BTG2: a Rising Star of Tumor Suppressors (Review)
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TINCR Inhibits the Proliferation and Invasion of Laryngeal Squamous Cell
He et al. BMC Cancer (2021) 21:753 https://doi.org/10.1186/s12885-021-08513-0 RESEARCH ARTICLE Open Access TINCR inhibits the proliferation and invasion of laryngeal squamous cell carcinoma by regulating miR-210/BTG2 Guoqing He1†, Rui Pang2†, Jihua Han2, Jinliang Jia2, Zhaoming Ding2, Wen Bi2, Jiawei Yu2, Lili Chen2, Jiewu Zhang2* and Yanan Sun1* Abstract Background: Terminal differentiation-induced ncRNA (TINCR) plays an essential role in epidermal differentiation and is involved in the development of various cancers. Methods: qPCR was used to detect the expression level of TINCR in tissues and cell lines of laryngeal squamous cell carcinoma (LSCC). The potential targets of TINCR were predicted by the bioinformation website. The expression of miR-210 and BTG2 genes were detected by qPCR, and the protein levels of BTG2 and Ki-67 were evaluated by western blot. CCK-8 assay, scratch test, and transwell chamber were used to evaluate the proliferation, invasion, and metastasis ability of LSCC cells. The relationships among TINCR, miR-210, and BTG2 were investigated by bioinformatics software and luciferase reporter assay. The in vivo function of TINCR was accessed on survival rate and tumor growth in nude mice. Results: We used qRT-PCR to detect the expression of TINCR in laryngeal squamous cell carcinoma (LSCC) tissues and cells and found significantly lower levels in cancer tissues compared with adjacent tissues. Additionally, patients with high TINCR expression had a better prognosis. TINCR overexpression was observed to inhibit the proliferation and invasion of LSCC cells. TINCR was shown to exert its antiproliferation and invasion effects by adsorbing miR- 210, which significantly promoted the proliferation and invasion of laryngeal squamous cells. -
Location Analysis of Estrogen Receptor Target Promoters Reveals That
Location analysis of estrogen receptor ␣ target promoters reveals that FOXA1 defines a domain of the estrogen response Jose´ e Laganie` re*†, Genevie` ve Deblois*, Ce´ line Lefebvre*, Alain R. Bataille‡, Franc¸ois Robert‡, and Vincent Gigue` re*†§ *Molecular Oncology Group, Departments of Medicine and Oncology, McGill University Health Centre, Montreal, QC, Canada H3A 1A1; †Department of Biochemistry, McGill University, Montreal, QC, Canada H3G 1Y6; and ‡Laboratory of Chromatin and Genomic Expression, Institut de Recherches Cliniques de Montre´al, Montreal, QC, Canada H2W 1R7 Communicated by Ronald M. Evans, The Salk Institute for Biological Studies, La Jolla, CA, July 1, 2005 (received for review June 3, 2005) Nuclear receptors can activate diverse biological pathways within general absence of large scale functional data linking these putative a target cell in response to their cognate ligands, but how this binding sites with gene expression in specific cell types. compartmentalization is achieved at the level of gene regulation is Recently, chromatin immunoprecipitation (ChIP) has been used poorly understood. We used a genome-wide analysis of promoter in combination with promoter or genomic DNA microarrays to occupancy by the estrogen receptor ␣ (ER␣) in MCF-7 cells to identify loci recognized by transcription factors in a genome-wide investigate the molecular mechanisms underlying the action of manner in mammalian cells (20–24). This technology, termed 17-estradiol (E2) in controlling the growth of breast cancer cells. ChIP-on-chip or location analysis, can therefore be used to deter- We identified 153 promoters bound by ER␣ in the presence of E2. mine the global gene expression program that characterize the Motif-finding algorithms demonstrated that the estrogen re- action of a nuclear receptor in response to its natural ligand. -
A Genomic Approach to Study Down Syndrome and Cancer Inverse Comorbidity: Untangling the Chromosome 21
