Lhx2 Regulates the Timing of Β-Catenin-Dependent Cortical Neurogenesis
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TINCR Inhibits the Proliferation and Invasion of Laryngeal Squamous Cell
He et al. BMC Cancer (2021) 21:753 https://doi.org/10.1186/s12885-021-08513-0 RESEARCH ARTICLE Open Access TINCR inhibits the proliferation and invasion of laryngeal squamous cell carcinoma by regulating miR-210/BTG2 Guoqing He1†, Rui Pang2†, Jihua Han2, Jinliang Jia2, Zhaoming Ding2, Wen Bi2, Jiawei Yu2, Lili Chen2, Jiewu Zhang2* and Yanan Sun1* Abstract Background: Terminal differentiation-induced ncRNA (TINCR) plays an essential role in epidermal differentiation and is involved in the development of various cancers. Methods: qPCR was used to detect the expression level of TINCR in tissues and cell lines of laryngeal squamous cell carcinoma (LSCC). The potential targets of TINCR were predicted by the bioinformation website. The expression of miR-210 and BTG2 genes were detected by qPCR, and the protein levels of BTG2 and Ki-67 were evaluated by western blot. CCK-8 assay, scratch test, and transwell chamber were used to evaluate the proliferation, invasion, and metastasis ability of LSCC cells. The relationships among TINCR, miR-210, and BTG2 were investigated by bioinformatics software and luciferase reporter assay. The in vivo function of TINCR was accessed on survival rate and tumor growth in nude mice. Results: We used qRT-PCR to detect the expression of TINCR in laryngeal squamous cell carcinoma (LSCC) tissues and cells and found significantly lower levels in cancer tissues compared with adjacent tissues. Additionally, patients with high TINCR expression had a better prognosis. TINCR overexpression was observed to inhibit the proliferation and invasion of LSCC cells. TINCR was shown to exert its antiproliferation and invasion effects by adsorbing miR- 210, which significantly promoted the proliferation and invasion of laryngeal squamous cells. -
Neuregulin 1–Erbb2 Signaling Is Required for the Establishment of Radial Glia and Their Transformation Into Astrocytes in Cerebral Cortex
Neuregulin 1–erbB2 signaling is required for the establishment of radial glia and their transformation into astrocytes in cerebral cortex Ralf S. Schmid*, Barbara McGrath*, Bridget E. Berechid†, Becky Boyles*, Mark Marchionni‡, Nenad Sˇ estan†, and Eva S. Anton*§ *University of North Carolina Neuroscience Center and Department of Cell and Molecular Physiology, University of North Carolina School of Medicine, Chapel Hill, NC 27599; †Department of Neurobiology, Yale University School of Medicine, New Haven, CT 06510; and ‡CeNes Pharamceuticals, Inc., Norwood, MA 02062 Communicated by Pasko Rakic, Yale University School of Medicine, New Haven, CT, January 27, 2003 (received for review December 12, 2002) Radial glial cells and astrocytes function to support the construction mine whether NRG-1-mediated signaling is involved in radial and maintenance, respectively, of the cerebral cortex. However, the glial cell development and differentiation in the cerebral cortex. mechanisms that determine how radial glial cells are established, We show that NRG-1 signaling, involving erbB2, may act in maintained, and transformed into astrocytes in the cerebral cortex are concert with Notch signaling to exert a critical influence in the not well understood. Here, we show that neuregulin-1 (NRG-1) exerts establishment, maintenance, and appropriate transformation of a critical role in the establishment of radial glial cells. Radial glial cell radial glial cells in cerebral cortex. generation is significantly impaired in NRG mutants, and this defect can be rescued by exogenous NRG-1. Down-regulation of expression Materials and Methods and activity of erbB2, a member of the NRG-1 receptor complex, leads Clonal Analysis to Study NRG’s Role in the Initial Establishment of to the transformation of radial glial cells into astrocytes. -
BTG2: a Rising Star of Tumor Suppressors (Review)
