Seed-Specific Overexpression of an Endogenous Arabidopsis Phytoene
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The Biosynthesis of Carotenoids
THE BIOSYNTHESIS OF CAROTENOIDS C. 0. CHICHESTER Department of Food Science and Technology, University of a4fornia, Davis, Galjf 95616, U.S.A. INTRODUCTION Considerable progress has been made in the field of carotenoid bio- chemistry in the last ten to fifteen years. Prior to that very little, if anything, was known about the units which formed the intermediates of the coloured 40—carbon pigments, or the structures of those that were proposed as intermediates. Like all fields of biochemistry, as knowledge is accumulated specific problems are crystallized. These generally concern key areas, which until an understanding is achieved can substantially hinder the unification of a field or problem. The biochemistry of the carotenoids has arrived at this point. INTERMEDIATE COMPOUNDS IN CAROTENOID BIOSYNTHESIS There is general consensus as to the identity of the intermediate com- pounds which form the building blocks of the carotenoids. Studies in Phycornyces blakesleeanus, tomatoes, corn, carrots, Mucor hiemalis, spinach leaves, and bean leaves all coincide to indicate that the common building block of carotenoids is mevalonic acid'—7. Some experiments concerned with carotenoids, and many with sterols, have shown that /3-methyl-/3- hydroxyglutarate-CoA, and/or acetoacetic-CoA, are the normal sources of inevalonic acid" 8 In Phycomyces blalcesleeanus, as well as tomatoes, it has been shown rather unequivocally that the first steps in the conversion of meva- lonic acid to the C—40's are identical to those postulated for the formation of sterols911. The mevalonic acid is converted via the 5-phosphomevalonic acid to the 5-pyrophosphoryl mevalonic acid'2. This compound is then decarboxylated to form the z3-isopentenol pyrophosphate. -
Synthetic Conversion of Leaf Chloroplasts Into Carotenoid-Rich Plastids Reveals Mechanistic Basis of Natural Chromoplast Development
Synthetic conversion of leaf chloroplasts into carotenoid-rich plastids reveals mechanistic basis of natural chromoplast development Briardo Llorentea,b,c,1, Salvador Torres-Montillaa, Luca Morellia, Igor Florez-Sarasaa, José Tomás Matusa,d, Miguel Ezquerroa, Lucio D’Andreaa,e, Fakhreddine Houhouf, Eszter Majerf, Belén Picóg, Jaime Cebollag, Adrian Troncosoh, Alisdair R. Ferniee, José-Antonio Daròsf, and Manuel Rodriguez-Concepciona,f,1 aCentre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Campus UAB Bellaterra, 08193 Barcelona, Spain; bARC Center of Excellence in Synthetic Biology, Department of Molecular Sciences, Macquarie University, Sydney NSW 2109, Australia; cCSIRO Synthetic Biology Future Science Platform, Sydney NSW 2109, Australia; dInstitute for Integrative Systems Biology (I2SysBio), Universitat de Valencia-CSIC, 46908 Paterna, Valencia, Spain; eMax-Planck-Institut für Molekulare Pflanzenphysiologie, 14476 Potsdam-Golm, Germany; fInstituto de Biología Molecular y Celular de Plantas, CSIC-Universitat Politècnica de València, 46022 Valencia, Spain; gInstituto de Conservación y Mejora de la Agrodiversidad, Universitat Politècnica de València, 46022 Valencia, Spain; and hSorbonne Universités, Université de Technologie de Compiègne, Génie Enzymatique et Cellulaire, UMR-CNRS 7025, CS 60319, 60203 Compiègne Cedex, France Edited by Krishna K. Niyogi, University of California, Berkeley, CA, and approved July 29, 2020 (received for review March 9, 2020) Plastids, the defining organelles of plant cells, undergo physiological chromoplasts but into a completely different type of plastids and morphological changes to fulfill distinct biological functions. In named gerontoplasts (1, 2). particular, the differentiation of chloroplasts into chromoplasts The most prominent changes during chloroplast-to-chromo- results in an enhanced storage capacity for carotenoids with indus- plast differentiation are the reorganization of the internal plastid trial and nutritional value such as beta-carotene (provitamin A). -
Genetic Modification of Tomato with the Tobacco Lycopene Β-Cyclase Gene Produces High Β-Carotene and Lycopene Fruit
