The E3 Ubiquitin Ligase Nedd4/Nedd4l Is Directly Regulated by Microrna 1 Jun-Yi Zhu1, Amy Heidersbach2,3, Irfan S
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© 2017. Published by The Company of Biologists Ltd | Development (2017) 144, 866-875 doi:10.1242/dev.140368 RESEARCH ARTICLE The E3 ubiquitin ligase Nedd4/Nedd4L is directly regulated by microRNA 1 Jun-yi Zhu1, Amy Heidersbach2,3, Irfan S. Kathiriya2,4, Bayardo I. Garay2,4, Kathryn N. Ivey2,3, Deepak Srivastava2,3, Zhe Han1,* and Isabelle N. King2,3,* ABSTRACT homologous to the E6-AP C-terminal (HECT) domain (reviewed by miR-1 is a small noncoding RNA molecule that modulates gene Rotin and Kumar, 2009). Although its regulation is relatively unexplored, expression in heart and skeletal muscle. Loss of Drosophila miR-1 Nedd4 activity is governed by multiple post-translational modifications produces defects in somatic muscle and embryonic heart and an array of co-factors (reviewed by Yang and Kumar, 2010). development, which have been partly attributed to miR-1 directly MicroRNA 1 (miR-1) is evolutionarily conserved from flies to targeting Delta to decrease Notch signaling. Here, we show that humans and is crucial for normal cardiac development and function overexpression of miR-1 in the fly wing can paradoxically increase (Heidersbach et al., 2013; Ivey et al., 2008; King et al., 2011; Kwon Notch activity independently of its effects on Delta. Analyses of et al., 2005; Sokol and Ambros, 2005; Wei et al., 2014). Drosophila potential miR-1 targets revealed that miR-1 directly regulates the miR-1 negatively regulates the Notch ligand Delta in the developing 3′UTR of the E3 ubiquitin ligase Nedd4. Analysis of embryonic and Drosophila wing, producing a loss of Notch activity (Kwon et al., adult fly heart revealed that the Nedd4 protein regulates heart 2005). Using a GAL4-UAS-based system in the fly wing, we identified development in Drosophila. Larval fly hearts overexpressing miR-1 genetic pathways that intersect with miR-1 (King et al., 2011). This have profound defects in actin filament organization that are partially system is particularly adept at detecting interactions between miR-1 rescued by concurrent overexpression of Nedd4. These results and the Notch pathway due to the importance of Notch signaling in indicate that miR-1 and Nedd4 act together in the formation and actin- wing-vein patterning. Specifically, increased Notch signaling results dependent patterning of the fly heart. Importantly, we have found that in a loss of vein structures, whereas decreased Notch signaling results the biochemical and genetic relationship between miR-1 and the in thickened, tortuous veins (de Celis and García-Bellido, 1994). mammalian ortholog Nedd4-like (Nedd4l) is evolutionarily conserved Unexpectedly, we observed a progressive loss of vein structures as in the mammalian heart, potentially indicating a role for Nedd4L in miR-1 levels rose, suggesting that, in certain contexts, miR-1 can mammalian postnatal maturation. Thus, miR-1-mediated regulation promote Notch signaling. Given this unexpected result, we speculated of Nedd4/Nedd4L expression may serve to broadly modulate the that in addition to its effects on Delta, miR-1 also governs the activity trafficking or degradation of Nedd4/Nedd4L substrates in the heart. of a negative regulator (or regulators) of the Notch pathway. To identity this miR-1 target, we focused on a particular vein phenotype KEY WORDS: miR-1, Nedd4, Nedd4L, Nedd4-2, Heart that results in a truncated third long vein (L3). INTRODUCTION RESULTS Notch signaling regulates many aspects of cell differentiation and Overexpression of miR-1 in the wing can increase Notch specification. In the developing Drosophila wing, Notch cooperates signaling with the Hedgehog (Hh) pathway to form and pattern the anterior- Using the decapentaplegic-GAL4 driver (dpp-GAL4) system, we posterior (AP) boundary (Casso et al., 2011). Several E3 ubiquitin expressed Drosophila miR-1 specifically in the AP organizer of the ligases assure that Notch and its ligands properly migrate from the cell wing imaginal disc (dpp>miR-1) (Brand and Perrimon, 1993; King surface to various endocytic compartments for activation (e.g. Deltex, et al., 2011). Capitalizing on the temperature responsiveness of the Mindbomb1). By contrast, the E3 ubiquitin ligase Nedd4 (neural GAL4-UAS system, we placed the dpp>miR-1 line at 20°C or 22°C precursor cell-expressed, developmentally downregulated 4) negatively and scored the wings for changes in vein patterning and L3/L4- regulates Notch by directing it to the lysosome (Ingham et al., 2004; intervein distance. As miR-1 expression increased, the wing veins reviewed by Rotin et al., 2000; Sakata et al., 2004). Nedd4, along with thickened and intervein distance decreased progressively, consistent its family of proteins, has a phospholipid-binding C2 domain, two to with miR-1 repressing the Notch ligand Delta in the AP organizer. four WW domains that recognize substrates, and a catalytic domain Unexpectedly, at 