CD4 T Cells in Nonobese Diabetic Mice Genes Controlling
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2020 Program Book
PROGRAM BOOK Note that TAGC was cancelled and held online with a different schedule and program. This document serves as a record of the original program designed for the in-person meeting. April 22–26, 2020 Gaylord National Resort & Convention Center Metro Washington, DC TABLE OF CONTENTS About the GSA ........................................................................................................................................................ 3 Conference Organizers ...........................................................................................................................................4 General Information ...............................................................................................................................................7 Mobile App ....................................................................................................................................................7 Registration, Badges, and Pre-ordered T-shirts .............................................................................................7 Oral Presenters: Speaker Ready Room - Camellia 4.......................................................................................7 Poster Sessions and Exhibits - Prince George’s Exhibition Hall ......................................................................7 GSA Central - Booth 520 ................................................................................................................................8 Internet Access ..............................................................................................................................................8 -
Aneuploidy: Using Genetic Instability to Preserve a Haploid Genome?
Health Science Campus FINAL APPROVAL OF DISSERTATION Doctor of Philosophy in Biomedical Science (Cancer Biology) Aneuploidy: Using genetic instability to preserve a haploid genome? Submitted by: Ramona Ramdath In partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomedical Science Examination Committee Signature/Date Major Advisor: David Allison, M.D., Ph.D. Academic James Trempe, Ph.D. Advisory Committee: David Giovanucci, Ph.D. Randall Ruch, Ph.D. Ronald Mellgren, Ph.D. Senior Associate Dean College of Graduate Studies Michael S. Bisesi, Ph.D. Date of Defense: April 10, 2009 Aneuploidy: Using genetic instability to preserve a haploid genome? Ramona Ramdath University of Toledo, Health Science Campus 2009 Dedication I dedicate this dissertation to my grandfather who died of lung cancer two years ago, but who always instilled in us the value and importance of education. And to my mom and sister, both of whom have been pillars of support and stimulating conversations. To my sister, Rehanna, especially- I hope this inspires you to achieve all that you want to in life, academically and otherwise. ii Acknowledgements As we go through these academic journeys, there are so many along the way that make an impact not only on our work, but on our lives as well, and I would like to say a heartfelt thank you to all of those people: My Committee members- Dr. James Trempe, Dr. David Giovanucchi, Dr. Ronald Mellgren and Dr. Randall Ruch for their guidance, suggestions, support and confidence in me. My major advisor- Dr. David Allison, for his constructive criticism and positive reinforcement. -
Analysis of the Indacaterol-Regulated Transcriptome in Human Airway
Supplemental material to this article can be found at: http://jpet.aspetjournals.org/content/suppl/2018/04/13/jpet.118.249292.DC1 1521-0103/366/1/220–236$35.00 https://doi.org/10.1124/jpet.118.249292 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS J Pharmacol Exp Ther 366:220–236, July 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the s Adverse and Therapeutic Effects of b2-Adrenoceptor Agonists Dong Yan, Omar Hamed, Taruna Joshi,1 Mahmoud M. Mostafa, Kyla C. Jamieson, Radhika Joshi, Robert Newton, and Mark A. Giembycz Departments of Physiology and Pharmacology (D.Y., O.H., T.J., K.C.J., R.J., M.A.G.) and Cell Biology and Anatomy (M.M.M., R.N.), Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Received