Z. Naturforsch. 2016; 71(9-10)c: 295–301 Louise Ralley, Wolfgang Schucha, Paul D. Fraser and Peter M. Bramley* Genetic modification of tomato with the tobacco lycopene β-cyclase gene produces high β-carotene and lycopene fruit DOI 10.1515/znc-2016-0102 and alleviation of vitamin A deficiency by β-carotene, Received May 18, 2016; revised July 4, 2016; accepted July 6, 2016 which is pro-vitamin A [4]. Deficiency of vitamin A causes xerophthalmia, blindness and premature death, espe- Abstract: Transgenic Solanum lycopersicum plants cially in children aged 1–4 [5]. Since humans cannot expressing an additional copy of the lycopene β-cyclase synthesise carotenoids de novo, these health-promoting gene (LCYB) from Nicotiana tabacum, under the control compounds must be taken in sufficient quantities in the of the Arabidopsis polyubiquitin promoter (UBQ3), have diet. Consequently, increasing their levels in fruit and been generated. Expression of LCYB was increased some vegetables is beneficial to health. Tomato products are 10-fold in ripening fruit compared to vegetative tissues. the most common source of dietary lycopene. Although The ripe fruit showed an orange pigmentation, due to ripe tomato fruit contains β-carotene, the amount is rela- increased levels (up to 5-fold) of β-carotene, with negli- tively low [1]. Therefore, approaches to elevate β-carotene gible changes to other carotenoids, including lycopene. levels, with no reduction in lycopene, are a goal of Phenotypic changes in carotenoids were found in vegeta- plant breeders. One strategy that has been employed to tive tissues, but levels of biosynthetically related isopre- increase levels of health promoting carotenoids in fruits noids such as tocopherols, ubiquinone and plastoquinone and vegetables for human and animal consumption is were barely altered. -
Direct Regulation of Phytoene Synthase Gene Expression and Carotenoid Biosynthesis by Phytochrome-Interacting Factors
Direct regulation of phytoene synthase gene expression and carotenoid biosynthesis by phytochrome-interacting factors Gabriela Toledo-Ortiza, Enamul Huqb, and Manuel Rodríguez-Concepcióna,1 aCentre for Research in Agricultural Genomics, CSIC-IRTA-UAB, 08034 Barcelona, Spain; and bSection of Molecular Cell and Developmental Biology and Institute for Cellular and Molecular Biology, University of Texas, Austin, TX 78712 Edited* by Peter H. Quail, University of California, Albany, CA, and approved May 14, 2010 (received for review December 15, 2009) Carotenoids are key for plants to optimize carbon fixing using the known about the specific factors involved in this coordinated energy of sunlight. They contribute to light harvesting but also control, however. channel energy away from chlorophylls to protect the photosyn- Although the main pathway for carotenoid biosynthesis in plants thetic apparatus from excess light. Phytochrome-mediated light has been elucidated (9, 10), we still lack fundamental knowledge of signals are major cues regulating carotenoid biosynthesis in plants, the regulation of carotenogenesis in plant cells (11). In fact, to date but we still lack fundamental knowledge on the components of this no regulatory genes directly controlling carotenoid biosynthetic signaling pathway. Here we show that phytochrome-interacting gene expression have been isolated. Nonetheless, it is known that factor 1 (PIF1) and other transcription factors of the phytochrome- a major driving force for carotenoid production in different plant interacting factor (PIF) family down-regulate the accumulation of species is the transcriptional regulation of genes encoding phy- carotenoids by specifically repressing the gene encoding phytoene toene synthase (PSY), the first and main rate-determining enzyme synthase (PSY), the main rate-determining enzyme of the pathway. -
1 AMINO ACIDS Commonly, 21 L-Amino Acids Encoded by DNA Represent the Building Blocks of Animal, Plant, and Microbial Proteins
1 AMINO ACIDS Commonly, 21 L-amino acids encoded by DNA represent the building blocks of animal, plant, and microbial proteins. The basic amino acids encountered in proteins are called proteinogenic amino acids 1.1). Biosynthesis of some of these amino acids proceeds by ribosomal processes only in microorganisms and plants and the ability to synthesize them is lacking in animals, including human beings. These amino acids have to be obtained in the diet (or produced by hydrolysis of body proteins) since they are required for normal good health and are referred to as essential amino acids. The essential amino acids are arginine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, threonine, tryptophan, and valine. The rest of encoded amino acids are referred to as non-essential amino acids (alanine, asparagine, aspartic acid, cysteine, glutamic acid, glutamine, glycine, proline, serine, and tyrosine). Arginine and histidine are classified as essential, sometimes as semi-essential amino acids, as their amount synthesized in the body is not sufficient for normal growth of children. Although it is itself non-essential, cysteine (classified as conditionally essential amino acid) can partly replace methionine, which is an essential amino acid. Similarly, tyrosine can partly replace phenylalanine. 