cancers Article Loss of RET Promotes Mesenchymal Identity in Neuroblastoma Cells Joachim T. Siaw 1,†, Jonatan L. Gabre 1,2,† , Ezgi Uçkun 1 , Marc Vigny 3, Wancun Zhang 4, Jimmy Van den Eynden 2 , Bengt Hallberg 1 , Ruth H. Palmer 1 and Jikui Guan 1,4,* 1 Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, SE-40530 Gothenburg, Sweden;
[email protected] (J.T.S.);
[email protected] (J.L.G.);
[email protected] (E.U.);
[email protected] (B.H.);
[email protected] (R.H.P.) 2 Anatomy and Embryology Unit, Department of Human Structure and Repair, Ghent University, 9000 Ghent, Belgium;
[email protected] 3 Université Pierre et Marie Curie, UPMC, INSERM UMRS-839, 75005 Paris, France;
[email protected] 4 Department of Pediatric Oncology Surgery, Children’s Hospital Affiliated to Zhengzhou University, Zhengzhou 450018, China;
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[email protected] † These authors contributed equally to this work. Simple Summary: The anaplastic lymphoma kinase (ALK) and rearranged during transfection (RET) receptor tyrosine kinases (RTKs) are expressed in both the developing neural crest and the pediatric cancer neuroblastoma. Moreover, ALK is mutated in approximately 10% of neuroblastomas. Here, we investigated ALK and RET in neuroblastoma, with the aim of better understanding their respective contributions. Using neuroblastoma cell lines, we show that ALK modulates RET signaling at the level of RET phosphorylation, as well as at the level of transcription. Using CRISPR/Cas9, we generated Citation: Siaw, J.T.; Gabre, J.L.; Uçkun, E.; Vigny, M.; Zhang, W.; Van RET knockout neuroblastoma cell lines and performed a multi-omics approach, combining RNA-Seq den Eynden, J.; Hallberg, B.; Palmer, and proteomics to characterize the effect of deleting RET in a neuroblastoma context.