INTERNATIONAL JOURNAL OF ONCOLOGY 46: 459-464, 2015 BTG2: A rising star of tumor suppressors (Review) BIjING MAO1, ZHIMIN ZHANG1,2 and GE WANG1 1Cancer Center, Institute of Surgical Research, Daping Hospital, Third Military Medical University, Chongqing 400042; 2Department of Oncology, Wuhan General Hospital of Guangzhou Command, People's Liberation Army, Wuhan, Hubei 430070, P.R. China Received September 22, 2014; Accepted November 3, 2014 DOI: 10.3892/ijo.2014.2765 Abstract. B-cell translocation gene 2 (BTG2), the first 1. Discovery of BTG2 in TOB/BTG gene family gene identified in the BTG/TOB gene family, is involved in many biological activities in cancer cells acting as a tumor The TOB/BTG genes belong to the anti-proliferative gene suppressor. The BTG2 expression is downregulated in many family that includes six different genes in vertebrates: TOB1, human cancers. It is an instantaneous early response gene and TOB2, BTG1 BTG2/TIS21/PC3, BTG3 and BTG4 (Fig. 1). plays important roles in cell differentiation, proliferation, DNA The conserved domain of BTG N-terminal contains two damage repair, and apoptosis in cancer cells. Moreover, BTG2 regions, named box A and box B, which show a high level of is regulated by many factors involving different signal path- homology to the other domains (1-5). Box A has a major effect ways. However, the regulatory mechanism of BTG2 is largely on cell proliferation, while box B plays a role in combination unknown. Recently, the relationship between microRNAs and with many target molecules. Compared with other family BTG2 has attracted much attention. MicroRNA-21 (miR-21) members, BTG1 and BTG2 have an additional region named has been found to regulate BTG2 gene during carcinogenesis. -
Integrative Differential Expression and Gene Set Enrichment Analysis Using Summary Statistics for Scrna-Seq Studies
ARTICLE https://doi.org/10.1038/s41467-020-15298-6 OPEN Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies ✉ Ying Ma 1,7, Shiquan Sun 1,7, Xuequn Shang2, Evan T. Keller 3, Mengjie Chen 4,5 & Xiang Zhou 1,6 Differential expression (DE) analysis and gene set enrichment (GSE) analysis are commonly applied in single cell RNA sequencing (scRNA-seq) studies. Here, we develop an integrative 1234567890():,; and scalable computational method, iDEA, to perform joint DE and GSE analysis through a hierarchical Bayesian framework. By integrating DE and GSE analyses, iDEA can improve the power and consistency of DE analysis and the accuracy of GSE analysis. Importantly, iDEA uses only DE summary statistics as input, enabling effective data modeling through com- plementing and pairing with various existing DE methods. We illustrate the benefits of iDEA with extensive simulations. We also apply iDEA to analyze three scRNA-seq data sets, where iDEA achieves up to five-fold power gain over existing GSE methods and up to 64% power gain over existing DE methods. The power gain brought by iDEA allows us to identify many pathways that would not be identified by existing approaches in these data. 1 Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA. 2 School of Computer Science, Northwestern Polytechnical University, Xi’an, Shaanxi 710072, P.R. China. 3 Department of Urology, University of Michigan, Ann Arbor, MI 48109, USA. 4 Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA. 5 Section of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, IL 60637, USA. -
Inactivation of Erk1 and Erk2 Disrupts Cortical
INACTIVATION OF ERK1 AND ERK2 DISRUPTS CORTICAL PROGENITOR PROLIFERATION LEADING TO ABNORMAL CYTOARCHITECTURE, CIRCUITRY AND BEHAVIOR, MODELING HUMAN NCFC AND RELATED SYNDROMES. by JOANNA PUCILOWSKA Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Dissertation Advisor: Dr. Gary E. Landreth Department of Neurosciences CASE WESTERN RESERVE UNIVERSITY August 2012 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of Joanna Pucilowska candidate for the PhD degree*. (signed) Robert Miller (chair of the committee) Gary Landreth Jerry Silver Stephen Maricich (date) 5/29/2012 *We also certify that written approval has been obtained for any proprietary material contained within. 2 TABLE OF CONTENTS List of figures……...……………………………………………………………….….6 ABSTRACT…...………………………………………………………………….…..9 CHAPTER 1: INTRODUCTION………………………………………………………….11 MAP KINASE Signaling Pathway………………………………………………...11 MAPK Specificity: The Right Place at the Right Time………………………..…16 ERKs and Isoform Specificity………………..…………………………………….23 ERKs in Learning and Memory………………………..………………………….26 ERKs and their FGF Ligands………………………..…………………………….28 CORTICAL DEVELOPMENT: Forebrain Regionalization and Morphogenesis………..…………………31 The Role of Cell Cycle in Corticogenesis……..…………...………………33 ERKs and the Cell Cycle Progression…………………..…………………36 Progenitor Proliferation and Neurogenesis………………..……………...39 Migration…………………..………………………………………………..45 Gliogenesis…………………………………………………………..………47 Differentiation……………………………………………………..………..48 -
