Phylum Mollusca; Ziser Lecture Notes, 2012.10 1 Animals: Phylum Mollusca; Ziser Lecture Notes, 2012.10 2
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The Pax Gene Family: Highlights from Cephalopods Sandra Navet, Auxane Buresi, Sébastien Baratte, Aude Andouche, Laure Bonnaud-Ponticelli, Yann Bassaglia
The Pax gene family: Highlights from cephalopods Sandra Navet, Auxane Buresi, Sébastien Baratte, Aude Andouche, Laure Bonnaud-Ponticelli, Yann Bassaglia To cite this version: Sandra Navet, Auxane Buresi, Sébastien Baratte, Aude Andouche, Laure Bonnaud-Ponticelli, et al.. The Pax gene family: Highlights from cephalopods. PLoS ONE, Public Library of Science, 2017, 12 (3), pp.e0172719. 10.1371/journal.pone.0172719. hal-01921138 HAL Id: hal-01921138 https://hal.archives-ouvertes.fr/hal-01921138 Submitted on 13 Nov 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License RESEARCH ARTICLE The Pax gene family: Highlights from cephalopods Sandra Navet1☯, Auxane Buresi1☯, SeÂbastien Baratte1,2, Aude Andouche1, Laure Bonnaud-Ponticelli1, Yann Bassaglia1,3* 1 UMR BOREA MNHN/CNRS7208/IRD207/UPMC/UCN/UA, MuseÂum National d'Histoire Naturelle, Sorbonne UniversiteÂs, Paris, France, 2 Univ. Paris Sorbonne-ESPE, Sorbonne UniversiteÂs, Paris, France, 3 Univ. Paris Est CreÂteil-Val de Marne, CreÂteil, France ☯ These authors contributed equally to this work. * [email protected] a1111111111 a1111111111 a1111111111 a1111111111 Abstract a1111111111 Pax genes play important roles in Metazoan development. Their evolution has been exten- sively studied but Lophotrochozoa are usually omitted. -
Interpreting Amphioxus, and Thoughts on Ancestral Chordate Mouths and Brains THURSTON LACALLI*
Int. J. Dev. Biol. 61: 649-654 (2017) doi: 10.1387/ijdb.170105tl www.intjdevbiol.com Interpreting amphioxus, and thoughts on ancestral chordate mouths and brains THURSTON LACALLI* Biology Department, University of Victoria, Victoria, Canada ABSTRACT Amphioxus is increasingly important as a model for ancestral chordates. Nevertheless, it is secondarily modified in various ways, especially in the larva, whose small size has resulted in a rescaling and repositioning of structures. This is especially pronounced in the head region, where the mouth opens asymmetrically on the left side, leading to speculation that the mouth is sec- ondarily derived, e.g. from a gill slit, and is hence not homologous with mouths in other animals. The available evidence does not, in the author’s view, support this interpretation. A second issue is raised concerning the identity and function of the midbrain homolog, whose extent depends on whether greater weight is given to dorsal landmarks in the nerve cord or ventral ones. The presence of two sets of dorsal photoreceptors, the lamellar body and Joseph cells, functionally links the region they occupy to the vertebrate midbrain. The midbrain is currently suggested to be the brain region in which primary consciousness emerged during early vertebrate evolution, so the origin of its constituent cells is of special interest. Possible amphioxus homologs include the anterior-most group of dorsal bipolar cells (ADBs), which are apico-basally inverted (i.e. synapse-bearing neurites arise from the apical cell compartment) in the same fashion as cortical neurons in vertebrates. This may have been a crucial innovation for chordates, responsible for both improved sensory process- ing and, eventually, consciousness. -
Gastropoda: Turbinellidae)
Ruthenica, 200 I, II (2): 81-136. ©Ruthenica, 2001 A revision of the Recent species of Exilia, formerly Benthovoluta (Gastropoda: Turbinellidae) I 2 3 Yuri I. KANTOR , Philippe BOUCHET , Anton OLEINIK 1 A.N. Severtzov Institute of Problems of Evolution of the Russian Academy of Sciences, Leninski prosp. 