March 22, 2018; accepted April 11, 2018 Downloaded from ABSTRACT The contribution of gene expression changes to the adverse and activity, and positive regulation of neutrophil chemotaxis. The therapeutic effects of b2-adrenoceptor agonists in asthma was general enriched GO term extracellular space was also associ- investigated using human airway epithelial cells as a therapeu- ated with indacaterol-induced genes, and many of those, in- tically relevant target. Operational model-fitting established that cluding CRISPLD2, DMBT1, GAS1, and SOCS3, have putative jpet.aspetjournals.org the long-acting b2-adrenoceptor agonists (LABA) indacaterol, anti-inflammatory, antibacterial, and/or antiviral activity. Numer- salmeterol, formoterol, and picumeterol were full agonists on ous indacaterol-regulated genes were also induced or repressed BEAS-2B cells transfected with a cAMP-response element in BEAS-2B cells and human primary bronchial epithelial cells by reporter but differed in efficacy (indacaterol $ formoterol . -
Anti-NUDC Antibody (Aa282-331) Rabbit Anti Human Polyclonal Antibody Catalog # ALS17941
10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 Anti-NUDC Antibody (aa282-331) Rabbit Anti Human Polyclonal Antibody Catalog # ALS17941 Specification Anti-NUDC Antibody (aa282-331) - Product Information Application WB, IHC-P, E Primary Accession Q9Y266 Predicted Human, Mouse, Rat Host Rabbit Clonality Polyclonal Isotype IgG Calculated MW 38243 Anti-NUDC Antibody (aa282-331) - Additional Information Gene ID 10726 Alias Symbol NUDC Other Names NUDC, HNUDC, MNUDC, NPD011, Nuclear migration protein nudC Target/Specificity NudC Antibody detects endogenous levels of total NudC protein. Reconstitution & Storage Immunoaffinity purified Precautions Anti-NUDC Antibody (aa282-331) is for research use only and not for use in diagnostic or therapeutic procedures. Anti-NUDC Antibody (aa282-331) - Protein Information Name NUDC Function Plays a role in neurogenesis and neuronal migration (By similarity). Necessary for correct formation of mitotic spindles and chromosome separation during mitosis (PubMed:<a href="http://www.uniprot.org/c itations/12852857" Page 1/2 10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 target="_blank">12852857</a>, PubMed:<a href="http://www.uniprot.org/ci tations/12679384" target="_blank">12679384</a>, PubMed:<a href="http://www.uniprot.org/ci tations/25789526" target="_blank">25789526</a>). Necessary for cytokinesis and cell proliferation (PubMed:<a href="http://www. uniprot.org/citations/12852857" target="_blank">12852857</a>, PubMed:<a href="http://www.uniprot.org/ci tations/12679384" target="_blank">12679384</a>). Cellular Location Cytoplasm, cytoskeleton. Nucleus. Cytoplasm, cytoskeleton, spindle. Midbody Note=In a filamentous pattern adjacent to the nucleus of migrating cerebellar granule cells. -
Structural and Functional Dissection of Reovirus Capsid Folding and Assembly by the Prefoldin-Tric/CCT Chaperone Network
Structural and functional dissection of reovirus capsid folding and assembly by the prefoldin-TRiC/CCT chaperone network Jonathan J. Knowltona,b,1, Daniel Gestautc,1, Boxue Mad,e,f,2, Gwen Taylora,g,2, Alpay Burak Sevenh,i, Alexander Leitnerj, Gregory J. Wilsonk, Sreejesh Shankerl, Nathan A. Yatesm, B. V. Venkataram Prasadl, Ruedi Aebersoldj,n, Wah Chiud,e,f, Judith Frydmanc,3, and Terence S. Dermodya,g,o,3 aDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15224; bDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232; cDepartment of Biology, Stanford University, Stanford, CA 94305; dDepartment of Bioengineering, Stanford University, Stanford, CA 94305; eDepartment of Microbiology and Immunology, Stanford University, Stanford, CA 94305; fDepartment of Photon Science, Stanford University, Stanford, CA 94305; gCenter for Microbial Pathogenesis, UPMC Children’s Hospital of Pittsburgh, Pittsburgh, PA 15224; hDepartment of Structural Biology, Stanford University, Stanford, CA 94305; iDepartment of Molecular and Cellular Physiology, Stanford University, Palo Alto, CA 94305; jDepartment of Biology, Institute of Molecular Systems Biology, ETH Zürich, 8093 Zürich, Switzerland; kDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232; lVerna and Marrs Mclean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030; mDepartment of Cell Biology, University of Pittsburgh School of Medicine, -
