<<

USDA-NRI Project: R. solanacearum 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Ralstonia solanacearum race 3 biovar 2 Originalwebpage(seelink attheendofthedocument)

Author : PatriceG.ChampoiseauofUniversityofFlorida Reviewers : CaitilynAllenofUniversityofWisconsin; JeffreyB.Jones ,CarrieHarmonandTimurM.MomolofUniversityofFlorida Publication date : September1 2,2008 Supported by : TheUnitedStatesDepartmentofAgriculture NationalResearch InitiativeProgram(2007 2010)

Seedefinitionsofredcoloredwords intheglossaryattheendofthisdocument

Ralstonia solanacearum race3biovar2istheplant bacterium thatcausesbrownrot(orbacterialwilt)of, Southernwiltofgeranium,andbacterialwiltof. R. solanacearum race3biovar2occursinhighlandsinthetropics and in subtropical and some warmtemperate areas throughouttheworld.IthasalsooccurredincoldtemperateregionsinEurope,whereseveraloutbreaksofbrownrotofpotato havebeenreportedinthelast30years.Ithasbeenreportedinmorethan30countriesandalmostallcontinents. IntheUnitedStates,severalintroductionsof R. solanacearum race3biovar2havealreadyoccurredasaresultofimportation ofinfestedgeraniumcuttingsfromoffshoreproductionsites,butthepathogenwasapparentlyeradicated.However,because of the risk of its possible reintroduction through importation of infected plant material, and its potential to affect potato productionincoldtemperateareasinthenorthernUnitedStates, R. solanacearum race3biovar2isconsideredaserious threattotheUnitedStatespotatoindustry.ItisofquarantineimportanceandhasbeenlistedasaSelectAgent plant pathogenundertheAgriculturalActof2002.

Symptoms and signs

Inpotatoandtomato, symptoms inducedby R. solanacearum race3biovar2areverysimilar.Attheearlystagesofdiseases, thefirstvisiblesymptomsusuallyappearonfoliageofplants.Thesesymptomsconsistofwiltingoftheyoungestleavesatthe endsofthebranchesduringthehottestpartoftheday( Photo 1a and1b ).

Photo 1 a. Symptom of brown rot of potato caused by R. Photo 1b .Symptomofbacterialwiltoftomatocausedby R. solanacearum showingwiltingofyoungestleavesofplant. solanacearum showing wilting of leaves at the end of plant (Photo courtesy of D.P. Weingartner – IFAS, University of Florida, branch. Hastings) (Photo courtesy of Clemson University - USDA Cooperative Extension Slide Series, Bugwood.org)

Ralstonia solanacearum race 3 biovar 2, Page 1

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Atthisstage,onlyoneorhalfaleafletmaywilt,andplantsmayappeartorecoveratnight,whenthetemperaturesarecooler. Asthediseasedevelopsunderfavorableconditions,theentireplantmaywiltquicklyanddesiccate,althoughdriedleaves remaingreen,leadingtogeneralwiltingandyellowingoffoliageandeventuallyplantdeath.Anothercommonsymptomthat canbeassociatedwithbacterialwiltinthefieldisthestuntingofplants( Photo 2a and 2b ).Thesesymptomsmayappearat anystageofplantgrowth.

Photo 2a . Symptom of brown rot of potato caused by R. Photo 2 b. Symptom of bacterial wilt of tomato caused by R. solanacearum showingwiltingandstuntingofplant. solanacearum showingwiltingoffoliageandstuntingofplant. (Photo courtesy of David Thurston, Cornell University) (Photo courtesy of C. Allen, University of Wisconsin) In young stems, infected vascular bundles may become visible as long, narrow, dark brownstreaks.Inyoung,succulentplantsofhighlysusceptiblevarieties,collapseofthe stemmayalsobeobserved.(Photo 3 ).

Photo 3. Symptomofbacterialwiltoftomatocausedby R. solanacearum. showingcollapseofyoungstemafterartificialinoculationoftheplant (Photo courtesy of P. Champoiseau, University of Florida) In well establishedinfections,crosssectionsofstemsor stolons may revealbrowndiscolorationofinfectedtissues(Photo 4).

Photo 4.Browndiscolorationofstemtissuescausedby R. solanacearum (Photo courtesy of Clemson University - USDA Cooperative Extension Slide Series,Bugwood.org)

Ralstonia solanacearum race 3 biovar 2, Page 2

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Inpotato,brownrotsymptomsmaybepresentintubersatthelaterstagesofdisease.Crosssectionofinfectedpotatotubers mayrevealagreybrowndiscolorationofvasculartissues,alsocalledavascularring(Photo 5 ).Asinfectionprogresses,the discolorationmayextendintothepithorcortexofthetuber.Amilkywhitestickyexudate(ooze),whichindicatesthepresence ofcells,mightalsobeobservedinfreshlycutsectionsofinfectedtubers(Photo 5 ). Bacterialoozemayalsobevisibleattheeyesoratthepointwherethestolonattachestothetuber(Photo 6 ).Thesesignsor symptomsmaynotbevisibleearlyindiseasedevelopment.

Photo 5.Grey browndiscolorationofvasculartissuesandbacterial Photo 6. Bacterial ooze exuding from eye of potato tuber oozeinpotatotuberinfectedby R. solanacearum. infectedby R. solanacearum . (Photo courtesy of K. Tsuchiya) (Photo courtesy of Central Science Laboratory, Harpenden Archive, British Crown, Bugwood.org) Ingeranium,symptomsofSouthernwiltusuallybeginwithabnormal chlorosis andwiltingofthelowerleaves.Leavesmay alsoshowabnormalupwardcurlingattheirmarginswhichisverycharacteristicofthedisease( Photo 7). Atthisstageofdisease,plantsmayappeartorecoveratnight,whenthetemperaturesarecooler.Underfavorableconditions, the disease develops rapidly and wilting may spreaduptheplantfromolderleavestonewerones.Wilted leaves often become chlorotic then brown necrotic inwedgeshapedpatternsthatexpandtowardstheleafmargins.Theleafmargins themselvesmayalsobecomechloroticthennecrotic,andthewholeplantmaydesiccateanddie( Photo 8).

Photo 7 .InitialsymptomsofSouthernwiltofgeraniumcaused Photo 8.SymptomsofSouthernwiltofgeraniumcausedby R. by R. solanacearum showing wilting and upward curling of solanacearum race 3 biovar 2 showing drying and brown leaves. necrosisonleaves. (Photo courtesy of D. Norman, Mid-Florida Research and Education (Photo courtesy of the Wisconsin Department of Agriculture, Trade Center, IFAS, University of Florida) and Consumer Protection)

Ralstonia solanacearum race 3 biovar 2, Page 3

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Atlatestagesofdisease,collapseofthestemmayalsobeobserved( Photo 9 ).Stemsandrootsmayshowbrownvascular discoloration,blackenandeventuallybecomenecrotic(Photo 9 , Photo 10 ).