33, Moscow 117071, RUSSIA; 2 Museum national d'Histoire naturelle, 55, Rue BufJon, 75005 Paris, FRANCE; 3 Department of Geography & Geology Florida Atlantic University, 777 Glades Rd, Physical Sciences Building, PS 336, Boca Raton FL 33431-0991, USA ABSTRACT. The range of shell characters (overall established among some of these nominal taxa. shape, sculpture, columellar plaits, protoconchs) Schematically, Exilia Conrad, 1860, Palaeorhaphis exhibited by fossil and Recent species placed in Stewart, 1927, and Graphidula Stephenson, 1941 Exilia Conrad, 1860, Mitraefusus Bellardi, 1873, are currently used as valid genera for Late Creta Mesorhytis Meek, 1876, Surculina Dall, 1908, Phe ceous to Neogene fossils; and Surculina Dall, 1908 nacoptygma Dall, 1918, Palaeorhaphis Stewart, 1927, and Benthovoluta Kuroda et Habe, 1950 are cur Zexilia Finlay, 1926, Graphidula Stephenson, 1941, rently used as valid genera for Recent deep-water Benthovoluta Kuroda et Habe, 1950, and Chatha species from middle to low latitudes. Each of these midia Dell, 1956 and the anatomy of the Recent nominal taxa has had a complex history of family species precludes separation of more than one genus. allocation, which has not facilitated comparisons Consequently all of these nominal genera are sy on a broader scale. Exilia and Benthovoluta are the nonymised with Exilia, with a stratigraphical range genera best known in the fossil and Recent litera from Late Cretaceous to Recent. -
Deep-Water Buccinidae (Gastropoda: Neogastropoda) from Sunken Wood, Vents and Seeps: Molecular Phylogeny and Taxonomy Yu.I
Deep-water Buccinidae (Gastropoda: Neogastropoda) from sunken wood, vents and seeps: molecular phylogeny and taxonomy Yu.I. Kantor, N. Puillandre, K. Fraussen, A.E. Fedosov, P. Bouchet To cite this version: Yu.I. Kantor, N. Puillandre, K. Fraussen, A.E. Fedosov, P. Bouchet. Deep-water Buccinidae (Gas- tropoda: Neogastropoda) from sunken wood, vents and seeps: molecular phylogeny and taxonomy. Journal of the Marine Biological Association of the UK, Cambridge University Press (CUP), 2013, 93 (8), pp.2177-2195. 10.1017/S0025315413000672. hal-02458197 HAL Id: hal-02458197 https://hal.archives-ouvertes.fr/hal-02458197 Submitted on 28 Jan 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Deep-water Buccinidae (Gastropoda: Neogastropoda) from sunken wood, vents and seeps: Molecular phylogeny and taxonomy KANTOR YU.I.1, PUILLANDRE N.2, FRAUSSEN K.3, FEDOSOV A.E.1, BOUCHET P.2 1 A.N. Severtzov Institute of Ecology and Evolution of Russian Academy of Sciences, Leninski Prosp. 33, Moscow 119071, Russia, 2 Muséum National d’Histoire Naturelle, Departement Systematique et Evolution, UMR 7138, 43, Rue Cuvier, 75231 Paris, France, 3 Leuvensestraat 25, B–3200 Aarschot, Belgium ABSTRACT Buccinidae - like other canivorous and predatory molluscs - are generally considered to be occasional visitors or rare colonizers in deep-sea biogenic habitats. -
Zoology Lab Manual
General Zoology Lab Supplement Stephen W. Ziser Department of Biology Pinnacle Campus To Accompany the Zoology Lab Manual: Smith, D. G. & M. P. Schenk Exploring Zoology: A Laboratory Guide. Morton Publishing Co. for BIOL 1413 General Zoology 2017.5 Biology 1413 Introductory Zoology – Supplement to Lab Manual; Ziser 2015.12 1 General Zoology Laboratory Exercises 1. Orientation, Lab Safety, Animal Collection . 3 2. Lab Skills & Microscopy . 14 3. Animal Cells & Tissues . 15 4. Animal Organs & Organ Systems . 17 5. Animal Reproduction . 25 6. Animal Development . 27 7. Some Animal-Like Protists . 31 8. The Animal Kingdom . 33 9. Phylum Porifera (Sponges) . 47 10. Phyla Cnidaria (Jellyfish & Corals) & Ctenophora . 49 11. Phylum Platyhelminthes (Flatworms) . 52 12. Phylum Nematoda (Roundworms) . 56 13. Phyla Rotifera . 59 14. Acanthocephala, Gastrotricha & Nematomorpha . 60 15. Phylum Mollusca (Molluscs) . 67 16. Phyla Brachiopoda & Ectoprocta . 73 17. Phylum Annelida (Segmented Worms) . 74 18. Phyla Sipuncula . 78 19. Phylum Arthropoda (I): Trilobita, Myriopoda . 79 20. Phylum Arthropoda (II): Chelicerata . 81 21. Phylum Arthropods (III): Crustacea . 86 22. Phylum Arthropods (IV): Hexapoda . 90 23. Phyla Onycophora & Tardigrada . 97 24. Phylum Echinodermata (Echinoderms) . .104 25. Phyla Chaetognatha & Hemichordata . 108 26. Phylum Chordata (I): Lower Chordates & Agnatha . 109 27. Phylum Chordata (II): Chondrichthyes & Osteichthyes . 112 28. Phylum Chordata (III): Amphibia . 115 29. Phylum Chordata (IV): Reptilia . 118 30. Phylum Chordata (V): Aves . 121 31. Phylum Chordata (VI): Mammalia . 124 Lab Reports & Assignments Identifying Animal Phyla . 39 Identifying Common Freshwater Invertebrates . 42 Lab Report for Practical #1 . 43 Lab Report for Practical #2 . 62 Identification of Insect Orders . 96 Lab Report for Practical #3 . -