A Transcriptional Signature of Postmitotic Maintenance in Neural Tissues
Neurobiology of Aging 74 (2019) 147e160 Contents lists available at ScienceDirect Neurobiology of Aging journal homepage: www.elsevier.com/locate/neuaging Postmitotic cell longevityeassociated genes: a transcriptional signature of postmitotic maintenance in neural tissues Atahualpa Castillo-Morales a,b, Jimena Monzón-Sandoval a,b, Araxi O. Urrutia b,c,*, Humberto Gutiérrez a,** a School of Life Sciences, University of Lincoln, Lincoln, UK b Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, UK c Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, Mexico article info abstract Article history: Different cell types have different postmitotic maintenance requirements. Nerve cells, however, are Received 11 April 2018 unique in this respect as they need to survive and preserve their functional complexity for the entire Received in revised form 3 October 2018 lifetime of the organism, and failure at any level of their supporting mechanisms leads to a wide range of Accepted 11 October 2018 neurodegenerative conditions. Whether these differences across tissues arise from the activation of Available online 19 October 2018 distinct cell typeespecific maintenance mechanisms or the differential activation of a common molecular repertoire is not known. To identify the transcriptional signature of postmitotic cellular longevity (PMCL), Keywords: we compared whole-genome transcriptome data from human tissues ranging in longevity from 120 days Neural maintenance Cell longevity to over 70 years and found a set of 81 genes whose expression levels are closely associated with Transcriptional signature increased cell longevity. Using expression data from 10 independent sources, we found that these genes Functional genomics are more highly coexpressed in longer-living tissues and are enriched in specific biological processes and transcription factor targets compared with randomly selected gene samples. -
Open Data for Differential Network Analysis in Glioma
International Journal of Molecular Sciences Article Open Data for Differential Network Analysis in Glioma , Claire Jean-Quartier * y , Fleur Jeanquartier y and Andreas Holzinger Holzinger Group HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, 8036 Graz, Austria; [email protected] (F.J.); [email protected] (A.H.) * Correspondence: [email protected] These authors contributed equally to this work. y Received: 27 October 2019; Accepted: 3 January 2020; Published: 15 January 2020 Abstract: The complexity of cancer diseases demands bioinformatic techniques and translational research based on big data and personalized medicine. Open data enables researchers to accelerate cancer studies, save resources and foster collaboration. Several tools and programming approaches are available for analyzing data, including annotation, clustering, comparison and extrapolation, merging, enrichment, functional association and statistics. We exploit openly available data via cancer gene expression analysis, we apply refinement as well as enrichment analysis via gene ontology and conclude with graph-based visualization of involved protein interaction networks as a basis for signaling. The different databases allowed for the construction of huge networks or specified ones consisting of high-confidence interactions only. Several genes associated to glioma were isolated via a network analysis from top hub nodes as well as from an outlier analysis. The latter approach highlights a mitogen-activated protein kinase next to a member of histondeacetylases and a protein phosphatase as genes uncommonly associated with glioma. Cluster analysis from top hub nodes lists several identified glioma-associated gene products to function within protein complexes, including epidermal growth factors as well as cell cycle proteins or RAS proto-oncogenes. -
OSBPL9 (NM 148907) Human Tagged ORF Clone Lentiviral Particle Product Data