BTG2 Loss and Mir-21 Upregulation Contribute to Prostate Cell Transformation by Inducing Luminal Markers Expression and Epithelial–Mesenchymal Transition
Oncogene (2013) 32, 1843–1853 & 2013 Macmillan Publishers Limited All rights reserved 0950-9232/13 www.nature.com/onc ORIGINAL ARTICLE BTG2 loss and miR-21 upregulation contribute to prostate cell transformation by inducing luminal markers expression and epithelial–mesenchymal transition V Coppola1,6, M Musumeci1,6, M Patrizii1, A Cannistraci1, A Addario1, M Maugeri-Sacca` 2, M Biffoni1, F Francescangeli1, M Cordenonsi3, S Piccolo3, L Memeo4, A Pagliuca1, G Muto5, A Zeuner1, R De Maria2,6 and D Bonci1,6 Prostate cancer is one of the leading causes of cancer-related death in men. Despite significant advances in prostate cancer diagnosis and management, the molecular events involved in the transformation of normal prostate cells into cancer cells have not been fully understood. It is generally accepted that prostate cancer derives from the basal compartment while expressing luminal markers. We investigated whether downregulation of the basal protein B-cell translocation gene 2 (BTG2) is implicated in prostate cancer transformation and progression. Here we show that BTG2 loss can shift normal prostate basal cells towards luminal markers expression, a phenotype also accompanied by the appearance of epithelial–mesenchymal transition (EMT) traits. We also show that the overexpression of microRNA (miR)-21 suppresses BTG2 levels and promotes the acquisition of luminal markers and EMT in prostate cells. Furthermore, by using an innovative lentiviral vector able to compete with endogenous mRNA through the overexpression of the 30-untranslated region of BTG2, we demonstrate that in prostate tumor cells, the levels of luminal and EMT markers can be reduced by derepression of BTG2 from microRNA-mediated control. -
Up-Regulation of the BTG2 Gene in TPA- Or RA-Treated HL-60 Cell Lines
633-637 6/2/08 15:51 Page 633 ONCOLOGY REPORTS 19: 633-637, 2008 633 Up-regulation of the BTG2 gene in TPA- or RA-treated HL-60 cell lines BYOUNG-OK CHO1, YONG-WOOK JEONG2, SEOUNG-HOON KIM3, KUN PARK4, JI-HYE LEE5, GI RYANG KWEON6 and JONG-CHUN PARK2 1Department of Pharmacology, College of Medicine, Chosun University, 375 Seosuk-Dong, Dong-ku, Gwangju 501-759; Departments of 2Microbiology and 3Pharmacology, College of Medicine, Seonam University, Kwangchi-Dong 720, Namwon, Chunpook 590-711; Departments of 4Dermatology and 5Internal Medicine and College of Medicine Eulji University, Hagye 1-dong, Nowon-gu, Seoul 139-711; 6Department of Biochemistry, School of Medicine, Chungnam National University, Joong-ku, Taejon 301-721, Korea Received August 9, 2007; Accepted October 8, 2007 Abstract. The key pathogenesis of leukemia is the defection Introduction of the differentiation processes of hematopoietic stem cells. There are five APRO (anti-proliferative) genes, BTG1, The human leukemia HL-60 cell line was derived from a BTG2, BTG3, TOB and TOB2, and it was reported that female patient diagnosed with acute promyelocytic leukemia. certain APRO genes are associated with cell differentiation. The HL-60 cells are differentiated into monocyte/macrophage- However, it is still unknown whether APRO genes are related like lineages by 12-O-tetradecanoylphorbol-13-acetate (TPA) with the differentiation process of blood cells. In this study, or granulocyte-like lineages by RA treatment (1,2). The TPA- we investigated the expression of APRO genes in 12-O-tetra- or RA-induced differentiation of HL-60 cells is characterized decanoylphorbol-13-acetate (TPA) or retinoic acid (RA)- by cell cycle arrest through the up-regulation of a cell cycle treated HL-60 cell lines. -
Modeling Cortical Development and Microcephaly in Human Pluripotent Stem Cells Using Combinatorial Pathway Inhibition