Bivalve Biology - Glossary
Bivalve Biology - Glossary Compiled by: Dale Leavitt Roger Williams University Bristol, RI A Aberrant: (L ab = from; erro = wonder) deviating from the usual type of its group; abnormal; wandering; straying; different Accessory plate: An extra, small, horny plate over the hinge area or siphons. Adapical: Toward shell apex along axis or slightly oblique to it. Adductor: (L ad = to; ducere = to lead) A muscle that draws a structure towards the medial line. The major muscles (usually two in number) of the bivalves, which are used to close the shell. Adductor scar: A small, circular impression on the inside of the valve marking the attachment point of an adductor muscle. Annulated: Marked with rings. Annulation or Annular ring: A growth increment in a tubular shell marked by regular constrictions (e.g., caecum). Anterior: (L ante = before) situated in front, in lower animals relatively nearer the head; At or towards the front or head end of a shell. Anterior extremity or margin: Front or head end of animal or shell. In gastropod shells it is the front or head end of the animal, i.e. the opposite end of the apex of the shell; in bivalves the anterior margin is on the opposite side of the ligament, i.e. where the foot protrudes. Apex, Apexes or Apices: (L apex = the tip, summit) the tip of the spire of a gastropod and generally consists of the embryonic shell. First-formed tip of the shell. The beginning or summit of the shell. The beginning or summit or the gastropod spire. The top or earliest formed part of shell-tip of the protoconch in univalves-the umbos, beaks or prodissoconch in bivalves. -
Chapter Xii the Excretory System
CHAPTER XII THE EXCRETORY SYSTEM Palle ANATOMY OF THE EXCRETORY Anatomy of the excretory system ______________ _____ 271 Histology ___ __ 273 SYSTEM Physiology_ 274 The waste products_______________ __ __ 276 The excretory organ of the oyster occupies an Osmoregulatlon______ _________________________________________________ 278 Bibliography __ __ ____ 279 indistinctly outlined triangular area on either side of the visceral mass. On the surface its location End products of bivalve catabolism are excreted is marked by light brownish pigmentation. The by the nephridia, pericardial glands, wandering organ consists of a central part which lies between phagocytes, and the mantle epithelium. The the pericardium and the adductor muscle and two urinary function, which is the principal activity branches or limbs which extend along both sides or of the excretory system, is performed by the paired the body. The right limb is slightly longer nephridia situated on either side of the visceral than its opposite member. Excretory tissues are mass near the heart. The pericardial glands, as found directly under the surface epithelium; they the name indicates, are located on the wall of the are surrounded by branchial vessels and numerous pericardium but in the oysters and some other blood sinuses. species are represented by special cells on the outer The relation between the different parts of the wall of the auricles. The wandering phagocytes excretory system, the heart, and the adductor may be found throughout the tissues of the visceral muscle is shown diagrammatically in figure 244. mass and the gills. They accumulate on the sur Each nephridium of a bivalve is bent into a face of the body by diapedesis and are discarded. -
The Study of Nephridia and Genital Ducts Since 1895 (Continued)