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for RC221526L4V OSBPL9 (NM_148907) Human Tagged ORF Clone Lentiviral Particle Product data: Product Type: Lentiviral Particles Product Name: OSBPL9 (NM_148907) Human Tagged ORF Clone Lentiviral Particle Symbol: OSBPL9 Synonyms: ORP-9; ORP9 Vector: pLenti-C-mGFP-P2A-Puro (PS100093) ACCN: NM_148907 ORF Size: 1878 bp ORF Nucleotide The ORF insert of this clone is exactly the same as(RC221526). Sequence: OTI Disclaimer: The molecular sequence of this clone aligns with the gene accession number as a point of reference only. However, individual transcript sequences of the same gene can differ through naturally occurring variations (e.g. polymorphisms), each with its own valid existence. This clone is substantially in agreement with the reference, but a complete review of all prevailing variants is recommended prior to use. More info OTI Annotation: This clone was engineered to express the complete ORF with an expression tag. Expression varies depending on the nature of the gene. RefSeq: NM_148907.1 RefSeq Size: 2694 bp RefSeq ORF: 1881 bp Locus ID: 114883 UniProt ID: Q96SU4 MW: 70.1 kDa This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 OSBPL9 (NM_148907) Human Tagged ORF Clone Lentiviral Particle – RC221526L4V Gene Summary: This gene encodes a member of the oxysterol-binding protein (OSBP) family, a group of intracellular lipid receptors. -
N-Acetyl-D-Glucosamine Kinase Interacts with Nudc and Lis1 in Dynein Motor Complex and Promotes Cell Migration
International Journal of Molecular Sciences Article N-Acetyl-D-Glucosamine Kinase Interacts with NudC and Lis1 in Dynein Motor Complex and Promotes Cell Migration Md. Ariful Islam 1,†, Ho Jin Choi 1, Raju Dash 1 , Syeda Ridita Sharif 1,‡, Diyah Fatimah Oktaviani 1 , Dae-Hyun Seog 2 and Il Soo Moon 1,3,* 1 Department of Anatomy, Dongguk University College of Medicine, Gyeongju 38066, Korea; [email protected] (M.A.I.); [email protected] (H.J.C.); [email protected] (R.D.); [email protected] (S.R.S.); [email protected] (D.F.O.) 2 Department of Biochemistry, Dementia and Neurodegenerative Disease Research Center, Inje University College of Medicine, Busan 47392, Korea; [email protected] 3 Dongguk Medical Institute, Dongguk University College of Medicine, Gyeongju 38066, Korea * Correspondence: [email protected]; Tel.: +82-54-770-2414; Fax: +82-54-770-2447 † Current address: Departments of Biological Sciences & Brain and Cognitive Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea. ‡ Current address: Department of Pharmacy, University of Science and Technology Chittagong, Chittagong 4202, Bangladesh. Abstract: Recently, we showed that N-acetylglucosamine kinase (NAGK), an enzyme of amino sugar metabolism, interacts with dynein light chain roadblock type 1 (DYNLRB1) and promotes the functions of dynein motor. Here, we report that NAGK interacts with nuclear distribution protein C (NudC) and lissencephaly 1 (Lis1) in the dynein complex. Yeast two-hybrid assays, pull-down assays, immunocy- tochemistry, and proximity ligation assays revealed NAGK–NudC–Lis1–dynein complexes around nuclei, at the leading poles of migrating HEK293T cells, and at the tips of migratory processes of cultured rat neuroblast cells. -
OSBPL9 (NM 148906) Human Tagged ORF Clone – RC221011L3
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for RC221011L3 OSBPL9 (NM_148906) Human Tagged ORF Clone Product data: Product Type: Expression Plasmids Product Name: OSBPL9 (NM_148906) Human Tagged ORF Clone Tag: Myc-DDK Symbol: OSBPL9 Synonyms: ORP-9; ORP9 Vector: pLenti-C-Myc-DDK-P2A-Puro (PS100092) E. coli Selection: Chloramphenicol (34 ug/mL) Cell Selection: Puromycin ORF Nucleotide The ORF insert of this clone is exactly the same as(RC221011). Sequence: Restriction Sites: SgfI-MluI Cloning Scheme: ACCN: NM_148906 ORF Size: 1713 bp This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 OSBPL9 (NM_148906) Human Tagged ORF Clone – RC221011L3 OTI Disclaimer: The molecular sequence of this clone aligns with the gene accession number as a point of reference only. However, individual transcript sequences of the same gene can differ through naturally occurring variations (e.g. polymorphisms), each with its own valid existence. This clone is substantially in agreement with the reference, but a complete review of all prevailing variants is recommended prior to use. More info OTI Annotation: This clone was engineered to express the complete ORF with an expression tag. Expression varies depending on the nature of the gene. RefSeq: NM_148906.1, NP_683704.1 RefSeq Size: 2840 bp RefSeq ORF: 2160 bp Locus ID: 114883 UniProt ID: Q96SU4 MW: 63.7 kDa Gene Summary: This gene encodes a member of the oxysterol-binding protein (OSBP) family, a group of intracellular lipid receptors. -