1.1 The glutamic acid group 1.1.1 Glutamic acid and glutamine Free ammonium ions are toxic to living cells and are rapidly incorporated into organic compounds. One of such transformations is the reaction of ammonia with 2-oxoglutaric acid from the citric acid cycle to produce L-glutamic acid. This reaction is known as reductive amination. Glutamic acid is accordingly the amino acid generated first as both constituent of proteins and a biosynthetic precursor. -
Sample Thesis Title with a Concise And
DESIGN, SYNTHESIS AND STUDIES OF GUANIDINIUM-BASED INHIBITORS FOR ISOPRENOID BIOSYNTHETIC PATHWAY ENZYMES by Walid Abdelmagid MChem., The University of Liverpool, 2011 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Doctor of Philosophy in THE FACULTY OF GRADUATE AND POSTDOCTORAL STUDIES (Chemistry) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) October 2019 © Walid Abdelmagid, 2019 i The following individuals certify that they have read, and recommend to the Faculty of Graduate and Postdoctoral Studies for acceptance, the dissertation entitled: DESIGN, SYNTHESIS AND STUDIES OF GUANIDINIUM-BASED INHIBITORS FOR ISOPRENOID BIOSYNTHETIC PATHWAY ENZYMES submitted by Walid Abdelmagid in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Chemistry Examining Committee: Martin Tanner Supervisor Stephen Withers Supervisory Committee Member Glenn Sammis Supervisory Committee Member Kathryn Ryan University Examiner David Chen University Examiner Additional Supervisory Committee Members: Supervisory Committee Member Supervisory Committee Member ii Abstract In this thesis an inhibition strategy was developed to target enzymes that utilize allylic diphosphates. Positively-charged inhibitors that mimic the transition states/intermediates formed with these enzymes were synthesized. In chapter two, inhibitor 2 containing a guanidinium moiety appended to a phosphonylphosphinate was designed to mimic the transition state for the dissociation of dimethylallyl diphosphate into an allylic carbocation-pyrophosphate ion-pair. To test for the effectiveness of incorporating a guanidinium functionality into inhibitors of human farnesyl diphosphate synthase, inhibitors 3 and 4 were also prepared. Inhibitor 3 has a positive charge localized onto one atom, and inhibitor 4 is isosteric to inhibitor 2, but lacks positive charge. The inhibitors displayed IC50 values that were significantly higher than the substrate Km value, indicating that the positive charge did not result in tight binding to the enzyme. -
Multiplicity of Carotene Patterns Derives from Competition Between
www.nature.com/scientificreports OPEN Multiplicity of carotene patterns derives from competition between phytoene desaturase diversifcation and biological environments Mathieu Fournié1,2,3 & Gilles Truan1* Phytoene desaturases catalyse from two to six desaturation reactions on phytoene, generating a large diversity of molecules that can then be cyclised and produce, depending on the organism, many diferent carotenoids. We constructed a phylogenetic tree of a subset of phytoene desaturases from the CrtI family for which functional data was available. We expressed in a bacterial system eight codon optimized CrtI enzymes from diferent clades. Analysis of the phytoene desaturation reactions on crude extracts showed that three CrtI enzymes can catalyse up to six desaturations, forming tetradehydrolycopene. Kinetic data generated using a subset of fve purifed enzymes demonstrate the existence of characteristic patterns of desaturated molecules associated with various CrtI clades. The kinetic data was also analysed using a classical Michaelis–Menten kinetic model, showing that variations in the reaction rates and binding constants could explain the various carotene patterns observed. Competition between lycopene cyclase and the phytoene desaturases modifed the distribution between carotene intermediates when expressed in yeast in the context of the full β-carotene production pathway. Our results demonstrate that the desaturation patterns of carotene molecules in various biological environments cannot be fully inferred from phytoene desaturases classifcation but is governed both by evolutionary-linked variations in the desaturation rates and competition between desaturation and cyclisation steps. Carotenoids are organic pigments produced by plants, algae, fungi, and bacteria and can be subdivided into two families of molecules, carotenes and their oxidised counterparts, xanthophylls 1. -