The Study of Nephridia and Genital Ducts since 1895 (continued). By Edwin S. Goodrich, F.B.S. Department of Zoology and Comparative Anatomy, University Museum, Oxford. With 100 Text-figures. CONTENTS. ARTHROPOD A, p. 303. Peripatiodea, with Segmental Coelomo- ducts mostly excretory, p. 305. Crustacea, possibly with remnants of Nephridia, p. 308. Summary, p. 317. Arachnida, p. 318. Chilopoda, Chilognatha, Symphyla, Insecta Hexa- poda, p. 320. General summary for Arthropoda, p. 322. MOLLUSCA, p. 324. Larval Protonephridia and Adult Coelomic Kidneys and Genital Ducts, p. 325. Relation of these to Germ- layers, p. 327. Their Interpretation as Coelmoducts, p. 329. Gastropoda, p. 328. Lamellibranchia, p. 330. Possible segmentation, Solenogastnes, Polyplaca- phora, Cephalopoda, p. 330. Development of Larval Protonephridia, p. 331. General summary for Mollusca, p. 334. Acanthocephala, p. 337. Priapulida, p. 339. Chaeto- gnatha, p. 342. Sipunculida, p. 344. Phoronida, p. 345. Brachiopoda, p. 349. Hemichordata, p. 349. Tunicata, p. 349. Echinodermata, p. 352. Vertebrata, p. 353. General Morphology of the Excretory Tubules and Genital Ducts of Craniata, p. 353. Protonephridia of the Acrania; paired Protonephridia, p. 358. The Unpaired Protonephridium of Hatschek, p. 364. Development of Hatschek's Protonephridium, p. 364. Development of the paired Protonephridia, p. 367. GENERAL CONCLUSION 373 SUMMARY ........... 378 Phylum Arthropoda. Before 1895 various authors (Leydig, Kowalevsky, Lankester, Sedgwick, Grobben, Weldon, Allen, and others) had compared the excretory organs of the Arthropoda to the segmental organs of the Annelida. These arthropod organs were then and are still now often called 'nephridia'. But the comparison was general and somewhat vague, since at that time the distinction between 4 rue nephridia and coelomoducts had not yet been pointed out. -
Extrarenal Ammonia Excretion in the Terrestrial Pulmonate, Otala Lactea
RICE UNIVERSITY EXTRARIME AMMONIA EXCRETION IN THE TERRESTRIAL PULMONATE, OTALA LACTEA Kemait Vincent Speeg, Jr* A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF ARTS Thesis Director’s signature: Houston, Texas May, 1966 ABSTHACT An extrarenal nitrogen product has been identified in two terrestrial snails.. Otala lactea and Helix asnersa. The nitrogen waste has been determined qualitatively to be ammonia;.; This ammonia which is excreted has also been measured quantitatively but no correlation could be found between the amount of ammonia excreted and the size of the snail; The ammonia excretion was circadian with the majority of the waste being excreted during the daytime* Ammonia was formed by lung tissue homogenates in the absence of added substrates, but this could not be found for blood* Urea and amino acids were added as substrate and urea was the only significant substrate for ammonia production* The levels of ammonia and urea concentration have been measured in dif¬ ferent tissues* Urease activity has been found and charac¬ terized* It was found to be non-bacterial in origin. An approximation was made of the percentage of total nitrogen excreted extrarenally and fotmd to be 38%. On the basis of this approximation it was thought to be a significant means of nitrogen excretion; A dramatic increase in blood pH was found for Otala lactea*. Helix asuersa. and Busycon«. This was fotmd to be due to the loss of physically dissolved carbon dioxide. Carbonic anhydrase activity was not found in Otala -
The Pax Gene Family: Highlights from Cephalopods
RESEARCH ARTICLE The Pax gene family: Highlights from cephalopods Sandra Navet1☯, Auxane Buresi1☯, SeÂbastien Baratte1,2, Aude Andouche1, Laure Bonnaud-Ponticelli1, Yann Bassaglia1,3* 1 UMR BOREA MNHN/CNRS7208/IRD207/UPMC/UCN/UA, MuseÂum National d'Histoire Naturelle, Sorbonne UniversiteÂs, Paris, France, 2 Univ. Paris Sorbonne-ESPE, Sorbonne UniversiteÂs, Paris, France, 3 Univ. Paris Est CreÂteil-Val de Marne, CreÂteil, France ☯ These authors contributed equally to this work. * [email protected] a1111111111 a1111111111 a1111111111 a1111111111 Abstract a1111111111 Pax genes play important roles in Metazoan development. Their evolution has been exten- sively studied but Lophotrochozoa are usually omitted. We addressed the question of Pax paralog diversity in Lophotrochozoa by a thorough review of available databases. The exis- tence of six Pax families (Pax1/9, Pax2/5/8, Pax3/7, Pax4/6, Paxβ, PoxNeuro) was con- OPEN ACCESS firmed and the lophotrochozoan Paxβ subfamily was further characterized. Contrary to the Citation: Navet S, Buresi A, Baratte S, Andouche A, pattern