Adverse Childhood Experiences, Epigenetic Measures, and Obesity in Youth
ORIGINAL www.jpeds.com • THE JOURNAL OF PEDIATRICS ARTICLES Adverse Childhood Experiences, Epigenetic Measures, and Obesity in Youth Joan Kaufman, PhD1,2,3, Janitza L. Montalvo-Ortiz, PhD3, Hannah Holbrook,BA4, Kerry O'Loughlin,BA4, Catherine Orr, PhD4, Catherine Kearney,MA1, Bao-Zhu Yang, PhD3, Tao Wang, PhD5,6, Hongyu Zhao, PhD5, Robert Althoff, MD, PhD4, Hugh Garavan, PhD4, Joel Gelernter,MD3,7, and James Hudziak,MD4 Objective To determine if measures of adverse childhood experiences and DNA methylation relate to indices of obesity in youth. Study design Participants were derived from a cohort of 321 8 to 15-year-old children recruited for an investi- gation examining risk and resilience and psychiatric outcomes in maltreated children. Assessments of obesity were collected as an add-on for a subset of 234 participants (56% female; 52% maltreated). Illumina arrays were used to examine whole genome epigenetic predictors of obesity in saliva DNA. For analytic purposes, the cohort ana- lyzed in the first batch comprised the discovery sample (n = 160), and the cohort analyzed in the second batch the replication sample (n = 74). Results After controlling for race, sex, age, cell heterogeneity, 3 principal components, and whole genome testing, 10 methylation sites were found to interact with adverse childhood experiences to predict cross-sectional mea- sures of body mass index, and an additional 6 sites were found to exert a main effect in predicting body mass index (P < 5.0 × 10−7, all comparisons). Eight of the methylation sites were in genes previously associated with obesity risk (eg, PCK2, CxCl10, BCAT1, HID1, PRDM16, MADD, PXDN, GALE), with several of the findings from the dis- covery data set replicated in the second cohort. -
Identification of Genes Associated with Castration‑Resistant Prostate Cancer by Gene Expression Profile Analysis
MOLECULAR MEDICINE REPORTS 16: 6803-6813, 2017 Identification of genes associated with castration‑resistant prostate cancer by gene expression profile analysis CHUI GUO HUANG1, FENG XI LI2, SONG PAN3, CHANG BAO XU1, JUN QIANG DAI4 and XING HUA ZHAO1 1Department of Urology, The Second Affiliated Hospital, Zhengzhou University, Zhengzhou, Henan 450014; 2Department of Gastrointestinal Glands Surgery, The First Affiliated Hospital, Guangxi Medical University, Nanning, Guangxi 530000; 3Department of Urology, The First Affiliated Hospital, Zhengzhou University, Zhengzhou, Henan 450014; 4Department of Neurosurgery, The Second Affiliated Hospital, Lanzhou University, Lanzhou, Gansu 730030, P.R. China Received December 16, 2016; Accepted July 17, 2017 DOI: 10.3892/mmr.2017.7488 Abstract. Prostate cancer (CaP) is a serious and common western countries (1). CaP growth is driven by androgens; genital tumor. Generally, men with metastatic CaP can easily therefore, the conventional treatment option is to lower the develop castration-resistant prostate cancer (CRPC). However, levels of male sex hormones (2). Current treatment strate- the pathogenesis and tumorigenic pathways of CRPC remain to gies for CaP include surgery, external beam radiotherapy, be elucidated. The present study performed a comprehensive brachytherapy, chemotherapy and androgen-deprivation analysis on the gene expression profile of CRPC in order to therapy (ADT) (2,3). ADT often involves surgically determine the pathogenesis and tumorigenic of CRPC. The removing the testicles or using drugs to block the andro- GSE33316 microarray, which consisted of 5 non-castrated gens from affecting the body (4). Unfortunately, ADT has samples and 5 castrated samples, was downloaded from the gene a limited role in preventing majority of patients progressing expression omnibus database.