Photo 9.LatesymptomsofSouthernwiltofgeraniumcaused Photo 10 .LatesymptomsofSouthernwiltofgeraniumcaused by R. solanacearum race3biovar2showingblackeningand by R. solanacearum showingrootblackening. collapseofstem. (Photo courtesy of Margery Daughtrey, Cornell University) (Photo courtesy of D. Norman, Mid-Florida Research and Education Center, IFAS, University of Florida) Symptomexpressionisfavoredbyhightemperatures(8595°F/2935°C)andsymptomsofthediseasemayprogressrapidly afterinfection.However,underfavorableconditions,symptomlessplantsmayremainlatentlyinfectedforextendedperiodsof time.Afterinfectionthepathogenmaysurviveinandbespreadfromtheinfectedplant. Acommonsignofbacterialwiltobservedatthesurfaceoffreshly cut sections from severely infected stems is a sticky, milkywhite exudate,whichindicatesthepresenceofdensemassesofbacterial cells in infected vascular bundles, and particularly in the (Photo 11 ).

Photo 11.Bacterialoozefromfreshlycutsectionofageraniumstem infectedby R. solanacearum. (Photo courtesy of M. Daughtrey, Cornell University) Anothercommondiagnosticsignofdiseasesisobservedwhenthecutstemsectionsare placedinclearwaterasshownin Photo 12 .Itconsistsofaviscouswhitespontaneous slimestreamingfromthecutendofthestem.Thisstreaming represents the bacteri al oozeexudingfromthecutendsofcolonizedvascularbundles(Photo 12 ). This“stemstreaming”testiseasytoconductandcanbeusedasavaluablediagnostic toolforquickdetectionofbrownrotinthefield.

Photo 12.Bacterialstreaminginclearwaterfromstemcrosssectionof plantinfectedby R. solanacearum . (Photo courtesy of University of Georgia, Extension)

Ralstonia solanacearum race 3 biovar 2, Page 4

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

R. solanacearum race3biovar2alsoinfectsweedsandnativeplants,especiallymembersofthe Solanaceae .Inweedhosts, wiltsymptomsarerarelyobservedundernaturalconditionsunlesssoiltemperaturesexceed77ºF(25ºC)orinoculumlevels are extremely high. When wilting does occur, the symptoms are as described for tomato. (woody nightshade orbittersweet) plants growing in water may show internal discoloration ofvascular tissues on thestem base without any obvious wilting. Solanum dulcamara has been described as an important weed of R. solanacearum in England(seethecausalsection).

Causal organism

Ralstonia solanacearum (Smith1896)Yabuuchietal.1996,isa Gramnegative ,rodshaped,strictly aerobic bacteriumthatis 0.50.7x1.52.0minsize.Itisverysensitivetodesiccationandisinhibitedinculturebylowconcentrations(2%)ofsodium chloride(NaCl).Formoststrains,theoptimalgrowthtemperatureisbetween82and90°F(28and32°C);howeversome strainshavealoweroptimalgrowthtemperatureof80.5°F(27°C). Liquidandsolid(agar)growthmedia arecommonlyusedforcultureofthebacterium.Onsolidagarmedium,individual bacterialcolonies areusuallyvisibleafter36to48hoursofgrowthat82.4°F(28°C),andtwomaincolonytypesdifferingin morphologycanbedistinguished:coloniesofthenormalor virulent typethatarewhiteorcreamcolored,irregularlyround, fluidal,andopaque;andcoloniesofthemutantor nonvirulenttypethatareuniformlyround,smaller, and butyrous (dry) (Photo 13 ).

Photo 13 .Virulent(bottom)andnon virulent(top)coloniesof Photo 14 .Virulentcoloniesof R. solanacearum onTZCagar R. solanacearum onCPGagargrowthmedium. medium. (Photo courtesy of P. Champoiseau, University of Florida) (Photo courtsey of P. Champoiseau, University of Florida) This shift from virulent to nonvirulent bacterial cells occurs during storage or under oxygen stress in liquid media. A tetrazoliumchloride(TZC)mediumwasdevelopedtodifferentiatebetweenthetwocolonytypes,onwhichvirulentcolonies appear white with pink centers and nonvirulent colonies appear dark red ( Photo 14 ). A semiselective medium , called modified SMSA medium, has been developed for detection of R. solanacearum in water and soil samples, and inplant extracts.Onthismedium,typicalbacterialcoloniesappearfluidal,irregularinshape,andwhitewithpinkcentersafter2to5 daysincubationat82.4ºF(28ºC)(seethedetectionandidentificationsection). For long term culture storage, R. solanacearum willremainviableforseveralyearsatroomtemperatureinsterilized tap, distilledordeionizedwater.

Ralstonia solanacearum race 3 biovar 2, Page 5

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Many strains ofR. solanacearum havebeenidentifiedandcharacterizedworldwide,revealingsignificant variability withinthe . R. solanacearum isthereforeconsidereda“ speciescomplex ”.Basedonvariabilityinhostrangeandinabilityto utilizeseveral carbohydratesubstrates , R. solanacearum wasinitiallysubdividedinto races and biovars .Sofar,fiveracesand fivebiovarshavebeenidentifiedwithinthespecies( Table 1 ),butthisoldclassificationsystemisunsatisfactorybecauseitis notpredictiveandsomegroups(e.g.race1)containverylargevariation. Table 1. Characteristicsofracesandtheirrelationshiptobiovarsof R. solanacearum (fromDennyandHayward, 2001;Daughtrey,2003). Race Primary hosts Geographical distribution Biovar 1 Wide(,tomato,solanceousandnonsolanaceous Asia,, 3,4, weeds,diploidbananas,groundnut,potato,pepper, Americas 1 ,,,strawberry,geranium, Eucalyptus,otherplants…) 2 Triploidbananas,other spp. Caribbean,Brazil,Philippines 1 3 Potatoandtomato WorldwideexceptUnitedStates 2(or2A) * andCanada 4 Ginger Australia,China,Hawaii,, 4, Japan,Mauritius,SouthAsia Unknown India 3 5 Mulberrytree China 5 * Typicalrace3strains aresometimesreferredtoasbiovar2A.Newrace3strainsfromtheAmazonbasinhavebeenplacedina newbiovar,designedas2TorN2(theirrelationtoracesisunclear). Asia Recently,anewclassificationschemehasbeendescribedforstrains Phylotype I

14 13 of R. solanacearum ,basedon variationofDNAsequences .Twenty 16 12 three sequevars and four phylotypes were identified within the 18 Indonesia Africa 11 species that broadly reflects the ancestral relationships and 10 Phylotype III geographicaloriginsofthestrains(Figure 1 ). 19 20 21 9 22 Phylotype IV 8

23

Americas

CIP223 CIP10 7 2 1 6 NCPPB3987 3 Figure 1.Classificationandgeographicoriginsof R. solanacearum strains 4 5 basedonsequenceanalysisof endoglucanase genesequences. Phylotype II

Numbersindicatesequevars(1to23) 0.01 (From Fegan and Prior, 2005) Ralstonia solanacearum race3biovar2strainsbelongtophylotypeIIandsequevars1and2. Initiallydescribedaspathogeniconpotatoandtomato, R. solanacearum race3biovar2wasshowntoalsoinfectandinduce symptomsoneggplant,geranium,andpepper.Othersolanaceousandnonsolanaceousweeds,suchasthebittersweetor woodynightshade( Solanum dulcamara )(seethediseasecycleandepidemiologysectionforillustration),areconsideredas alternatehosts.Mostofthesealternatehostsremainlatentlyinfectedandmaynotshowanydiseasesymptoms,buttheycan beepidemiologicallyimportantasinoculumsourcesandrefuges. Sometimesreferredasthe‘coldtolerant’race, R. solanacearum race3biovar2originatedintheAndesandwasprobably disseminatedworldwideonpotatotubers.Itisnow knowntooccurinthehighlandsofthetropicsandin subtropical and temperateareasthroughouttheworld,exceptinNorthAmerica.