Modeling cortical development and microcephaly in human pluripotent stem cells using combinatorial pathway inhibition Dissertation to obtain the academic degree Doctor rerum naturalium (Dr. rer. nat.) submitted to the Department of Biology, Chemistry and Pharmacy of Freie Universität Berlin by Naresh Mutukula 2019 The research work for this dissertation was performed from July 2014 to May 2019 under the supervision of Dr. Yechiel Elkabetz at the Max Planck Institute for Molecular Genetics in Berlin, Germany. The dissertation was submitted in May 2019 to the Department of Biology, Chemistry and Pharmacy of the Freie Universität Berlin, Germany. 1st Reviewer: Dr. Yechiel Elkabetz Max Planck Institute for Molecular Genetics, Berlin. 2nd Reviewer: Prof. Dr. Sigmar Stricker Freie Universität Berlin Date of disputation: 18th Nov, 2019 Acknowledgements First and foremost, I would like to express my deep gratitude to my supervisor Dr. Yechiel Elkabetz for giving me the opportunity to work in his lab and introducing me to the very exciting world of pluripotent and neural stem cell biology research. I am very grateful to him for his excellent supervision, constant support and immense patience he has shown in both good and bad times during all these years of my PhD. I would like to thank him for all the teachings and discussions including non- academics during the last few years. Secondly, I would like to thank Prof. Dr. Sigmar Stricker for accepting to be the second reviewer of my PhD dissertation. I am very thankful to my good friend Rotem Volkman from Tel Aviv University, who was there for me during the initial phase of my PhD. -
Detailed Field Pattern Is Intrinsic to the Embryonic Mouse Hippocampus Early in Neurogenesis
The Journal of Neuroscience, March 1, 2001, 21(5):1580–1589 Detailed Field Pattern Is Intrinsic to the Embryonic Mouse Hippocampus Early in Neurogenesis Shubha Tole and Elizabeth A. Grove Department of Neurobiology, Pharmacology and Physiology, Committees on Developmental Biology and Neurobiology, University of Chicago, Chicago, Illinois 60637 There is accumulating evidence that the mammalian cerebral ble sources of patterning signals intrinsic to the explants were cortex is regionally specified early in neurogenesis. However, evaluated by removing the cortical hem or presumptive extra- the degree and scale of the regional pattern that is intrinsic to hippocampal cortex from the explants. To expose cells to dif- different parts of the cortical primordium remains unclear. Here, ferent local positional cues, explant fragments were grafted into we show that detailed patterning—the accurate positioning of ectopic positions in a larger explant. None of these manipula- several areas or fields—is intrinsic to the part of the primordium tions altered the development of patterned, field-specific gene that generates the hippocampus. A caudomedial portion of the expression. Finally, explants harvested at E10.5 also upregulate cortical primordium, the site from which the hippocampus field-specific gene expression, although less robustly. Some arises, was isolated from potential extrinsic patterning cues by hippocampal patterning information is therefore intrinsic to the maintaining it in explant culture. Explants were prepared at caudomedial cortical primordium at the time that the first hip- embryonic day (E) 12.5, which is early in hippocampal neuro- pocampal neurons are born at E10.5. By E12.5, hippocampal genesis in the mouse and 3 d before individual fields are seen field patterning appears to be well established and resistant to by differential gene expression. -
Coordinated Regulation of Synthesis and Stability of RNA During the Acute TNF-Induced Proinflammatory Response
Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response Michelle T. Paulsena, Artur Velosoa,b, Jayendra Prasada, Karan Bedia,c, Emily A. Ljungmana, Ya-Chun Tsana,c, Ching-Wei Changa,d, Brendan Tarriere, Joseph G. Washburne, Robert Lyonse, Daniel R. Robinsonf, Chandan Kumar-Sinhaf, Thomas E. Wilsonf,g, and Mats Ljungmana,c,1 aDepartment of Radiation Oncology, University of Michigan Comprehensive Cancer Center and Translational Oncology Program, bBioinformatics Program, Department of Computational Medicine and Bioinformatics, cDepartment of Environmental Health Sciences, School of Public Health, dBiomedical Engineering, fDepartment of Pathology, gDepartment of