Chemical Inhibition of Lycopene Β-Cyclases Unmask Operation of Phytoene Synthase 2 in 4 Ripening Tomato Fruits
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.19.452896; this version posted July 22, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Rameshwar Sharma (orcid.org/0000-0002-8775-8986) 2 Yellamaraju Sreelakshmi (orcid.org/0000-0003-3468-9136) 3 Chemical inhibition of lycopene β-cyclases unmask operation of phytoene synthase 2 in 4 ripening tomato fruits 5 Prateek Gupta1, Marta Rodriguez‐Franco2, Reddaiah Bodanapu1,#, Yellamaraju Sreelakshmi1*, 6 and Rameshwar Sharma1* 7 1Repository of Tomato Genomics Resources, Department of Plant Sciences, University of 8 Hyderabad, Hyderabad-500046, India 9 2Department of Cell Biology, Faculty of Biology, University of Freiburg, Freiburg D‐79104, 10 Germany 11 *Corresponding authors: [email protected], [email protected] 12 Short title: Role of PSY2 in tomato fruit carotenogenesis. 13 *Author for Correspondence 14 # Deceased 15 E-mails authors: [email protected] (PG), [email protected] 16 freiburg.de (MR), [email protected] (YS), [email protected] (RS) 17 Date of Submission: July 2021 18 Tables: Nil. 19 Figures: Six. 20 Supplementary figures: Nine. 21 Supplementary tables: Two. 22 Word count: 5602. 23 Highlight: 24 In tomato phytoene synthase 1 mutant fruit, which is bereft of lycopene, the chemical 25 inhibition of lycopene β-cyclases triggers lycopene accumulation. Above lycopene is likely 26 derived from phytoene synthase 2, which is hitherto presumed to be idle in tomato fruits. -
The Effect of Crosstalk Between Abscisic Acid (ABA) And
Genetic Manipulation of the Cross-talk between Abscisic Acid and Strigolactones and Their Biosynthetic Link during Late Tillering in Barley Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Der Naturwissenschaftlichen Fakultät I Biowissenschaften der Martin-Luther-Universität Halle-Wittenberg, vorgelegt von Herrn M.Sc. Hongwen Wang geb. am 10.02.1985 in Gaomi, China Gutachter: 1. Prof. Dr. Nicolaus von Wirén 2. Prof. Dr. Klaus Humbeck 3. Prof. Dr. Harro J. Bouwmeester Datum der Verteidigung: 27.04.2017, Halle (Saale) Contents 1. Introduction ............................................................................................................................ 1 1.1 Genetics of tillering in barley ........................................................................................... 1 1.2 Functional role of abscisic acid in branch or tiller development ...................................... 4 1.3 Abscisic acid biosynthesis and metabolism ...................................................................... 5 1.4 Functional role of strigolactones in branch or tiller development .................................... 7 1.5 Biosynthetic pathway of strigolactones ............................................................................ 8 1.6 The cross-talk between abscisic acid and strigolactones biosynthetic pathways ........... 10 1.7 Aim of the present study ..................................................................................................11 2. Materials and methods ........................................................................................................ -
5 1China Agricultural University, Beijing, China; 2Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