Ralstonia solanacearum race 3 biovar 2, Page 6

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Disease cycle and epidemiology

R. solanacearum race3biovar2isasoilborneandwaterbornepathogen;thebacteriumcansurviveanddisperseforvarious periodsoftimeininfestedsoilorwater,formingareservoirforsourceofinoculumforthepathogen.Itisnotairbornealthough therewassomeevidenceofsurvivalofthebacteriumontheoutsideoftheplant(epiphyte)underconditionsofhighrelative humidity. The bacterium can survive for days to years in water, wet soils or deep soil layers (>29.5 in / >75 cm), depending on temperatureconditions.Inaquatic,factorssuchaspH,saltlevel,surfacesprovidedbyparticulatematter,andthe presenceofcompeting,antagonisticorparasiticcanaffectbacterialsurvival.Soilmoisturecontent,soiltypeand plantmaterialcontentinsoilalsocanplayacriticalroleinitssurvivalinthis.Atlowtemperatures(<39.2°F/<4°C), bacterialpopulationdensitiesfallrapidlybutthebacteriastillcansurvive,ofteninaphysiologicallatentstate. Innaturalhabitats, R. solanacerum race3biovar2cansurviveduringthewinterinsemiaquaticweeds,inplantdebrisorin therhizophereofnonhostplantsthatactasreservoirsforthepathogenandreleasebacteriawhentemperaturesstartto increaseafterwinter. R. solanacearum primarily infects host plants through the roots. It penetrates the host through wounds at the points of emergenceoflateralrootsorthroughrootdamagethatmaybecausedbysoilborne,suchasthe rootknot ,orbyhandling.Thesynergisticinteractionbetweentherootknotnematodeand R. solanacearum onaof hostsiswidelyrecognized.Itcanalsopenetrateintoplantsbywayofsteminjuriesfrominsects,handlingortools.Once infectionhasoccurredintheroots,bacteriawillcolonizetheplantthroughthexyleminthevascularbundles,aprocesswhich isacceleratedbyhighertemperatures. R. solanacearum race3biovar2ismostsevereonplantsbetween7595ºF(2435°C) (optimaltemperatureof80.5ºF27°C)anddecreasesinwhentemperaturesexceed95ºF(35°C)orfallbelow53.6ºF (12°C). Because of vegetative propagation , infected potato seedtubersandinfectedgeranium cuttings can play a major role in disseminationofthebacterium,particularlyduringlatentinfections.Thepathogenisnotknowntobedisseminatedthrough tomatoseeds.Planttoplantcontaminationcanoccurwhenbacteriamovefromrootsofinfectedplantsorweedstorootsof nearbyhealthyplants.Thepathogencanbespreadfrominfestedtohealthyfieldsbysoiltransferonmachineryandsurface runoffwaterafterirrigationorrainfall.Italso canbedisseminatedfrominfectedpondsorriversto healthy fields through waterways.InEurope,thesemiaquaticweed Solanum dulcamara (bittersweetorclimbingnightshade)( Photo 15 )infected with R. solanacearum race3biovar2wasshowntoplayamajorroleinpropagationofthepathogenbyreleasingbacteriainto irrigation water supplies. Recent outbreaks of brown rot of potato in the U. K. have been associated with the use of contaminatedriverwaterforirrigation.

Photo 10. Bittersweetorwoodynightshade( Solanum dulcamara ). Keyfeaturesforidentification. (Photo courtesy of J. Elphinstone, Central Science Laboratory, York, UK, Crown Copyright)

Ralstonia solanacearum race 3 biovar 2, Page 7

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Ingreenhouseproduction, ebbandflowsubirrigation systemsareconductivetobacterialdisseminationandassucharea majorrisk.

Detection and identification

Detection and identification of R. solanacearum from either symptomatic or asymptomatic plants and from water or soil samplesispossiblewithseveralmicrobiologicalandmolecularmethods.Abatteryofcomplementaryteststhatdifferintheir sensitivityand/orspecificityshouldbeusedforfieldorlaboratoryanalysesforunambiguousidentificationofbacteriatogenus, species,raceandbiovar. Fulldescriptionofproceduresandschemesfor R. solanacearum race3biovar2detectionandidentificationisavailableinthe EuropeanUnionCouncilDirective9857EC . Atspecieslevel,anumberofrapidscreeningtestscanfacilitateearlydetectionandidentification of R. solanacearum in potentially infected plants or contaminated soil and water samples. However, these tests cannot be used to identify the organismtoraceorbiovar. The“stemstreamingtest”mightindicatethepresenceofbacteriainhighlyinfectedstemsofusuallysymptomaticpotato, geraniumandtomato.Bacterialooze(whitespontaneousstreamingofbacterialslime)mightbeobservedafewminutesafter placingcrosssectionsofstemsintoclearwater,indicatinginfestationofvascularbundlesbythebacteria(seethesymptoms andsignssection–Photo12). Acommonwayofconfirmingthepresenceofthebacteriumindiseasedtissueistoisolate thebacteriumonamediumthatfavorsbacterialgrowth. R. solanacearum is relatively easytoisolatefromwaterandsoilsamples,andplantextracts,usingasemiselective medium , called modified SMSA medium. Typical bacterial colonies appear fluidal, irregular in shape, and white with pink centers after 2 to 5 days incubat ion at 82.4ºF (28°C)( Photo 17 ).

Severalothersolid(agar)orliquid(broth)mediahavebeendevelopedforsemiselective detection of R. solanacearum. Plating tests are easy to use and have very good sensitivity.

Photo 17.Appearanceofvirulentcoloniesof R. solanacearum onmodifiedSMSAmedium. (Photo courtsey of P. Champoiseau, University of Florida) Immunodiagnosticassays canbeusedforrapididentificationof R. solanacearum frombacterialculturesorsymptomaticplant tissueextracts.Thesetestsarebasedontheabilityofspecific antibodies torecognizeandlinkto antigens ,specificto R. solanacearum .Quickserologicaltestscanbeusedinthefieldorgreenhouseforearlyidentificationofthepathogen.Several quickteststhatwereevaluatedbytheUSDAAPHISPPQCPHSTLaboratoryareavailablecommercially( Photo 18 ).