22°C, when miR-1 expression is highest, a significant number of flies were missing the distal region of L3, a wing phenotype similar to that produced by increased Notch 1Children’s National Medical Center, Washington, DC 20010, USA. 2Gladstone signaling (Fig. 1A, lower panel; Fig. 1B). Institute of Cardiovascular Disease, San Francisco, CA 94158, USA. 3Department of Pediatrics, University of California, San Francisco, CA 94143, USA. 4Department Next, we focused on the molecular mechanism of this truncation. of Anesthesia and Perioperative Care, University of California, San Francisco, CA To determine whether the distal loss of L3 under conditions of high 94143, USA. miR-1 expression reflected increased Notch signaling, we genetically *Authors for correspondence ([email protected]; crossed alleles of positive and negative regulators of the Notch [email protected]) pathway. All parental lines had wild-type L3-vein morphology (data not shown). When mated to dpp>miR-1 flies, fly lines containing J.Z., 0000-0002-4517-101X; D.S., 0000-0002-3480-5953; Z.H., 0000-0002- 5177-7798; I.N.K., 0000-0002-3182-7540 loss-of-function alleles of positive regulators of Notch (i.e. Notch, deltex, Suppresssor of Hairless) showed a variable loss of intervein Received 1 June 2016; Accepted 10 January 2017 distance, indicating a genetic interaction with miR-1 (Fig. S1A). DEVELOPMENT 866 RESEARCH ARTICLE Development (2017) 144, 866-875 doi:10.1242/dev.140368 Fig. 1. Misexpression of miR-1 in the anterior-posterior organizer causes a derepression of the Notch pathway. (A) Representative wings (left) and schematic of wing phenotypes are shown (right). Shaded areas indicate regions of dpp- GAL4 activity, such that miR-1 is overexpressed in the dpp>miR-1 fly line. (B) Quantification of dpp>miR-1 progeny lacking the distal region of L3 at different temperatures. The UAS-GAL4 system allows titration of expression by temperature manipulation. n, number of progeny scored. (C) A simplified schematic of Notch repression. In the nucleus, Notch associates with its DNA-binding partner Suppressor of Hairless [Su(H)] to activate downstream target genes, some of which repress Notch signaling in a negative-feedback loop. (D) Percentage of progeny with a truncated L3 by genotype when crossed with the dpp>miR-1 line at 18°C. At this temperature, L3 forms normally in the control dpp>miR-1 line and loss of the L3-L4 intervein distance predominates. n, number of progeny scored. *P<0.001. Gro, Groucho; Gsc, Goosecoid; H, hairless. However, none of these alleles generated flies that lacked the distal formation. From these results, we concluded that the distal loss of L3 region of L3, suggesting that reductions in the gene dose of Notch results from de-repression of the Notch pathway and reflects an effectors were not responsible for the shortening of L3. epistatic relationship between miR-1 and Notch repressors. Dysregulation of Delta ubiquitylation or expression does not Truncation of L3 in dpp>miR-1 flies is not due to reduce L3 length phosphorylation of Groucho by receptor tyrosine kinases To determine whether dysregulation of Delta caused the loss of L3 Loss-of-function alleles of groucho, hairless or goosecoid could structures, we manipulated the relative amounts of active Delta with impair L3 formation by genetically interacting with a separate mutants of mindbomb1 (mib1) and UAS lines expressing wild-type genetic pathway that is also required for vein formation in the wing. or dominant-negative Delta (UAS-Delta and UAS-DeltaD/N, For example, epidermal growth factor receptor (EGFR) signaling respectively). Mib1 facilitates the activation of Delta through modulates Notch activity through phosphorylation of Groucho ubiquitylation and subsequent endocytosis of the ligand (Itoh et al., mediated by tyrosine receptor kinase (Hasson et al., 2005). To 2003). Interestingly, reduced levels of mib1 did not affect the determine whether the length of L3 is sensitive to EGFR activity, we dpp>miR-1 phenotype, suggesting that the loss of L3 is not sensitive tested effectors of EGFR signaling, both positive [e.g. Spitz (spi), to the level of Mib1 expression in this system (Fig. S1B). Likewise, Star (S), Rhomboid (Rho), Vein (vn) and Roughoid (ru)] and when crossed with the dpp>miR-1 line, neither the UAS-Delta nor the negative [e.g. Knot (also known as Collier) (kn), Argos (aos)]. UAS-DeltaD/N lines produced offspring with L3 truncation (Fig. S1B). Isolated alleles of S, Rho, ru, spi, vn, aos,orkn were crossed with the Wings overexpressing both miR-1 and DeltaD/N hadathickenedand dpp>miR-1 line. Scoring of the genetically relevant progeny did not tortuous L3; however, the most distal region of L3 could not be reliably reveal a genetic interaction between the EGFR pathway and miR-1 visualized, as the wings were globally deformed (data not shown). (Fig. S2). However, their interaction was genetically enhanced These results suggest that miR-1-mediated reduction of Delta or gross when fly lines were deficient in ED207 and BSC289.