PERSPECTIVE ARTICLE published: 04 February 2015 doi: 10.3389/fphys.2015.00010 A genomic approach to study down syndrome and cancer inverse comorbidity: untangling the chromosome 21 Jaume Forés-Martos , Raimundo Cervera-Vidal , Enrique Chirivella , Alberto Ramos-Jarero and Joan Climent* Genomics and Systems Biology (InGSB) Lab, Oncology and Hematology Department, Biomedical Research Institute INCLIVA, Valencia, Spain Edited by: Down syndrome (DS), one of the most common birth defects and the most widespread Anaïs Baudot, Centre National de la genetic cause of intellectual disabilities, is caused by extra genetic material on Recherche Scientifique, France chromosome 21 (HSA21). The increased genomic dosage of trisomy 21 is thought to Reviewed by: be responsible for the distinct DS phenotypes, including an increased risk of developing Cristian Bellodi, Lund University, Sweden some types of childhood leukemia and germ cell tumors. Patients with DS, however, have Jian-Hua Mao, Lawrence Berkeley a strikingly lower incidence of many other solid tumors. We hypothesized that the third National Laboratory, USA copy of genes located in HSA21 may have an important role on the protective effect *Correspondence: that DS patients show against most types of solid tumors. Focusing on Copy Number Joan Climent, Genomics and Variation (CNV) array data, we have generated frequencies of deleted regions in HSA21 in Systems Biology (InGSB) Lab, Oncology and Hematology four different tumor types from which DS patients have been reported to be protected. Department, Biomedical Research We describe three different regions of deletion pointing to a set of candidate genes Institute INCLIVA, Avda Blasco that could explain the inverse comorbidity phenomenon between DS and solid tumors. -
Integrative Differential Expression and Gene Set Enrichment Analysis Using Summary Statistics for Scrna-Seq Studies
ARTICLE https://doi.org/10.1038/s41467-020-15298-6 OPEN Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies ✉ Ying Ma 1,7, Shiquan Sun 1,7, Xuequn Shang2, Evan T. Keller 3, Mengjie Chen 4,5 & Xiang Zhou 1,6 Differential expression (DE) analysis and gene set enrichment (GSE) analysis are commonly applied in single cell RNA sequencing (scRNA-seq) studies. Here, we develop an integrative 1234567890():,; and scalable computational method, iDEA, to perform joint DE and GSE analysis through a hierarchical Bayesian framework. By integrating DE and GSE analyses, iDEA can improve the power and consistency of DE analysis and the accuracy of GSE analysis. Importantly, iDEA uses only DE summary statistics as input, enabling effective data modeling through com- plementing and pairing with various existing DE methods. We illustrate the benefits of iDEA with extensive simulations. We also apply iDEA to analyze three scRNA-seq data sets, where iDEA achieves up to five-fold power gain over existing GSE methods and up to 64% power gain over existing DE methods. The power gain brought by iDEA allows us to identify many pathways that would not be identified by existing approaches in these data. 1 Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA. 2 School of Computer Science, Northwestern Polytechnical University, Xi’an, Shaanxi 710072, P.R. China. 3 Department of Urology, University of Michigan, Ann Arbor, MI 48109, USA. 4 Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA. 5 Section of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, IL 60637, USA. -
Colon Cancer and Protein Arginine Methyltransferase 1 Gene Expression
ANTICANCER RESEARCH 29: 1361-1366 (2009) Colon Cancer and Protein Arginine Methyltransferase 1 Gene Expression ALEXANDRA PAPADOKOSTOPOULOU1*, KONSTANTINA MATHIOUDAKI2*, ANDREAS SCORILAS3, DIMITRIOS XYNOPOULOS1, ALEXANDROS ARDAVANIS4, ELIAS KOUROUMALIS5 and MAROULIO TALIERI2 Departments of 1Gastroenterology and 2Cellular Physiology, G. Papanicolaou Research Center of Oncology, and 4Oncology, St. Savvas Hospital, Athens; 3Department of Biochemistry and Molecular Biology, Faculty of Biology, University of Athens; 5Department of Gastroenterology, University Hospital of Heraklion, Crete, Greece Abstract. Background: In this study, the possible relation synthesis. Some of these modifications are reversible, such of the expression pattern of arginine methyltransferase 1 and as protein phosphorylation reactions, whereas others are colon cancer progression is investigated. Materials and apparently irreversible and can effectively create new types Methods: Colon cancer samples as well as normal colon of amino acids to broaden the chemical diversity of samples were used to define the arginine methyltransferase polypeptides. In this latter group of modifications, a 1 expression by RT-PCR. The results were associated with number of methylation reactions is included (1). Protein clinical and histological parameters of the tissues. Results: methylation involves transfer of a methyl group from S- In colon cancer tissue, only PRMT1 variants v1 and v2 were adenosylmethionine to acceptor groups on substrate often expressed. Statistical significance for the -