Photo 18.Resultofaquickserologicaltestshowingnegative()and positive(+)detectionof R. solanacearum . (Photo courtsey of P. Champoiseau, University of Florida)

Ralstonia solanacearum race 3 biovar 2, Page 8

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Serologicalmethodsaregenerallyquickandreliablebutsufferfromproblemswithspecificity,sensitivityorboth.Additionally, theydonotdistinguishlivecellsfromdeadcells. Severalotherteststhatrequireminimumequipmentcanbeusedforrapididentificationof R. solanacearum inthelaboratory. Some tests based on differential total fatty acid bacterial composition (Fatty Acid Methyl Ester analysis) and differential utilizationofseveralcarbonsourcesanalysis(BIOLOG™kits)areavailablecommerciallyandcouldbeusedtoidentifypure culturesof R. solanacearum ,buttheseareexpensiveandrequiretechnicalexpertise.SerologicalmethodssuchasELISA (EnzymeLinkedImmunoSorbentAssay)andimmunofluorescencearerelativelyinexpensive,easy,fairlyfast, andtolerate foreignmaterialinthesample.Anumberof R. solanacearum specific nucleicacid basedmethodsthatusethe polymerase chainreaction(PCR)amplification candetectbothlivinganddeadcellsandaremorespecificandsensitivethanserological approaches. Sensitivityofthesemethodsincomplexsamplesubstratescanbesignificantlyimprovedbyusingenrichmenttechniques(in semiselectivegrowthmedium)orDNApurificationmethodspriortoserologicaldetectionorPCRamplification. Pathogenicity tests should be performed asa complementary confirmation for identification of suspect R. solanacearum . Thesetestsconsistofassessmentofvirulenceonpotato,tomatoortobaccoplants. Atthesubspecieslevel,phylotypedeterminationof R. solanacearum canbeachievedby multiplexPCR amplificationwith differentphylotypespecificprimercombinations.Severalmethodscanbeusedforcharacterization,includingwholecell protein profile analysis, genomic fingerprinting or sequence analysis of selected genomic sequences. Most of these techniques are highly reproducible, but require fairly expensive equipment and expertise. The phylotype multiplex PCR followedbysequencingofaninternalfragmentoftheendoglucanase(egl)genewilldeterminephylotypeandsequevarofa strain(seethecausalorganismsectionformoredetails). Abiovartestisusedforbiovardeterminationof R. solanacearum . The test is based on the ability of strains of R. solanacearum to differentially produce acid from several carbohydrate sources, includingdisaccharidesandsugaralcohols(Figure 19 ).

The test is easy, inexpensive and reproducible. Nevertheless, it shouldonlybeusedonceastrainhasalreadybeenidentifiedas R. solanacearum usingothermethods.

Photo 19.Resultofabiovartestshowingpositive(+)andnegative() utilizationofsorbitolbyseveralstrainsof R. solanacearum . (Photo courtsey of P. Champoiseau, University of Florida) Racedeterminationisnotgenerallypossiblebecause R. solanacearum strainsusuallyhavenumeroushostsanddonothave racespecificityonplanthosts.Thisiswhytheracesubclassificationsystemhasfallenoutoffavorwithscientists, althoughitstillhasregulatorymeaningbecauseofquarantineruleswrittenfor“race3biovar2”. It is important to understand that unequivocal identification of R. solanacearum race 3 biovar 2 must rely on at least two distinct methods, including the biovar test and one of the nucleic acid-based tests that use PCR to amplify one of several specific DNA fragments.

Ralstonia solanacearum race 3 biovar 2, Page 9

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Currently,forregulatorypurposes,theonlylaboratorywithproperregistrationsforultimatedeterminationofraceandbiovarof R. solanacearum race 3 biovar 2 is the USDAAPHISPPQ National Plant Germplasm and Biotechnology Laboratory in Beltsville,M.D. USDAAPHISPPQCPHST BARCEast,Bldg.580 PowderMillRoad Beltsville,MD20705 Phonenumber:3015047100 Faxnumber:3015048539

Management

Somelevelofbacterialwiltcontrolonpotatoandtomatoispossibleusingresistant .However,resistanceinthese hostplantsmayvaryacrosslocations,accordingtovariationintemperature.Similarly,theuseofantibiotics(streptomycin, ampicillin,tetracyclineandpenicillin)andsoilfumigationhasshownlittleefficacyon R. solanacearum . Asaconsequence,thereareanumberofalternativemethodsforcontrolof R. solanacearum race3biovar2.Inregions where the disease is endemic , cultural control methods appear to be effective in some conditions for reducing bacterial populationsof R. solanacearum andsubsequent diseaseincidence :croprotationcanbeparticularlyeffectiveforcontrolling R. solanacearum race3biovar2,sincethepathogenexhibitsafairlynarrowhostrange.Thelengthoftimeforcroprotationcan vary,butrotationsofatleasttwotofiveyearsinvolvingseveraldifferentnonhostcropsmaybeusedforsignificantdisease reduction;intercroppingcanbeeffectiveforsmallfarmersascultivationofbeansormaizewasshowntosignificantlyreduce diseaseincidence;controlofweeds,whichhavethepotentialtoserveasinoculumreservoirs,inconjunctionwithcroprotation canalsobeeffectiveinreducingdiseaseincidence.Controlofrootknotnematodepopulationsandculturalpracticesthat minimizerootdamagecanalsoreducediseaseseverity. Someotherculturalstrategiesthatmightbeusedtoreducebacterialpopulationsof R. solanacearum race3biovar2or decreasediseaseincidenceondifferenthostsinclude:plantinginuninfestedproductionsites,removaloflongtermsurvival sites,selectionofappropriateplantingandharvesttimes,deepplowingofcropresidues,ensuringsatisfactorysoildrainage, orearlyandlateseasonirrigationmanagement. Chemicaltreatmentbysoilfumigationhasbeenusedtocontrolsoilinfestationby R. solanacearum race3biovar2,butthe methodisenvironmentallydestructive,expensive,anddifficulttoapply,andresultsareoftenunsatisfactory.Severaldifferent plantessentialoilsweresuccessfullyusedassoilfumigantstoreducebacterialpopulationsof R. solanacearum intomato. Applicationofstablebleachingpowderinconjunctionwithdeepploughingcanalsobeusedasitshowedsignificantreduction inbacterialpopulationsofthepathogeningreenhouseandfieldtrialsinseveralgeographicareas.However,soildisinfection appearstobesoildependentandnotuniversallyapplicable.ModificationofsoilpHbyuseofacidifiednutrientsolutionora combinationoforganicamendmentandfertilizerswasshowntobeveryeffectiveinreducingbacterialwiltdiseasesondiverse hosts.Heattreatmentbysolarizationwhenusedin combinationwithothercontrolstrategiesisanother method that was shown to reduce R. solanacearum populations in soil. Efficacy of heat treatment on control of the bacterium may vary accordingtosoilmoisturecontent,heattemperatureanddurationofheatapplication.Applicationofplantresistanceinducers , suchasacibenzolarSmethyl,mightbeusedtoenhancehostresistanceagainst R. solanacearum race3biovar2,asitwas recentlyshowntoworkforbroadhostrangestrainsofthepathogen.Ongeranium,applicationofphosphorous acid asa drenchwasrecentlyshowntoprotecthostplantsfrominfectionbythebacterium.Finally,useof suppressivesoils wasshown toslowinfectionoftomatoseedlingsbyR.solanacearumandreducebacterialwiltincidenceinnurseries. Initialstudieson biologicalcontrol ofR . solanacearum gavepromisingresults.Theuseofnumerousdiversebacterialstrains antagonisticto R. solanacearum ascontrolagentsgavepositiveresultsinthegreenhouseorinstrictlycontrolledfieldtests. Similarly,antagoniststhatarecloselyrelatedtoorderivedfromthewildtypeof R. solanacearum itself,suchasspontaneous