reported in chordates, the Pax2/5/8 family is devoid of homeodomain in Lophotro- Bonnaud-Ponticelli L, Bassaglia Y (2017) The Pax chozoa. Expression patterns of the three main pax classes (pax2/5/8, pax3/7, pax4/6) dur- gene family: Highlights from cephalopods. PLoS ONE 12(3): e0172719. doi:10.1371/journal. ing Sepia officinalis development showed that Pax roles taken as ancestral and common in pone.0172719 metazoans are modified in S. officinalis, most likely due to either the morphological specifici- Editor: Michael Schubert, Laboratoire de Biologie ties of cephalopods or to their direct development. Some expected expression patterns du DeÂveloppement de Villefranche-sur-Mer, were missing (e.g. -
The Nephridium of Lumbricus and Its Blood- Supply; with Remarks on the Nephridia in Other Chsetopoda
THE NEPHRIDITJM OF LUMBRIOUS. 293 The Nephridium of Lumbricus and its Blood- supply; with Remarks on the Nephridia in other Chsetopoda. By W, Blaxland Benham, D.Sc. (Loud.), Anatomical Department, Oxford. With Plates XXIII—XXV. THE nephridium of the common earthworm has recently been the subject of a contribution by Dr. Groehlich (20), in which he remarks on various statements made by Gegenbaur in his classical paper on the subject, published in 1853 (19), in which he corrected the then prevailing view that the seg- mentally arranged tubes were respiratory, and suggested their excretory function. As several of Goehlich's statements are at variance with those of Gegenbaur I was led to look into the details of the organ, and I then found that on those points the more recent writer was in error, and that Gegenbaur's description is much more nearly correct than Goehlich's. In fact, I have not very much to add to the description of the earlier writer beyond matters of histological detail, and more especially the blood-supply, which Professor Lankester suggested that I should work out. The work was carried out in the Zoological Laboratory of University College during the past eighteen months. 294 W. BLAXLAND BENHAM. CONTENTS OF PAPER. 1. Nomenclature of the parts of the nephridium, and the course of the various regions. 2. Histology of the various regions, and suggestions as to their function. 3. Comparison with the nephridium in other genera. 4. The nephrostome of Perichseta malamaniensis, n. sp., and other genera. 5. Circulation in the nephridium. 6. The nephridium of Arenicola. -
Xxix. Problems of Nitrogen Catabolism in Invertebrates. Iii
XXIX. PROBLEMS OF NITROGEN CATABOLISM IN INVERTEBRATES. III. ARGINASE IN THE INVERTEBRATES, WITH A NEW METHOD FOR ITS DETERMINATION. BY ERNEST BALDWIN1. From the Biochemical Department, Cambridge. (Received November 12th, 1934.) ARGINASE was discovered in mammalian liver by Kossel and Dakin [1904, 1, 2] who showed that the products of its action are ornithine and urea. Since that time the enzyme has attracted a great deal of interest from many points of view, but for present purposes it is sufficient, without going into the history of the subject, to point out that until very recently it was generally supposed that a small proportion of the urea excreted by mammals arises by the action of the liver arginase upon ingested arginine. Krebs and Henseleit, however, brought forward convincing evidence [1932] for supposing that the whole of the urea so excreted is elaborated by means of a cyclical mechanism involving arginase. In the meantime a generalisation ofthe greatest comparative importance was made by Clementi [1914; 1915], who pointed out that arginase could be detected in the livers of animals having a ureotelic metabolism, but not in cases where the metabolism is uricotelic in character. Manderscheid [1933] has extended the work of Krebs and Henseleit [1932] to other vertebrates and found the same cyclical system operating in those having the ureotelic type of metabolism, thus providing an explanation for the empirical rule enunciated by Clementi. The distribution of arginase among vertebrate tissues has been carefully studied by a number of workers [Edlbacher, 1915; Hunter and Dauphinee, 1924, 1, 2; Edlbacher and Bonem, 1925] but the invertebrates have received scant attention.