Exercise 8 Echinodermata: Observation and Classification of Specimens
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Systematic Comparison of Sea Urchin and Sea Star Developmental Gene Regulatory Networks Explains How Novelty Is Incorporated in Early Development
ARTICLE https://doi.org/10.1038/s41467-020-20023-4 OPEN Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development Gregory A. Cary 1,3,5, Brenna S. McCauley1,4,5, Olga Zueva1, Joseph Pattinato1, William Longabaugh2 & ✉ Veronica F. Hinman 1 1234567890():,; The extensive array of morphological diversity among animal taxa represents the product of millions of years of evolution. Morphology is the output of development, therefore phenotypic evolution arises from changes to the topology of the gene regulatory networks (GRNs) that control the highly coordinated process of embryogenesis. A particular challenge in under- standing the origins of animal diversity lies in determining how GRNs incorporate novelty while preserving the overall stability of the network, and hence, embryonic viability. Here we assemble a comprehensive GRN for endomesoderm specification in the sea star from zygote through gastrulation that corresponds to the GRN for sea urchin development of equivalent territories and stages. Comparison of the GRNs identifies how novelty is incorporated in early development. We show how the GRN is resilient to the introduction of a transcription factor, pmar1, the inclusion of which leads to a switch between two stable modes of Delta-Notch signaling. Signaling pathways can function in multiple modes and we propose that GRN changes that lead to switches between modes may be a common evolutionary mechanism for changes in embryogenesis. Our data additionally proposes a model in which evolutionarily conserved network motifs, or kernels, may function throughout development to stabilize these signaling transitions. 1 Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA. -
(Echinodermata: Holothuroidea) from the Latest Cretaceous Of
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universität München: Elektronischen Publikationen 285 Zitteliana 89 Short Communication First report of sea cucumbers (Echinodermata: Holothuroidea) from the latest Cretaceous of Paläontologie Bayerische Bavaria,GeoBio- Germany & Geobiologie Center Staatssammlung 1,2,3 LMU München für Paläontologie und Geologie LMUMike MünchenReich 1 n München, 01.07.2017 SNSB - Bayerische Staatssammlung für Paläontologie und Geologie, Richard-Wagner-Straße 10, 80333 Munich, Germany 2 n Manuscript received Ludwig-Maximilians-Universität München, Department für Geo- und Umweltwissenschaften, 30.12.2016; revision ac- Paläontologie und Geobiologie, Richard-Wagner-Straße 10, 80333 Munich, Germany 3 cepted 21.01.2017 GeoBio-Center der Ludwig-Maximilians-Universität München, Richard-Wagner-Straße 10, 80333 Munich, Germany n ISSN 0373-9627 E-mail: [email protected] n ISBN 978-3-946705-00-0 Zitteliana 89, 285–289. Key words: fossil Holothuroidea; Cretaceous; Maastrichtian; Bavaria; Germany Schüsselwörter: fossile Holothuroidea; Kreide; Maastrichtium; Bayern; Deutschland The Bavarian Gerhardtsreit Formation (‶Gerhardts- 1993; Smith 2004) due to different reasons (Reich reiter Mergel″ / ‶Gerhardtsreiter Schichten″; cf. 2013). There are nearly 1,700 valid extant sea cucum- Böhm 1891; Hagn 1960; Wagreich et al. 2004), also ber species (Smiley 1994; Kerr 2003; Paulay pers. known as Gerhartsreit Formation (‶Gerhartsreiter comm.) known worldwide. The fossil record (since Schichten″; Hagn et al. 1981, 1992; Schwarzhans the Middle Ordovician; Reich 1999, 2010), by con- 2010; Pollerspöck & Beaury 2014) or ‶Gerhards- trast, is discontinuous in time and recorded ranges reuter Schichten″ (Egger 1899; Hagn & Hölzl 1952; of species with around 1,000 reported forms (Reich de Klasz 1956; Herm 1979, 2000) is exposed in Up- 2013, 2014, 2015b) since the early 19th century. -
Aspects of Life Mode Among Ordovician Asteroids: Implications of New Specimens from Baltica