Ralstonia solanacearum race 3 biovar 2, Page 10

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules orgeneticallyengineeredavirulentmutantsofthebacterium,wereshowntoconferprotectionagainstbacterialwiltdiseaseon potatoandtomatoundergreenhouseconditions.Suchantagonistsmaybeabletocolonizeandsurviveasymptomaticallyon thehostwithoutreducingyield.Theuseofthesestrainsasantagonistagentsforcontrolof R. solanacearum undertruefield conditionshastobeevaluated. IntheUnitedStatesandotherareaswhere R. solanacearum race3biovar2isnotknowntobeestablished,thefirststrategy istopreventintroductionandinadvertentspreadofthepathogen.Thiscanbeachievedbytheestablishmentofexclusionary andsanitarypractices,alongwithgovernmentalregulations. A“NewPestResponseGuidelines ” (USDAAPHISPPQ)anda" Recoveryplanfor Ralstonia solanacearum race3biovar 2" (USDAARS)givethemostaccurateavailableinformationfordetection,control,containment,anderadicationof R. solanacearum race3biovar2. Inareaswherethepathogenispresentbutnotyetestablishedeverywhere,itiscriticallyimportanttoobservegoodcultural sanitation practices to keep uninfested areas clean. These include planting only certified diseasefree seed potatoes or cuttings,disinfestingallequipmentbeforemovingfromfieldtofield,andneverusingsurfacewaterforirrigation.Evenwhere R. solanacearum race3biovar2ispresentinsoils(asinmanypartsoftheAfricanhighlands),useofdiseasefreeseed potatoes can significantly reduce disease incidence and allow growers to harvest a profitable crop. Effective health management of brown rot ofpotatoes , Southern wilt of geranium and bacterial wilt of tomato causedby R. solanacearum race3biovar2willbepossiblethroughestablishmentofspecificstrategiesandpracticesadaptedforeachof thesediseases. A“ Minimumsanitationprotocolsforoffshoregeraniumscuttingproduction ” documentwasdevelopedbyAPHISPPQin 2004tobeusedbyoffshoregeraniumsuppliers.Itdefinesminimumstandardsandrequirementsforgreenhousestructure andmaterial.

Regulation

In the United States, R. solanacearum race 3 biovar 2 is listed as a Select Agent , a designation under the Plant ProtectionAct(7CFRPart330)andtheAgriculturalBioterrorismProtectionActof2002(7CFRPart331)thatdefinesthe possession,use,andtransferofSelectAgentsandToxins. StatediagnosticlaboratoriesreceivingsuspectinfectedplantmaterialorculturesarerequiredtohavepermitsfromtheUSDA APHISPlantProtectionandQuarantine(consultthePPQpermitwebpage formoredetails).Laboratoriespossessing,using, ortransferringSelectAgentssuchas R. solanacearum race3biovar2arerequiredtoberegisteredwiththePPQ.Diagnostic laboratoriesthatarenotregisteredandidentify R. solanacearum race3biovar2,orreceivepositivefeedbackfromtheUSDA Laboratory,fromasuspectsamplearerequiredtoimmediatelynotifytheAPHISSelectAgentProgramwithinsevencalendar days,andeitherdestroyortransfertheagenttoaregisteredlaboratorywithinsevendays.

References

Allen, C., Kelman, A., and French, E. R. 2001. Brownrot.Pages1113in:Compendiumofpotatodiseases,2nd.ed.Stevenson,W.R., Loria,R.,Franc,G.D.,andWeingartner,D.P.,eds.APSPress,St.Paul,M.N. Autrique, A. and Potts, M. 1987. Theinfluenceofmixedcroppingonthecontrolofpotatobacterialwilt( solanacearum ). AnnalsofAppliedBiology111:125133. Boshou, L. 2005. Abroadreviewandperspectiveonbreedingforresistancetobacterialwilt.Pages225238in:Bacterialwiltdiseaseand the Ralstonia solanacearum speciescomplex.Allen,C.,Prior,P.,andHayward,A.C.,eds.APSpress,St.Paul,M.N. CABI/EPPO. 1999. Distributionmapsofplantdiseases.MapN0.785CABInternational.Wallingford,U.K.

Ralstonia solanacearum race 3 biovar 2, Page 11

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Caruso, P., Gorris, M. T., Cambra, M., Palomo, J. L., Collar, J., and Lopez, M. M. 2002. Enrichmentdoubleantibodysandwichindirect enzymelinked immunosorbent assay that uses a specific monoclonal antibody for sensitive detection of Ralstonia solanacearum in asymptomaticpotatotubers.AppliedandEnvironmentalMicrobiology68:36343638. Cook, D., Barlow, E., and Sequeira, L. 1989. Geneticdiversityof Pseudomonas solanacearum :Detectionofrestrictionfragmentlength polymorphismswithDNAprobesthatspecifyvirulenceandthehypersensitiveresponse.MolecularPlantMicrobeInteractions2:113121. Cook, D. and Sequeira, L. 1991. TheuseofsubtractivehybridizationtoobtainaDNAprobespecificfor Pseudomonas solanacearum race3.MolecularandGeneral227:401410. Cook, D. and Sequeira, L. 1994. Straindifferentiationof Pseudomonas solanacearum bymoleculargeneticmethods.Pages7793in: Bacterial wilt: the disease and its causative agent, Pseudomonas solanacearum . A. C. Hayward and G. L. Hartman, eds. CAB International,Wallingford,U.K. Coutinho, T. A. 2005. Introductionandprospectusonthesurvivalof R. solanacearum .Pages2938in:Bacterialwiltdiseaseandthe Ralstonia solanacearum speciescomplex.Allen,C.,Prior,P.,andHayward,A.C.,eds.APSpress,St.Paul,M.N. Denny, T. P. 2006. Plantpathogenic Ralstonia species.Pages573644in:Plantassociatedbacteria.S.S.Gnanamanickam,ed.Springer Publishing,Dordrecht,TheNetherlands. Denny, T. P. and Hayward, A. C. 2001. Gramnegativebacteria: Ralstonia .Pages151174in:Laboratoryguideforidentificationofplant pathogenicbacteria,3rded.Schaad,N.W.,Jones,J.B.,andChun,W.,eds.APSPress,St.Paul,M.N. Douglas, S. M. 2002. Diseasesofgeranium.TheConnecticutAgriculturalExperimentStation,NewHaven,C.T. Elphinstone, J. G. 2001. Monitoringandcontrolofthepotatobrownrotbacterium( Ralstonia solanacearum )intheUK:Acasestudyin: ProceedingsoftheFNK/EAPR/ESA/UEITP2ndEuropeanPotatoProcessingConference.HeldNov.,1415th.Lausanne,Switzerland. Elphinstone, J. G. 2005. Thecurrentbacterialwiltsituation:aglobaloverview.Pages928in:Bacterialwiltdiseaseandthe Ralstonia solanacearum speciescomplex.C.Allen,P.Prior,andA.C.Hayward,eds.APSpress,StPaul,M.N. Elphinstone, J. G., Henessy, J., Wilson, J. K., and Stead, D. 1996. Sensitivity of different methods for the detection of Ralstonia solanacearum inpotatotuberextracts.BulletinOEPP/EPPOBulletin26:663678. Elphinstone, J. and Harris, L. 2002. Monitoringandcontrolofthepotatobrownrotbacteriuminirrigationwater.2p.BritishPotato Council,Oxford,U.K. Englebrecht, M. C. 1994. Modificationofasemiselectivemediumfortheisolationandquantificationof Pseudomonas solanacearum . Pages35in:Bacterialwiltnewsletter.Hayward,A.C.,ed.ACIAR,Canberra,Australia. Farag, N. S., Lashin, S. M., All-Abdel, R. S., Shatta, H. M., and Seif-Elyazal, A. M. 1982. Antibioticsandcontrolofpotatoblacklegand brownrotdiseases.AgriculturalResearchReview60:149166. Fegan M. and Prior P. 2005. Howcomplexisthe" Ralstonia solanacearum "complex?Pages449461in:Bacterialwiltdiseaseandthe Ralstonia solanacearum speciescomplex.C.,Allen,P.,Prior,A.C.,Hayward,eds.APSPress,St.Paul,M.N. Fegan, M., Holoway, A. C., Hayward, A. C., and Timmis, J. 1998. Developmentofadiagnostictestbasedonthepolymerasechain reactiontoidentifystrainsof R. solanacearum exhibitingthebiovar2genotype.Pages3443in:Bacterialwiltdisease:Molecularand ecologicalaspects.P.,Prior,C.,Allen,andJ.,Elphinstone,eds.SpringerVerlag,Berlin,Germany. Floyd, J. 2003. Actionplanfor Ralstonia solanacearum race3,biovar2foundinnurseryfacilities.23p.PublishedFeb.,27,Version3. USDA,APHIS,PPQ.PestDetectionandManagementPrograms,Riverdale,M.D. French, E. R., Gutarra, L., Aley, P., and Elphinstone, J. 1995. Culturemediafor Pseudomonas solanacearum isolation,identification andmaintenance.Fitopatologia30:126130. Graham, J. and Lloyd, A. B. 1978. Solanum cinereum R.Br.,awildhostof Pseudomonas solanacearum biotypeII.Journalofthe AustralianInstituteofAgriculturalScience44:124126. Grey, B. E. and Steck, T. R. 2001. Theviablebutnonculturablestateof Ralstonia solanacearum maybeinvolvedinlongtermsurvival andplantinfection.AppliedandEnvironmentalMicrobiology67:38663872. Hayward, A. C. 1975. Biotypesof Pseudomonas solanacearum inAustralia.AustralianPlantPathologySocietyNewsletter4:911. Hayward, A. C. 1991. Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum . Annual Review of Phytopathology29:6587.