Abscisic acid Jigang Li1, Yaorong Wu2, Qi Xie2, Zhizhong Gong1 5 1China Agricultural University, Beijing, China; 2Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China Summary The classical plant hormone abscisic acid (ABA) was discovered over 50 years ago. ABA accumulates rapidly in plants in response to environmental stresses, such as drought, cold, or high salinity, and plays important roles in the adaptation to and survival of these stresses. This “stress hormone” also functions in many other processes throughout the plant life cycle, acting in embryo development and seed maturation, seed dormancy and germination, seed- ling establishment, vegetative development, root growth, stomatal movement, flowering, pathogen response, and senescence. It is transported in the vascular tissues to coordinate root and shoot development and function. Receptors for ABA have been identified as a family of soluble proteins, which upon binding ABA form coreceptor complexes with phosphoprotein phosphatase 2C (PP2C) phosphoprotein phosphatases. The resulting inhibition of activity of PP2C enzymes leads to changes in phosphorylation of protein kinases and transcription fac- tors, to mediate the multiple effects of ABA. The elucidation of ABA perception mechanisms and the core components of the signal transduction mechanisms from ABA perception to downstream gene expression has expanded our understanding of the functions of ABA. This chapter summarizes our current understanding of the key components of ABA metabolism, transport, physiological functions, signal transduction, gene expression, and proteolysis. 5.1 Discovery and functions of abscisic acid Abscisic acid (ABA), a classic plant hormone, was isolated multiple times in differ- ent studies. Researchers in the early 1950s isolated acidic compounds, referred to as β-inhibitors, from plants; they separated these compounds by paper chromatography and showed that β-inhibitors inhibit coleoptile elongation in oat. -
On the Biosynthesis and Evolution of Apocarotenoid Plant Growth Regulators
On the biosynthesis and evolution of apocarotenoid plant growth regulators. Item Type Article Authors Wang, Jian You; Lin, Pei-Yu; Al-Babili, Salim Citation Wang, J. Y., Lin, P.-Y., & Al-Babili, S. (2020). On the biosynthesis and evolution of apocarotenoid plant growth regulators. Seminars in Cell & Developmental Biology. doi:10.1016/ j.semcdb.2020.07.007 Eprint version Post-print DOI 10.1016/j.semcdb.2020.07.007 Publisher Elsevier BV Journal Seminars in cell & developmental biology Rights NOTICE: this is the author’s version of a work that was accepted for publication in Seminars in cell & developmental biology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Seminars in cell & developmental biology, [, , (2020-08-01)] DOI: 10.1016/j.semcdb.2020.07.007 . © 2020. This manuscript version is made available under the CC- BY-NC-ND 4.0 license http://creativecommons.org/licenses/by- nc-nd/4.0/ Download date 27/09/2021 08:08:14 Link to Item http://hdl.handle.net/10754/664532 1 On the Biosynthesis and Evolution of Apocarotenoid Plant Growth Regulators 2 Jian You Wanga,1, Pei-Yu Lina,1 and Salim Al-Babilia,* 3 Affiliations: 4 a The BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science 5 and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, Saudi 6 Arabia. -
WO 2008/073367 Al
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication Date PCT (10) International Publication Number 19 June 2008 (19.06.2008) WO 2008/073367 Al (51) International Patent Classification: Quinn, Qun [US/US], 544 Revere Road, West Chester, C12N 1/16 (2006 01) C07C 403/24 (2006 01) Pennsylvania 19381 (US) C12N 1/15 (2006 01) (74) Agent: FELTHAM, S., NeU, E I du Pont de Nemours and (21) International Application Number: Company, Legal Patent Records Center, 4417 Lancaster PCT/US2007/025222 Pike, Wilmington, Delaware 19805 (US) (22) International Filing Date: (81) Designated States (unless otherwise indicated for every 10 December 2007 (10 12 2007) kind of national protection available): AE, AG, AL, AM, (25) Filing Language: English AT,AU, AZ, BA, BB, BG, BH, BR, BW, BY,BZ, CA, CH, CN, CO, CR, CU, CZ, DE, DK, DM, DO, DZ, EC, EE, EG, (26) Publication Language: English ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, (30) Priority Data: IN, IS, JP, KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, 60/869,576 12 December 2006 (12 12 2006) US LR, LS, LT, LU, LY,MA, MD, ME, MG, MK, MN, MW, 60/869,574 12 December 2006 (12 12 2006) US MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PG, PH, PL, 60/869,591 12 December 2006 (12 12 2006) US PT, RO, RS, RU, SC, SD, SE, SG, SK, SL, SM, SV, SY, 60/869,582 12 December 2006 (12 12 2006) US TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, 60/869,580 12 December 2006 (12 12 2006) US ZM, ZW (71) Applicant (for all designated States except US): E.