Aspects of life mode among Ordovician asteroids: Implications of new specimens from Baltica DANIEL B. BLAKE and SERGEI ROZHNOV Blake, D.B. and Rozhnov, S. 2007. Aspects of life mode among Ordovician asteroids: Implications of new specimens from Baltica. Acta Palaeontologica Polonica 52 (3): 519–533. A new genus and species of Asteroidea (Echinodermata), Estoniaster maennili, is described from the Upper Ordovician (Caradocian) of Estonia; it is similar to the western European genus Platanaster and the North American Lanthanaster and an as yet unpublished new genus. Specimens of Urasterella? sp. and Cnemidactis sp. are recognized from the Middle Ordovician of northwest Russia; although similar to known species, incomplete preservation precludes more precise tax− onomic assessment. Asteroids are important in many existing marine communities, and in spite of a meager fossil record, diversity suggests they were important in the early Paleozoic as well. Some debate has centered on arm flexibility in early asteroids, which bears on their roles in their communities. Parallels in ambulacral series arrangement between Ordovician and extant species and presence of an ambulacral furrow indicate similar broad ranges of motion and therefore potentially parallel ecologic roles. Many factors might have contributed to the differences between ancient and extant ambulacral ar− ticulation, including changes in positioning of a part of the water vascular system, changes in predation and bioturbation pressures, and taphonomic events that obscure skeletal details. Key words: Echinodermata, Asteroidea, functional morphology, Ordovician, Baltica. Daniel B. Blake [[email protected]], Department of Geology, University of Illinois, 1301 W. Green St., Urbana 61801, IL, USA; Sergei Rozhnov [[email protected]], Paleontological Institute, Russian Academy of Sciences, Profsoyusnaya 123, Mos− cow, 117647, Russia. -
Biology of Echinoderms
Echinoderms Branches on the Tree of Life Programs ECHINODERMS Written and photographed by David Denning and Bruce Russell Produced by BioMEDIA ASSOCIATES ©2005 - Running time 16 minutes. Order Toll Free (877) 661-5355 Order by FAX (843) 470-0237 The Phylum Echinodermata consists of about 6,000 living species, all of which are marine. This video program compares the five major classes of living echinoderms in terms of basic functional biology, evolution and ecology using living examples, animations and a few fossil species. Detailed micro- and macro- photography reveal special adaptations of echinoderms and their larval biology. (THUMBNAIL IMAGES IN THIS GUIDE ARE FROM THE VIDEO PROGRAM) Summary of the Program: Introduction - Characteristics of the Class Echinoidea phylum. spine adaptations, pedicellaria, Aristotle‘s lantern, sand dollars, urchin development, Class Asteroidea gastrulation, settlement skeleton, water vascular system, tube feet function, feeding, digestion, Class Holuthuroidea spawning, larval development, diversity symmetry, water vascular system, ossicles, defensive mechanisms, diversity, ecology Class Ophiuroidea regeneration, feeding, diversity Class Crinoidea – Topics ecology, diversity, fossil echinoderms © BioMEDIA ASSOCIATES (1 of 7) Echinoderms ... ... The characteristics that distinguish Phylum Echinodermata are: radial symmetry, internal skeleton, and water-vascular system. Echinoderms appear to be quite different than other ‘advanced’ animal phyla, having radial (spokes of a wheel) symmetry as adults, rather than bilateral (worm-like) symmetry as in other triploblastic (three cell-layer) animals. Viewers of this program will observe that echinoderm radial symmetry is secondary; echinoderms begin as bilateral free-swimming larvae and become radial at the time of metamorphosis. Also, in one echinoderm group, the sea cucumbers, partial bilateral symmetry is retained in the adult stages -- sea cucumbers are somewhat worm–like. -
Cretaceous Fossils from the Chesapeake and Delaware Canal