Ralstonia solanacearum race 3 biovar 2, Page 12

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Janse, J. D. 1996. PotatobrownrotinwesternEuropehistory,presentoccurrenceandsomeremarksonpossibleorigin,epidemiology andcontrolstrategies.BulletinOEPP/EPPOBulletin26:679695. Janse, J. D., van den Beld, H. E., Elphinstone, J., Simpkins, S., Tjou-Tam-Sin, L. N. A., and van Vaerenbergh, J. 2005. Introduction toEuropeof Ralstonia solanacearum biovar2,race3in zonale cuttingsfromKenya.Pages8194in:Bacterialwiltdisease andthe Ralstonia solanacearum speciescomplex.C.Allen,P.Prior,andA.C.Hayward,eds.APSPress,StPaul,M.N. Kelman, A. 1954. The relationship of pathogenicity of Pseudomonas solanacearum to colony appearance in a tetrazolium medium. Phytopathology44:693695. Kelman, A. and Sequeira, L. 1965. Roottorootspreadof Pseudomonas solanacearum .Phytopathology55:304309. Lambert, C. D. 2002. Agriculturalbioterrorismprotectionactof2002:possession,use,andtransferofbiological;agentsandtoxins;interim andfinalrule.(7CFRPart331).FederalRegister67:7690876938. Lemaga, B., Kanzikwera, R., Kakuhenzire, R., Hakiza, J. J., and Manzi, G. 2001. Theeffectofcroprotationonbacterialwiltincidence andpotatotuberyields.AfricanCropScienceyJournal9:257266. Lemay, A., Redlin, S., Fowler, G., and Dirani, M. 2003. Pestdatasheet: Ralstonia solanacearum race3biovar2.PublishedFeb.,12. USDAAPHISPPQ.Centerforplanthealthscienceandtechnology.Plantepidemiologyandriskanalysislaboratory,Raleigh,N.C. Luo, K. and Wang, Z. 1983. Study of bacterial wilt ( Pseudomonas solanacearum ) controlled by antagonistic and avirulent P. solanacearum .ActaPhytopathologicalSinica13:5156. McCarter, S. M. 1991. Bacterialwilt.Pages2829in:Compendiumoftomatodiseases.Jones,J.B.,Jones,J.P.,Stall,R.E.,andZitter,T. A.,eds.APSPress,St.Paul,M.N. Mclaughlin, R. J. and Sequeira, L. 1988. Evaluation of an avirulent strain of Pseudomonas solanacearum for biological control of bacterialwiltofpotato.AmericanPotatoJournal65:255268. Michel, V. V. and Mew, T. W. 1998. Effect of a soil amendment on the survival of Ralstonia solanacearum in different soils. Phytopathology88:300305. Nishiyama, M., Shiomi, Y., Suzuki, S., and Marumoto, T. 1999. Suppressionofgrowthof Ralstonia solanacearum ,tomatobacterialwilt agent,on/intomatoseedlingscultivatedinasuppressivesoil.SoilScienceandPlantNutrition45:7987. Norman, D. J., Chen, J., Yuen, J. M. F., Mangravita-Novo, A., Byrne, D., and Walsh, L. 2006. Controlofbacterialwiltofgeraniumwith phosphorousacid.PlantDisease90:798802. Olsson, K. 1976. Experienceofbrownrotcausedby Pseudomonas solanacearum .EPPOBulletin6:199207. Persley, G. J. 1986. Ecologyof Pseudomonas solanacearum ,thecausalagentofbacterialwilt.Pages7176in:Bacterialwiltdiseasein AsiaandtheSouthPacific.ACIARProceedingsN0.13.G.J.Persley,ed.ACIAR,Canberra,Australia. Pradeep, K. and Sood, A. K. 2001. Integrationofantagonistic rhizobacteria andsoilsolarizationforthemanagementofbacterialwiltof tomatocausedby Ralstonia solanacearum .IndianPhytopathology54:1215. Pradhanang, P. M., Ji, P., Momol, M. T., Olson, S. M., and Jones, J. B. 2005. ApplicationofacibenzolarSmethylenhanceshost resistanceintomatoagainst Ralstonia solanacearum .PlantDisease89:989993. Pradhanang, P.M., Momol, M.T., Olson, S.M., and Jones, J.B. 2003. Effects of plant essential oils on Ralstonia solanacearum populationdensityandbacterialwiltincidenceintomato.PlantDisease87:423427. Priou, S., Gutarra, L., and Aley, P. 2006. Animprovedenrichmentbrothforthesensitivedetectionof Ralstonia solanacearum (biovars1 and2A)insoilusingDASELISA.PlantPathology55:3645. Rowe, R. C. and Powelson, M. L. 2007. Potatohealthmanagement:aholisticapproach.Pages15in:Potatohealthmanagement, Seconded.Johnson,D.A.,ed.APSPressPublisher:St.Paul,M.N. Roy, S., Ojha, P. K., Ojha, K. L., Upadhyay, J. P., and Jha, M. M. 1999. Effect of mixed application of fertilizers and organic amendmentsonthediseaseintensityofwiltcomplexesonbanana(Musasp.).JournalofAppliedBiology9:8486. Saddler, G. S. 2005. Managementofbacterialwiltdisease.Pages121132in:Bacterialwiltdiseaseandthe Ralstonia solanacearum speciescomplex.Allen,C.,Prior,P.,andHayward,A.C.,eds.APSpress,St.Paul,M.N. Schaad, N. W., Gaush, P. E., Ozakman M., inventors. 2007. Realtime PCR primers and probes for identification of Ralstonia solanacearum race3,biovar2inpotatoandotherplants.Issued:Aug.,28.Patent6,410,223.