PRMT1, Human Recombinant Protein (Active) HMT2, HRMT1L2, IR1B4 Catalog # Pbv10454r
10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 PRMT1, human recombinant protein (Active) HMT2, HRMT1L2, IR1B4 Catalog # PBV10454r Specification PRMT1, human recombinant protein PRMT1, human recombinant protein (Active) - (Active) - Background Product info PRMT1 methylate’s (mono & asymmetric Primary Accession Q99873 dimethylation) the guanidino nitrogens of Calculated MW 84.0 kDa KDa arginyl residues present in a glycine and arginine-rich domain (may methylate HNRNPA1 and histones) methylate’s SUPT5H. The PRMT1 PRMT1, human recombinant protein (Active) - Additional Info protein functions as a histone methyltransferase specific for H4. PRMT1 is an essential factor in oncogenesis and is a Gene ID 3276 potential novel therapeutic target in cancer. Gene Symbol ANM1 PRMT1-mediated methylation serves as a Other Names positive modulator of IR/IRS-1/PI3K pathway Protein arginine N-methyltransferase 1, and glucose uptake in skeletal muscle cells. Histone-arginine N-methyltransferase CAF1 is a new regulator of PRMT1-dependent PRMT1, Interferon receptor 1-bound protein 4, Histone-arginine N-methyltransferase arginine methylation. PRMT1 PRMT1, Interferon receptor 1-bound protein arginine-methylate’s MRE11 therefore it 4 regulates the activity of MRE11-RAD50-NBS1 complex during the intra-S-phase DNA damage Gene Source Human checkpoint response. PRMT1 plays a Source E. coli post-translationally part in regulating the Assay&Purity SDS-PAGE; ≥90% transcriptional activity. PRMT1 is found predominantly in the cytoplasm, though a Assay2&Purity2 HPLC; fraction of PRMT1 is located in the nucleus. Recombinant Yes PRMT1 Human Recombinant (a.a. 1-353) fused Sequence MHHHHHHMKI with His-MBP tag at N-terminus produced in EEGKLVIWIN E.Coli is a single, non-glycosylated, polypeptide GDKGYNGLAE chain containing 750 amino acids and having a VGKKFEKDTG molecular mass of 84 kDa. -
BTG3 Rabbit Polyclonal Antibody – TA323849 | Origene
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TA323849 BTG3 Rabbit Polyclonal Antibody Product data: Product Type: Primary Antibodies Applications: IHC, WB Recommended Dilution: ELISA: 1:1000-5000, WB: 1:200-1000, IHC: 1:25-100 Reactivity: Human, Mouse, Rat Host: Rabbit Isotype: IgG Clonality: Polyclonal Immunogen: Fusion protein corresponding to a region derived from 22-252 amino acids of human BTG family, member 3BTG family, member 3 Formulation: PBS pH7.3, 0.05% NaN3, 50% glycerol Concentration: lot specific Purification: Antigen affinity purification Conjugation: Unconjugated Storage: Store at -20°C as received. Stability: Stable for 12 months from date of receipt. Predicted Protein Size: 29 kDa Gene Name: BTG family member 3 Database Link: NP_001124386 Entrez Gene 12228 MouseEntrez Gene 54230 RatEntrez Gene 10950 Human Q14201 Background: The protein encoded by this gene is a member of the BTG/Tob family. This family has structurally related proteins that appear to have antiproliferative properties. This encoded protein might play a role in neurogenesis in the central nervous system. Two transcript variants encoding different isoforms have been found for this gene. Overexpression impairs serum-induced cell cycle progression from the G0/G1 to S phase. Synonyms: ANA; APRO4; TOB5; TOB55; TOFA This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 BTG3 Rabbit Polyclonal Antibody – TA323849 Product images: Predicted band size: 29 kDa. -
Original Article Long Noncoding RNA TOB1-AS1, an Epigenetically Silenced Gene, Functioned As a Novel Tumor Suppressor by Sponging Mir-27B in Cervical Cancer