Cretaceous S;cial Publication No. 18 Fossils from the Chesapeake and Delaware Canal A Guide for Students and Collectors Edward M. Lauginiger / /~ / CRETACEOUS FOSSILS FROM THE CHESAPEAKE AND DELAWARE CANAL: A GUIDE FOR STUDENTS AND COLLECTORS By Edward M. Lauginiger Biology Teacher Academy Park High School Sharon Hill, Pennsylvania September 1988 Reprinted 1997 CONTENTS Page INTRODUCTION. • 1 ACKNOWLEDGMENTS 2 PREVIOUS STUDIES. 3 FOSSILS AND FOSSILIZATION 5 Requirements for Fossilization 6 Types of Fossilization 7 GEOLOGY •• 10 CLASSIFICATON OF FOSSILS. 12 Kingdom Monera • 13 Kindgom Protista 1 3 Kingdom Plantae. 1 4 Kingdom Animalia 15 Phylum Porifera 15 Phylum Cnidaria (Coelenterata). 16 Phylum Bryozoa. 16 Phylum Brachiopoda. 17 Phylum Mollusca • 18 Phylum Annelida •. 22 Phylum Arthropoda • 23 Phylum Echinodermata. 24 Phylum Chordata 24 COLLECTING LOCALITIES 28 FOSSIL CHECK LIST 30 BIBLIOGRAPHY. 33 PLATES. ••• 39 iii FIGURES Page Figure 1 • Index map of the Chesapeake and Delaware Canal Area. .. .. 2 Figure 2. Generalized stratigraphic column of the formations exposed at the C & D Canal. 11 Figure 3. Foraminifera 14 Figure 4. Porifera 16 Figure 5. Cnidaria 16 Figure 6. Bryozoa. 17 Figure 7. Brachiopoda. 18 Figure 8. Mollusca-Gastropoda. 19 Figure 9. Mollusca-Pelecypoda. 21 Figure 10. Mollusca-Cephalopoda 22 Figure 11. Annelida . 22 Figure 12. Arthropoda 23 Figure 13. Echinodermata. 25 Figure 1 4. Chordata . 27 Figure 1 5. Collecting localities at the Chesapeake and Delaware Canal . ... .. 29 v CRETACEOUS FOSSILS FROM THE CHESAPEAKE AND DELAWARE CANAL: A GUIDE FOR STUDENTS AND COLLECTORS Edward M. Lauginiger INTRODUCTION Fossil collectors have been attracted to Delaware since the late 1820s when the excavation of the Chesapeake and Delaware (C&D) Canal first exposed marine fossils of Cretaceous age (Fig. -
GY 112L Earth History
GY 112L Earth History Lab 11 The Mesozoic: Part Two GY 112L Instructors: Douglas Haywick, James Connors, Mary Anne Connors Department of Earth Sciences, University of South Alabama Fifth Edition: August 2009© The Fine Print Contents of these lab exercises are the intellectual property of the authors, particularly Dr. Doug Haywick. Contents cannot be reproduced outside of the University of South Alabama “family” (faculty and students) without the permission of D. Haywick. Internet users can seek this permission by contacting Dr. Haywick through the web address provided below. This manual is constantly being updated and occasionally, even improved. Typos, grammatical errors and sections that make no sense whatsoever may, or may not, be intentional. If you find an error, show it to your instructor. You may get bonus points. More likely you will be told to go away The recipes that are included in some sections are intended to prove that you can eat anything as long as you serve it with plenty of ketchup. Neither Haywick, nor the Connors are responsible for any food poisoning that might occur if you actually try them. http:/www.southalabama.edu/geology/haywick 1 Week Eleven The Mesozoic, Part Two: Molluscs (Cephalopods), Echinoderms and Alabama Stratigraphy Background: Well the good news is that we are rapidly approaching the end of this course. The bad news is that we are rapidly approaching the end of this course and we still have several important animal groups to consider. When we last visited the molluscs two weeks ago, we only had time to consider the gastropods and bivalves. -
ECHINODERM TRANSCRIPTOMICS by Gregorio Villaflor Linchangco
ECHINODERM TRANSCRIPTOMICS by Gregorio Villaflor Linchangco Junior A dissertation submitted to the faculty of The University of North Carolina at Charlotte in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Bioinformatics and Computational Biology Charlotte 2018 Approved by: ______________________________ Dr. Daniel A. Janies ______________________________ Dr. Robert R. Reid ______________________________ Dr. Xinghua Shi ______________________________ Dr. Jessica Schlueter ______________________________ Dr. Ian Marriott ©2018 Gregorio Villaflor Linchangco Junior ALL RIGHTS RESERVED ABSTRACT GREGORIO VILLAFLOR LINCHANGCO JUNIOR. Echinoderm Transcriptomics. (Under the direction of DR. DANIEL A. JANIES) Tissue regeneration and biomineralization are expressed to a diverse extent across metazoans and their life stages. The potential for repair and regrowth in adult stages varies widely within phyla, class and species. For instance, few adult human tissues can regenerate. In contrast, members of the phylum Echinodermata demonstrate remarkable regenerative capabilities. Holothuroids like the sea cucumber can regenerate vital organs after evisceration, while the echinoid sea urchin lacks this ability. Echinoderms have been model organisms for studies in embryonic developmental biology due to their abundant gametes and often clear embryos. More recently, adult