2018 Copyright Kai Zhang, 2018 All rights reserved. The dissertation of Kai Zhang is approved, and it is accept- able in quality and form for publication on microfilm and electronically: Co-Chair Chair University of California San Diego 2018 iii EPIGRAPH The only true wisdom is in knowing you know nothing. —Socrates iv TABLE OF CONTENTS Signature Page ....................................... iii Epigraph ........................................... iv Table of Contents ...................................... v List of Figures ........................................ viii List of Tables ........................................ ix Acknowledgements ..................................... x Vita ............................................. xi Abstract of the Dissertation ................................. xii Chapter 1 General introduction ............................ 1 1.1 The applications of graph theory in bioinformatics ......... 1 1.2 Leveraging graphs to conduct integrated analyses .......... 4 1.3 References .............................. 6 Chapter 2 Systematic -
Sonic Hedgehog Signaling Limits Atopic Dermatitis Via Gli2-Driven Immune Regulation
Sonic Hedgehog signaling limits atopic dermatitis via Gli2-driven immune regulation Eleftheria Papaioannou, … , Ryan F. L. O’Shaughnessy, Tessa Crompton J Clin Invest. 2019. https://doi.org/10.1172/JCI125170. Research Article Immunology Inflammation Hedgehog (Hh) proteins regulate development and tissue homeostasis, but their role in atopic dermatitis (AD) remains unknown. We found that on induction of mouse AD, Sonic Hedgehog (Shh) expression in skin, and Hh pathway action in skin T cells were increased. Shh signaling reduced AD pathology and the levels of Shh expression determined disease severity. Hh-mediated transcription in skin T cells in AD-induced mice increased Treg populations and their suppressive function through increased active transforming growth factor–b (TGF-b) in Tregs signaling to skin T effector populations to reduce disease progression and pathology. RNA sequencing of skin CD4+ T cells from AD-induced mice demonstrated that Hh signaling increased expression of immunoregulatory genes and reduced expression of inflammatory and chemokine genes. Addition of recombinant Shh to cultures of naive human CD4+ T cells in iTreg culture conditions increased FOXP3 expression. Our findings establish an important role for Shh upregulation in preventing AD, by increased Gli-driven Treg cell–mediated immune suppression, paving the way for a potential new therapeutic strategy. Find the latest version: http://jci.me/125170/pdf The Journal of Clinical Investigation RESEARCH ARTICLE Sonic Hedgehog signaling limits atopic dermatitis via Gli2-driven immune regulation Eleftheria Papaioannou,1 Diana C. Yánez,1,2 Susan Ross,1 Ching-In Lau,1 Anisha Solanki,1 Mira Manilal Chawda,1 Alex Virasami,1 Ismael Ranz,3 Masahiro Ono,1,4 Ryan F. -
Non-Canonical Activation of Hedgehog in Prostate Cancer Cells Mediated by the Interaction of Transcriptionally Active Androgen Receptor Proteins with Gli3
Oncogene (2018) 37:2313–2325 https://doi.org/10.1038/s41388-017-0098-7 ARTICLE Non-canonical activation of hedgehog in prostate cancer cells mediated by the interaction of transcriptionally active androgen receptor proteins with Gli3 1 1,2 2 1 1 1 2,3 Na Li ● Sarah Truong ● Mannan Nouri ● Jackson Moore ● Nader Al Nakouzi ● Amy Anne Lubik ● Ralph Buttyan Received: 19 July 2017 / Revised: 18 October 2017 / Accepted: 29 November 2017 / Published online: 12 February 2018 © The Author(s) 2018. This article is published with open access Abstract Hedgehog (Hh) is an oncogenic signaling pathway that regulates the activity of Gli transcription factors. Canonical Hh is a Smoothened-(Smo-) driven process that alters the post-translational processing of Gli2/Gli3 proteins. Though evidence supports a role for Gli action in prostate cancer (PCa) cell growth and progression, there is little indication that Smo is involved. Here we describe a non-canonical means for activation of Gli transcription in PCa cells mediated by the binding of transcriptionally-active androgen receptors (ARs) to Gli3. Androgens stimulated reporter expression from a Gli-dependent promoter in a variety of AR + PCa cells and this activity was suppressed by an anti-androgen, Enz, or by AR knockdown. 1234567890();,: Androgens also upregulated expression of endogenous Gli-dependent genes. This activity was associated with increased intranuclear binding of Gli3 to AR that was antagonized by Enz. Fine mapping of the AR binding domain on Gli2 showed that AR recognizes the Gli protein processing domain (PPD) in the C-terminus. Mutations in the arginine-/serine repeat elements of the Gli2 PPD involved in phosphorylation and ubiquitinylation blocked the binding to AR. -