Am J Cancer Res 2018;8(8):1483-1498 www.ajcr.us /ISSN:2156-6976/ajcr0079106 Original Article Long noncoding RNA TOB1-AS1, an epigenetically silenced gene, functioned as a novel tumor suppressor by sponging miR-27b in cervical cancer Jihang Yao1, Zhenghong Li1, Ziwei Yang2, Hui Xue1, Hua Chang1, Xue Zhang1, Tianren Li1, Kejun Guo1 Departments of 1Gynecology, 2Clinical Laboratory, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China Received April 21, 2018; Accepted July 9, 2018; Epub August 1, 2018; Published August 15, 2018 Abstract: Cervical cancer is one of the most common cancers in females, accounting for a majority of cancer- related deaths in worldwide. Long non-coding RNAs (lncRNAs) have been identified as critical regulators in many tumor-related biological processes. Thus, investigation into the function and mechanism of lncRNAs in the develop- ment of cervical cancer is very necessary. In this study, we found that the expression of TOB1-AS1 was significantly decreased in cervical cancer tissues compared with the adjacent normal tissues. The methylation status of TOB1- AS1-related CpG island was analyzed using methylation specific PCR and bisulfite sequencing analysis, revealing that the aberrant hypermethylation of TOB1-AS1-related CpG island was frequently observed in primary tumors and cervical cancer cells. The expression of TOB1-AS1 in cervical cancer cells could be reversed by demethylation agent treatment. Functionally, overexpression of TOB1-AS1 significantly inhibited cell proliferation, cell cycle progression, invasion and induced apoptosis, while knockdown of TOB1-AS1 exhibited the opposite effect. Furthermore, it was determined that TOB1-AS1 was able to bind and degrade the expression of miR-27b. -
A Genome-Wide Association Study of Calf Birth Weight in Holstein Cattle Using Single Nucleotide Polymorphisms and Phenotypes Predicted from Auxiliary Traits
J. Dairy Sci. 97 :3156–3172 http://dx.doi.org/ 10.3168/jds.2013-7409 © American Dairy Science Association®, 2014 . A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits J. B. Cole ,*1 B. Waurich ,† M. Wensch-Dorendorf ,† D. M. Bickhart ,* and H. H. Swalve † * Animal Improvement Programs Laboratory, Agricultural Research Service, USDA, Beltsville, MD 20705-2350 † Institute of Agricultural and Nutritional Sciences, Martin-Luther-University Halle-Wittenberg, Theodor-Lieser-Str. 11, D-06120 Halle / Saale, Germany ABSTRACT derived from one population are useful for identifying genes and gene networks associated with phenotypes Previous research has found that a quantitative trait that are not directly measured in a second population. locus exists affecting calving and conformation traits This approach will identify only genes associated with on Bos taurus autosome 18 that may be related to the traits used to construct the birth weight predictor, increased calf birth weights, which are not routinely and not loci that affect only birth weight. recorded in the United States. Birth weight data from Key words: birth weight , quantitative trait loci , se- large, intensively managed dairies in eastern Germany lection index , single nucleotide polymorphism with management systems similar to those commonly found in the United States were used to develop a selec- INTRODUCTION tion index predictor for predicted transmitting ability (PTA) of birth weight. The predictor included body Many studies have reported on QTL affecting calving depth, rump width, sire calving ease, sire gestation traits in several populations of Holstein cattle (Kühn et al., 2003; Schnabel et al., 2005; Holmberg and Ander- length, sire stillbirth, stature, and strength. -
Genome-Wide DNA Methylation Analysis on C-Reactive Protein Among Ghanaians Suggests Molecular Links to the Emerging Risk of Cardiovascular Diseases ✉ Felix P
www.nature.com/npjgenmed ARTICLE OPEN Genome-wide DNA methylation analysis on C-reactive protein among Ghanaians suggests molecular links to the emerging risk of cardiovascular diseases ✉ Felix P. Chilunga 1 , Peter Henneman2, Andrea Venema2, Karlijn A. C. Meeks 3, Ana Requena-Méndez4,5, Erik Beune1, Frank P. Mockenhaupt6, Liam Smeeth7, Silver Bahendeka8, Ina Danquah9, Kerstin Klipstein-Grobusch10,11, Adebowale Adeyemo 3, Marcel M.A.M Mannens2 and Charles Agyemang1 Molecular mechanisms at the intersection of inflammation and cardiovascular diseases (CVD) among Africans are still unknown. We performed an epigenome-wide association study to identify loci associated with serum C-reactive protein (marker of inflammation) among Ghanaians and further assessed whether differentially methylated positions (DMPs) were linked to CVD in previous reports, or to estimated CVD risk in the same population. We used the Illumina Infinium® HumanMethylation450 BeadChip to obtain DNAm profiles of blood samples in 589 Ghanaians from the RODAM study (without acute infections, not taking anti-inflammatory