Ralstonia solanacearum race 3 biovar 2, Page 13

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Smith, J. J. and Saddler, G. S. 2001. Theuseofavirulentmutantsof Ralstonia solanacearum tocontrolbacterialwiltdisease.Pages 159176in:Bioticinteractionsinplantpathogenassociations.Jeger,M.J.andSpence,N.J.,eds.CABIPublishing,Wallingford,U.K. Smith, J. J., Offord, L. C., Holderness, M., and Saddler, G. S. 1995. Genetic diversity of Burkholderia solanacearum (synonym Pseudomonas solanacearum )race3inKenya.AppliedandEnvironmentalMicrobiology61:42624268. Stefani, E. and Mazzucchi, U. 1997. Protein electrophoretograms for the identification of Ralstonia solanacearum in potato tubers. Journalofplantpathology79:189195. Swanson, J. K., Yao, J., Tans-Kersten, J., and Allen, C. 2005. Behaviorof Ralstonia solanacearum race3biovar2duinglatentinfection ofgeranium.Phytopathology95:136143. Trigalet, A., Trigalet-Demery, D., and Prior, P. 1998. Elementsofbiocontroloftomatobacterialwilt.Pages332336in:Bacterialwilt disease:Molecularandecologicalaspects.Prior,P.,AllenC.,andElphinstoneJ.,eds.SpringerVerlag,Berlin,Germany. Van der Wolf, J. M., Bonants, P. J. M., Smith, J. J., Hagenaar, M., Nijhuis, E., van Beckhoven, J. R. C., Saddler, G. S., Trigalet, A., and Feuillade, R. 1998. Geneticdiversityof Ralstonia solanacearum race3inWesternEuropeasdeterminedbyAFLP,RCPFGEand RepPCR.Pages4449in:Bacterialwiltdisease:Molecularandecologicalaspects.P.,Prior,C.,Allen,andJ.,Elphinstone,eds.Springer Verlag,Berlin,Germany. Van Elsas, J.D., Kastelein, P., van Bekkum, P., van der Wolf, J.M., de Vries, P.M., and van Overbeek, L.S. 2000. Survivalof Ralstonia solanacearum biovar2,thecausativeagentofpotatobrownrot,infieldandmicrocosmsoilsintemperateclimates. Phytopathology 90:13581366. Weller, S. A., Elphinstone, J. G., Smith, N. C., Boonham, N., and Stead, D. E. 2000. Detectionof Ralstonia solanacearum strainswitha quantitative,multiplex,realtime,fluorogenicPCR(TaqMan)assay.AppliedandEnvironmentalMicrobiology66:28532858. Yabuuchi, E., Kosako, Y., Yano, I., Hotta, H., and Nishiuchi, Y. 1995. Transferoftwo Burkholderia andan Alcaligenes speciesto Ralstonia gen.nov.:Proposalof (Ralston,PalleroniandDouderoff1973)comb.nov., Ralstonia solanacearum (Smith 1896)comb.nov.and Ralstonia eutropha (Davis1969)comb.nov.MicrobiologyandImmunology39,897904. Yao, G., Zhang, F., and Li, Z. 1994. Controlofbacterialwiltwithsoilamendment.ChineseJournalofBiologicalControl10:106109.

Glossary (Inorderofappearanceinthetext) Pathogen. Apathogen,orinfectiousagent,isabiologicalagentthatcausesdiseaseorillnesstoitshost.Anumberofdifferentorganisms cancauseplantinfectiousdisease.Amongthemarefungi,bacteria,viruses,orparasiticplants. Bacterium. Abacteriumisamicroscopicorganismconsistingofindividualcells.Bacteriacausediseasesinmanyhostplants.Theycan surviveoncropresidue,seed,orinsoilandwater;theymaybespreadbyplantorplantcuttingstransfer,mechanicalmeans,insects,and seeds. Symptoms. Asymptomisasubjectiveevidenceofdiseaseorphysicaldisturbance.Itisanevidentreactionbyaplanttoapathogen,and isnotnecessarilyvisible.Differentcaninducesimilarsymptoms. Vascular bundles. Vascular,orconductive,bundlesareresponsibleforlongdistancetransportofwaterandnutrientsthroughout the plant.Highlydevelopedplantshavetwotypesofvasculartissues:thexylemandthephloem. Stolons. A stolon is a slender stem that grows horizontally along the ground, giving rise to roots and aerial (vertical) branches at specializedpointscallednodes. Chlorosis. Chlorosisisaconditioninwhichleavesproduceinsufficientchlorophyll.Aschlorophyllisresponsibleforthegreencolorof leaves,chloroticleavesarepale,yellow,oryellowwhite. Necrotic. Inplantbiology,necrosisisthenamegiventodeathofplantcellsandplanttissue.Thetissuefirstturnsbrownandsubsequently dies. Xylem. Thexylemisresponsiblefortransportationofrawsap(waterandnutrients)fromrootstoaerialpartsoftheplant. R. solanacearum isalimitedxyleminvadingpathogen.