Analysis of Cubitus Interruptus Regulation in Drosophila Embryos and Imaginal Disks
Development 121, 1625-1635 (1995) 1625 Printed in Great Britain © The Company of Biologists Limited 1995 Analysis of cubitus interruptus regulation in Drosophila embryos and imaginal disks Carol Schwartz1, John Locke2, Craig Nishida1 and Thomas B. Kornberg1 1Department of Biochemistry and Biophysics, University of California, San Francisco, California 94143, USA 2Department of Biological Sciences, University of Alberta, Alberta, Canada SUMMARY The cubitus interruptus (ci) gene of Drosophila is expressed expression. Evidence that the engrailed protein normally in all anterior compartment cells in both embryos and represses ci in posterior compartments includes the imaginal disks where it encodes a putative zinc-finger expansion of ci expression into posterior compartment cells protein related to the vertebrate Gli and C. elegans Tra-1 that lack engrailed function, diminution of ci expression proteins. Using ci/lacZ fusions, we located regulatory upon overexpression of engrailed protein in anterior com- sequences responsible for the normal pattern of ci partment cells, and the ability of engrailed protein to bind expression, and obtained evidence that separate elements to the ci regulatory region in vivo and in vitro. We suggest regulate its expression in embryos and imaginal disks. that engrailed protein directly represses ci expression in Mutants that delete a portion of this regulatory region posterior compartment cells. express ci ectopically in the posterior compartments of their wing imaginal disks and have wings with malformed posterior compartments. Similar deletions of ci/lacZ fusion Key words: Drosophila, developmental regulation, compartments, constructs also result in ectopic posterior compartment engrailed, cubitus interruptus, imaginal disk, segment polarity gene INTRODUCTION have been isolated; these cause defects predominantly in the wings (Locke and Tartof, 1994; Slusarski et al., 1995). -
The Adrenal Capsule Is a Signaling Center Controlling Cell Renewal and Zonation Through Rspo3
Downloaded from genesdev.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press RESEARCH COMMUNICATION The permanent cortex is formed through recruitment of The adrenal capsule is a capsular cells in a process that involves SHH signaling signaling center controlling (King et al. 2009). By E17.5, steroidogenic cells have adopted specific expression profiles, with the outermost cell renewal and zonation cell layers (zona glomerulosa [ZG]) producing enzymes Rspo3 that are required for mineralocorticoid production (e.g., through CYP11B2), and deeper layers (zona fasciculata [ZF]) Valerie Vidal,1,2,3,9 Sonia Sacco,1,2,3,9 expressing genes involved in glucocorticoid synthesis Ana Sofia Rocha,1,2,3,8 Fabio da Silva,1,2,3 (Cyp11b1). In humans, but not rodents, a third layer (zona reticularis) can be distinguished that produces an- Clara Panzolini,1,2,3 Typhanie Dumontet,4,5 1,2,3 6 drogens and is located close to the medulla. Several lines Thi Mai Phuong Doan, Jingdong Shan, of evidence suggest that β-catenin plays an important Aleksandra Rak-Raszewska,6 Tom Bird,7 role in adrenal zonation and maintenance. Activation of Seppo Vainio,6 Antoine Martinez,4,5 the β-catenin pathway is restricted to the ZG (Kim et al. and Andreas Schedl1,2,3 2008; Walczak et al. 2014), and ectopic expression leads to the activation of ZG markers in ZF cells (Berthon 1Institute of Biology Valrose, Université de Nice-Sophia, F-06108 et al. 2010). Moreover, β-catenin seems to bind to and con- Nice, France; 2UMR1091, Institut National de la Santé et de la trol the expression of At1r, a gene specifically expressed Recherche Médicale, F-06108 Nice, France; 3CNRS, UMR7277, within the ZG (Berthon et al. -
Tamoxifen Resistance: Emerging Molecular Targets
International Journal of Molecular Sciences Review Tamoxifen Resistance: Emerging Molecular Targets Milena Rondón-Lagos 1,*,†, Victoria E. Villegas 2,3,*,†, Nelson Rangel 1,2,3, Magda Carolina Sánchez 2 and Peter G. Zaphiropoulos 4 1 Department of Medical Sciences, University of Turin, Turin 10126, Italy; [email protected] 2 Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogotá 11001000, Colombia; [email protected] 3 Doctoral Program in Biomedical Sciences, Universidad del Rosario, Bogotá 11001000, Colombia 4 Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge 14183, Sweden; [email protected] * Correspondence: [email protected] (M.R.-L.); [email protected] (V.E.V.); Tel.: +39-01-1633-4127 (ext. 4388) (M.R.-L.); +57-1-297-0200 (ext. 4029) (V.E.V.); Fax: +39-01-1663-5267 (M.R.