medications, CRP levels < 40 mg/L). We then used linear models to identify DMPs associated with CRP concentrations. Post-hoc, we evaluated associations of identified DMPs with elevated CVD risk estimated via ASCVD risk score. We also performed subset analyses at CRP levels ≤10 mg/L and replication analyses on candidate probes. Finally, we assessed for biological relevance of our findings in public databases. We subsequently identified 14 novel DMPs associated with CRP. In post-hoc evaluations, we found 1234567890():,; that DMPs in PC, BTG4 and PADI1 showed trends of associations with estimated CVD risk, we identified a separate DMP in MORC2 that was associated with CRP levels ≤10 mg/L, and we successfully replicated 65 (24%) of previously reported DMPs. -
Inactivation of Erk1 and Erk2 Disrupts Cortical
INACTIVATION OF ERK1 AND ERK2 DISRUPTS CORTICAL PROGENITOR PROLIFERATION LEADING TO ABNORMAL CYTOARCHITECTURE, CIRCUITRY AND BEHAVIOR, MODELING HUMAN NCFC AND RELATED SYNDROMES. by JOANNA PUCILOWSKA Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Dissertation Advisor: Dr. Gary E. Landreth Department of Neurosciences CASE WESTERN RESERVE UNIVERSITY August 2012 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of Joanna Pucilowska candidate for the PhD degree*. (signed) Robert Miller (chair of the committee) Gary Landreth Jerry Silver Stephen Maricich (date) 5/29/2012 *We also certify that written approval has been obtained for any proprietary material contained within. 2 TABLE OF CONTENTS List of figures……...……………………………………………………………….….6 ABSTRACT…...………………………………………………………………….…..9 CHAPTER 1: INTRODUCTION………………………………………………………….11 MAP KINASE Signaling Pathway………………………………………………...11 MAPK Specificity: The Right Place at the Right Time………………………..…16 ERKs and Isoform Specificity………………..…………………………………….23 ERKs in Learning and Memory………………………..………………………….26 ERKs and their FGF Ligands………………………..…………………………….28 CORTICAL DEVELOPMENT: Forebrain Regionalization and Morphogenesis………..…………………31 The Role of Cell Cycle in Corticogenesis……..…………...………………33 ERKs and the Cell Cycle Progression…………………..…………………36 Progenitor Proliferation and Neurogenesis………………..……………...39 Migration…………………..………………………………………………..45 Gliogenesis…………………………………………………………..………47 Differentiation……………………………………………………..………..48 -
The PRMT1 Gene Expression Pattern in Colon Cancer
British Journal of Cancer (2008) 99, 2094 – 2099 & 2008 Cancer Research UK All rights reserved 0007 – 0920/08 $32.00 www.bjcancer.com The PRMT1 gene expression pattern in colon cancer 1,5 2,5 3 2 4 ,1 K Mathioudaki , A Papadokostopoulou , A Scorilas , D Xynopoulos , N Agnanti and M Talieri* 1 Department of Cellular Physiology, ‘G Papanicolaou’ Research Center of Oncology, ‘Saint Savvas’ Hospital, 171 Alexandras Avenue, Athens 11522, Greece; 2Department of Gastroenterology, ‘Saint Savvas’ Hospital, 171 Alexandras Avenue, Athens 11522, Greece; 3Department of Biochemistry and Molecular Biology, Faculty of Biology, University of Athens, Panepistimioupoli, Athens 15711, Greece; 4Department of Pathology, School of Medicine, University of Ioannina, Ioannina 45110, Greece The methylation of arginine has been implicated in many cellular processes, such as regulation of transcription, mRNA splicing, RNA metabolism and transport. The enzymes responsible for this modification are the protein arginine methyltransferases. The most abundant methyltransferase in human cells is protein arginine methyltransferase 1. Methylation processes appear to interfere in the emergence of several diseases, including cancer. During our study, we examined the expression pattern of protein arginine methyltransferase 1 gene in colon cancer patients. The emerging results showed that the expression of one of the gene variants is associated with statistical significant probability to clinical and histological parameters, such as nodal status and stage. This is a first attempt to acquire an insight on the possible relation of the expression pattern of protein arginine methyltransferase 1 and colon cancer progression. British Journal of Cancer (2008) 99, 2094 – 2099. doi:10.1038/sj.bjc.6604807 www.bjcancer.com & 2008 Cancer Research UK Keywords: protein arginine methyltransferase; PRMT1; colon cancer; prognosis Colon cancer is one of the most dominant types of cancer in et al, 2005b; Cook et al, 2006) and can be classified into three Western industrialised countries.