Human Genetics, and eUniversity of Michigan DNA Sequencing Core, University of Michigan, Ann Arbor, MI 48109 Edited by Roy Parker, University of Colorado, Boulder, CO, and approved December 20, 2012 (received for review November 5, 2012) Steady-state gene expression is a coordination of synthesis and homeostasis and in the reprogramming of gene expression dur- decay of RNA through epigenetic regulation, transcription factors, ing the acute TNF-induced proinflammatory response. micro RNAs (miRNAs), and RNA-binding proteins. Here, we present bromouride labeling and sequencing (Bru-Seq) and bromouridine Results pulse-chase and sequencing (BruChase-Seq) to assess genome- Metabolic Labeling of Nascent RNA with Bromouridine. To explore wide changes to RNA synthesis and stability in human fibroblasts the contributions of both transcriptional -
Mechanism of Translation Regulation of BTG1 by Eif3 Master's Thesis
Mechanism of Translation Regulation of BTG1 by eIF3 Master’s Thesis Presented to The Faculty of the Graduate School of Arts and Sciences Brandeis University Department of Biology Amy S.Y. Lee, Advisor In Partial Fulfillment of the Requirements for the Degree Master of Science in Biology by Shih-Ming (Annie) Huang May 2019 Copyright by Shih-Ming (Annie) Huang © 2019 ACKNOWLEDGEMENT I would like to express my deepest gratitude to Dr. Amy S.Y. Lee for her continuous patience, support, encouragement, and guidance throughout this journey. I am very thankful for all the members of the Lee Lab for providing me with this caring and warm environment to complete my work. I would also like to thank Dr. James NuñeZ for collaborating with us on this project and helping us in any shape or form. iii ABSTRACT Mechanism of Translation Regulation of BTG1 by eIF3 A thesis presented to the Department of Biology Graduate School of Arts and Sciences Brandeis University Waltham, Massachusetts By Shih-Ming (Annie) Huang REDACTED iv TABLE OF CONTENTS REDACTED v LIST OF FIGURES REDACTED vi INTRODUCTION I. Gene Regulation All cells in our bodies contain the same genome, but distinct cell types express very different sets of genes. The sets of gene expressed under specific conditions determine what the cell can do, by controlling the proteins and functional RNAs the cell contains. The process of controlling which genes are expressed is known as gene regulation. Any step along the gene expression pathway can be controlled, from DNA transcription, translation of mRNAs into proteins, to post-translational modifications. -
Cell Type-Dependent Control of P53 Transcription and Enhancer Activity by P63
bioRxiv preprint first posted online Feb. 21, 2018; doi: http://dx.doi.org/10.1101/268649. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license. Cell type-dependent control of p53 transcription and enhancer activity by p63 Gizem Karsli Uzunbas, Faraz Ahmed, and Morgan A. Sammons* Department of Biological Sciences, State University of New York at Albany, Albany, NY 12222 * To whom correspondence should be addressed. Tel: 518-4424326; Fax: 518-4424767; Email: [email protected] ABSTRACT Transcriptional activation by p53 provides powerful, organism-wide tumor suppression. In this work, we demonstrate that the p53-induced transcriptome varies based on cell type, reflects cell type-specific activities, and is considerably more broad than previously anticipated. This behavior is strongly influenced by p53 engagement with differentially active cell type-specific enhancers and promoters. In epithelial cell types, p53 activity is dependent on the p53 family member p63, which displays widespread enhancer binding. Notably, we demonstrate that p63 is required for epithelial enhancer identity including enhancers used by p53 during stress-dependent signaling. Loss of p63, but not p53, leads to site-specific depletion of enhancer-associated chromatin modifications, suggesting that p63 functions as an enhancer maintenance factor in epithelial cells. Additionally, a subset of epithelial-specific enhancers are dependent on the activity of p63 providing a direct link between lineage determination and enhancer structure. These data suggest a broad, cell-intrinsic mechanism for regulating the p53-dependent cellular response to stress through differential regulation of cis-regulatory elements.