-L.); +57-1-297-0200 (V.E.V.) † These authors contributed equally to this work. Academic Editor: William Chi-shing Cho Received: 5 July 2016; Accepted: 16 August 2016; Published: 19 August 2016 Abstract: 17β-Estradiol (E2) plays a pivotal role in the development and progression of breast cancer. As a result, blockade of the E2 signal through either tamoxifen (TAM) or aromatase inhibitors is an important therapeutic strategy to treat or prevent estrogen receptor (ER) positive breast cancer. However, resistance to TAM is the major obstacle in endocrine therapy. This resistance occurs either de novo or is acquired after an initial beneficial response. The underlying mechanisms for TAM resistance are probably multifactorial and remain largely unknown. Considering that breast cancer is a very heterogeneous disease and patients respond differently to treatment, the molecular analysis of TAM’s biological activity could provide the necessary framework to understand the complex effects of this drug in target cells. -
GLI2 but Not GLI1/GLI3 Plays a Central Role in the Induction of Malignant Phenotype of Gallbladder Cancer
ONCOLOGY REPORTS 45: 997-1010, 2021 GLI2 but not GLI1/GLI3 plays a central role in the induction of malignant phenotype of gallbladder cancer SHU ICHIMIYA1, HIDEYA ONISHI1, SHINJIRO NAGAO1, SATOKO KOGA1, KUKIKO SAKIHAMA2, KAZUNORI NAKAYAMA1, AKIKO FUJIMURA3, YASUHIRO OYAMA4, AKIRA IMAIZUMI1, YOSHINAO ODA2 and MASAFUMI NAKAMURA4 Departments of 1Cancer Therapy and Research, 2Anatomical Pathology, 3Otorhinolaryngology and 4Surgery and Oncology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812‑8582, Japan Received August 10, 2020; Accepted December 7, 2020 DOI: 10.3892/or.2021.7947 Abstract. We previously reported that Hedgehog (Hh) signal Introduction was enhanced in gallbladder cancer (GBC) and was involved in the induction of malignant phenotype of GBC. In recent Gallbladder cancer (GBC) is the seventh most common gastro- years, therapeutics that target Hh signaling have focused on intestinal carcinoma and accounts for 1.2% of all cancer cases molecules downstream of smoothened (SMO). The three tran- and 1.7% of all cancer-related deaths (1). GBC develops from scription factors in the Hh signal pathway, glioma-associated metaplasia to dysplasia to carcinoma in situ and then to invasive oncogene homolog 1 (GLI1), GLI2, and GLI3, function down- carcinoma over 5‑15 years (2). During this time, GBC exhibits stream of SMO, but their biological role in GBC remains few characteristic symptoms, and numerous cases have already unclear. In the present study, the biological significance of developed into locally advanced or metastasized cancer by the GLI1, GLI2, and GLI3 were analyzed with the aim of devel- time of diagnosis. Gemcitabine (GEM), cisplatin (CDDP), and oping novel treatments for GBC. -
Computational Studies of Gene Regulatory Networks: in Numero Molecular Biology
REVIEWS COMPUTATIONAL STUDIES OF GENE REGULATORY NETWORKS: IN NUMERO MOLECULAR BIOLOGY Jeff Hasty, David McMillen, Farren Isaacs and James J. Collins Remarkable progress in genomic research is leading to a complete map of the building blocks of biology. Knowledge of this map is, in turn, setting the stage for a fundamental description of cellular function at the DNA level. Such a description will entail an understanding of gene regulation, in which proteins often regulate their own production or that of other proteins in a complex web of interactions. The implications of the underlying logic of genetic networks are difficult to deduce through experimental techniques alone, and successful approaches will probably involve the union of new experiments and computational modelling techniques. NONLINEAR DYNAMICS An important theme in post-genomic research will description of gene regulation. If this were a complex In a system governed by probably be the dissection and analysis of the complex electrical circuit, there would be an accompanying set nonlinear dynamics, the rate dynamical interactions involved in gene regulation. of equations that would faithfully describe its func- of change of any variable Although the concepts of protein–DNA feedback loops tionality. This description would be built from a cannot be written as a linear function of the other variables. and network complexity are not new, experimental knowledge of the properties of the individual compo- Most real systems are nonlinear advances are inducing a resurgence of interest in the nents (resistors, capacitors, inductors and so on) and and show interesting quantitative description of gene regulation. These provide a framework for predicting behaviour that behaviours not seen in advances are beginning to allow a ‘modular’ description results from modification of the circuit.