Ralstonia solanacearum race 3 biovar 2, Page 14

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Solanaceae. The Solanaceae family,alsoknownasthe"nightshade"family,isafamilyoffloweringplants,manyofwhichareedible,while othersarepoisonous.ThefamilyincludestheDaturaorJimsonweed,eggplant,mandrake,deadlynightshadeorbelladonna,capsicum, potato,tobacco,tomato,andpetunia. Gram-negative. BacteriahavebeenclassifiedasGramnegativeorGrampositiveregardingstructuraldifferencesintheircellwalls.Many speciesofGramnegativebacteriaarepathogenic.ThispathogeniccapabilityisusuallyassociatedwithcertaincomponentsofGram negativecellwalls. Aerobic. Anaerobicorganismrequiresoxygenforaerobiccellularrespiration.Cellularrespirationisthemechanismbywhichaerobic organismrequireoxygentoutilizesubstrates(forexamplesugarsandfats)inordertoobtainenergy. Bacterial colonies. Onthesurfaceofasolidgrowthmedium,individualbacterialcellswillgrowandmultiplytobecomevisiblebacterial colonies.Allcellswithinthecolonydescendfromasingleancestorandareidentical.Characteristicsofbacterialcolonies(color,aspect, diameterorgrowthrate)arecommonlyusedforbacteriaidentification. Virulent. Virulencereferstothedegreeofpathogenicityofa,orinotherwordstherelativeabilityofamicroorganismto causedisease. Selective medium. Agrowthorculturemediumisasubstanceinwhichmicroorganisms,suchasbacteria,orcellscangrow.Selective media are used for the growth of only select microorganisms. They usually contain antibiotics to which the select microorganims is resistantto. Strains. Astrainisageneticvariantorsubtypeofamicroorganism(forexamplevirusorbacteriumor). Variability. Variabilityherereferstovariationofagivencharacteristicfromonebacterialstrain(orgroupofstrains)totheother. Species. Aspeciesisoneofthebasicunitsofbiologicalclassification.Aspeciesisoftendefinedasagroupoforganismscapableof interbreedingandproducingfertileoffspring.Eachspeciesisplacedwithinasinglegenus. . R. solanacearum isconsidereda"speciescomplex"asitincludesindividualisolatesthatmaynotbeconsideredwithin asinglespecies,asitisthecaseforthebananablooddiseasebacteriumor Pseudomonas syzygii . Carbohydrate substrates .Carbohydratesaresimpleorganiccompoundssuchassugarsandstarchwhichcontaincarbonchains.They fill numerous roles in living organisms, such as the storage and transport of energy and structural components. Carbohydrates are differentiallyusedassourceofenergybybacteria. Races. Araceisformedbyagroupofbacterialstrainsthataredifferentiatedbasedontheresponseonasetofhostdifferentials. Biovars. Abiovarisagroupofbacterialstrainsthatare distinguishablefromotherstrainsofthesamespeciesonthebasisoftheir physiologicalcharacteristics. Variation of DNA sequences. ComparisonofDNAsequencesiscommonlyusedforclassificationstudiesofstrainsofmicroorganisms.It isbasicallyassumedthatthehigherthehomologyisbetweentwostrains,themorecloselyrelatedthestrainsareintermsofevolution. Thesetypesofstudiesareknownasphylogeneticstudies. Sequevars. A sequevar, or sequence variant, is defined as a group of strains with a highly conserved sequence within the area sequenced. Phylotypes. Aphylotypeisdefinedasagroupofstrainsthatarecloselyrelatedbasedonphylogeneticanalysisofsequencedata.Each phylotypeiscomposedofanumberofsequevars. Endoglucanase. Endoglucanaseisatypeofcellulasewhichisaclassofenzymesproducedbyfungi,bacteria,andprotozoans that catalyzethecellulolysis(orhydrolysis)ofcellulose. Root-knot nematode. Rootknotnematodesareplantparasiticroundwormsfromthegenus Meloidogyne .Theyexistinsoilinareaswith hotclimatesorshortwinters.Thereareagreatmanyparasiticforms,includingpathogensinmostplants,animals,andalsoinhumans. Vegetative propagation. Vegetativepropagation,reproductionormultiplicationisatypeofasexualreproductionfoundinplants.Itisa processbywhichnewplant"individuals"ariseorareobtainedwithoutproductionofseeds. Ebb-and-flow subirrigation. Ebbandflowsubirrigationisamethodofirrigationthatisusuallyusedforpottedplantsingreenhouses. Waterisdeliveredtotheplantrootzonefrombelowthesoilsurfaceandabsorbedupwards. Immunodiagnostic assays.Theseassaysarebasedontheuseofantibioticsinvarioustestformatstodetectandidentifyanymolecules orcells(includingbacteria).Themostcommonlyusedassaysforbacteriadetectionandidentificationareagglutination,enzymelinked immunosorbentassay(ELIZA),immunofluorescence,lateralflowstriptestsorflowthroughassays.

Ralstonia solanacearum race 3 biovar 2, Page 15

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Antibodies. Antibodies(alsoknownasimmunoglobulins)areproteinsthatareusedbytheimmunesystemtoidentifyandneutralize foreignobjects,suchasbacteriaandviruses.Duetotheirspecificity,theyarecommonlyusedinbiologyfordetectionandidentificationof microorganisms. Antigens. Anantigenisanymoleculethatisrecognizedbyanantibody. Nucleic-acid. Anucleicacidisamoleculecomposedofnucleotidechains.Thesemoleculescarrygeneticinformation.Themostcommon nucleicacidsaredeoxyribonucleicacid(DNA)andribonucleicacid(RNA).Nucleicacidsareuniversalinlivingthings,astheyarefoundin allcellsandviruses. Polymerase chain reaction (PCR) amplification. The polymerase chain reaction is a technique that consists of amplifying a DNA moleculeexponentially. Multiplex-PCR. InmultiplexPCRamplification,multipleprimerpairsareusedforDNAamplification. Cultivars. A cultivaris acultivatedplantthathasbeenselected and given a unique name because it has desirable characteristics (decorativeoruseful)thatdistinguishitfromotherwisesimilarplantsofthesamespecies. Endemic. Endemic,inabroadsense,canmean"belonging"or"nativeto","characteristicof",or"prevalentin"aparticulargeography, area,orenvironment;nativetoanareaorscope. Disease incidence. DiseaseIncidenceisameasureoftheriskofdevelopingthediseasewithinaspecifiedperiodoftime Plant resistance inducers. Plantresistanceinducersarenaturalorsyntheticchemicalcompoundsthatapparentlyactbystimulatingthe naturaldefenseresponseintheplant. Suppressive soils. Asuppressivesoilisonethatpossessessomelevelofcontrolofadiseaseformingorganism.Allsoilshaveanatural levelofdiseasesuppressiveactivities.Inmostsoilslongtermmanagementcaneitherreduceorincreasethislevelofsuppression. Biological control. Biologicalcontrolisdefinedasthereductionofpestpopulations(includinginsects,mites,weedsandplantdiseases) bynaturalenemies.Biologicalcontrolagentsofplantdiseasesaremostoftenreferredtoasantagonists.

Internet links

Ralstonia solanacearum race 3 biovar 2 original webpage: http://plantpath.ifas.ufl.edu/rsol/Trainingmodules/RalstoniaR3b2_Sptms_Module.html Ralstonia solanacearum /Brown rot-Bacterial wilt website: http://plantpath.ifas.ufl.edu/rsol/

Brown rot of potato webpage: http://plantpath.ifas.ufl.edu/rsol/Trainingmodules/BRPotato_Module.html

Southern wilt of geranium webpage: http://plantpath.ifas.ufl.edu/rsol/Trainingmodules/SWGeranium_Module.html

Bacterial wilt of tomato webpage: http://plantpath.ifas.ufl.edu/rsol/Trainingmodules/BWTomato_Module.html

USDA-APHIS Select Agents and Toxins list: http://www.aphis.usda.gov/programs/ag_selectagent/ag_bioterr_toxinlist.shtml Liquid and solid (agar) growth media for R. solanacearum : http://plantpath.ifas.ufl.edu/rsol/Culturemedia.html Optimized protocols for detection and identification of R. solanacearum - European Union Council Directive 98-57-EC http://plantpath.ifas.ufl.edu/rsol/RalstoniaPublications_PDF/Protocols_UE_CoucilDirective_9857EC_2006.pdf New pest response guidelines: Ralstonia solanacearum race 3 biovar 2 http://www.aphis.usda.gov/import_export/plants/manuals/emergency/downloads/nprgralstonia.pdf

Ralstonia solanacearum race 3 biovar 2, Page 16

USDA-NRI Project: R. solanacearum race 3 biovar 2: detection, exclusion and analysis of a Select Agent Educational modules

Recovery plan for Ralstonia solanacearum race 3 biovar 2 CausingBrownRotofPotato,BacterialWiltofTomato,andSouthernWiltofGeranium http://www.ars.usda.gov/SP2UserFiles/Place/00000000/opmp/Rs32RecoveryPlanvOct112006.pdf Minimum sanitation protocols for offshore geranium cutting production http://www.aphis.usda.gov/plant_health/plant_pest_info/ralstonia/downloads/ralstoniaworkplan.pdf USDA-APHIS permits webpage: http://www.aphis.usda.gov/plant_health/permits/index.shtml ©2008 R. solanacearum race 3 biovar 2 USDA-NRI project. All rights reserved.

Ralstonia solanacearum race 3 biovar 2, Page 17