echinoderms have emerged as models in regenerative studies. The ability of echinoderms to repair and regrow body parts as a response to injury or predation is valuable in studies of the basic mechanisms that underpin regeneration. The heterogeneity of regenerative capabilities within echinoderm classes provides insights into how regeneration is gained and lost. From an evolutionary standpoint, echinoderms share a common ancestor with chordates which include humans. Resolving the phylogenetic relationships of echinoderms provides a platform to understand the gain and loss of regeneration and may have future applications in medicine. -
Glossary of Terms for Echinoderms
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ GLOSSARY OF TERMS FOR ECHINODERMS (taken from the SERTC Echinoderm Taxonomy Workshop manual) ABACTINAL. The area of the body opposite the mouth. ABORAL. In a direction away from the mouth; the part of the body opposite the mouth. ACCESSORY DORSAL ARM PLATE. In some ophiuroids, one or several small, symmetrically arranged plates that are inserted between the dorsal arm plate and the lateral arm plate. ACTINAL. The surface of the body that contains the mouth. ADAMBULACRAL. Towards, or immediately adjacent to, an ambulacrum. ADAPICAL. In echinoids, towards the highest part of the test. ADORAL SHIELDS. In ophiuroids, a pair of plates, one of which is found at each side of the oral shield. ADPRESSED. Squeezed against. The adpressed arm spines of ophiuroids are flattened against the sides of the arm. AMBULACRAL GROOVE. In asteroids, the groove on the oral (ventral) surface of the arm, in which the tube feet are carried. Its sides are formed by the adambulacral plates, and it is roofed by the ambulacral plates. In crinoids, a furrow on the oral (dorsal) surface of the pinnules, arms, and central body, which is lined with cilia and bordered by the tube feet. AMBULACRUM. A zone of the body that carries tube feet (pl. ambulacra). Echinoderms generally have 5 ambulacra. The midline of an ambulacrum is a radius. ANAL CONE (or TUBE). In crinoids and echinoids, a fleshy projection bearing the anus at its apex. ANCHOR. See OSSICLE TYPES. ANCHOR PLATE. See OSSICLE TYPES. -
General Characteristics and Classification of Echinodermata
General Characteristics and Classification of Echinodermata Dr. Rachna Sahay Assistant Professor, Dept. of Zoology Echinodermata word has been derived from : Echinos = Hedge hog/ Uneven/ Rough or Spiny Derma = Skin Animals having uneven or spiny skin are called Echinodermata Sea Star General Characteristics 1800 living species are found in all over the world. Habitat- All the existing echinoderms are marine. They generally live at the bottom of the sea. Most of them are pelagic (free swimming in open water) and few are sessile (attached to the substratum). Body form- It varies, some are star like, some are spherical or cylindrical. It is unsegmented and body lacks head. Many echinoderms bear spines and pincer like pedicillariae. Spines are protective in function. The pedicillariae keep the body surface clear of debris and minute orgnisms. Symmetry The larva is bilateral but adults are pentamerous radial symmetrical. Body parts are arranged in five or multiple of five. Body Wall Epidermis is single layered and ciliated. In many echioderms there is endoskeleton of calcareous plates in the dermis, which are mesodermal in origin. Ambulacral System It is characteristic feature of this phylum. This system is of coelomic origin. It consists of a chain of different tubes or canals attached with each other. It starts from a perforated plate called madreporite and ends into tube feet. All the canals are filled with the fluid or sea water and subsequently helps in locomotion. Digestive System Usually complete digestive system is present, having two stomach cardiac and pyloric stomach. Out of which cardiac stomach can come out of the mouth during the capture of the prey. -
Chapter 29: Echinoderms and Invertebrate Chordates
Echinoderms and Chapter 29 Organizer Invertebrate Chordates Refer to pages 4T-5T of the Teacher Guide for an explanation of the National Science Education Standards correlations. Teacher Classroom Resources Activities/FeaturesObjectivesSection MastersSection TransparenciesReproducible Reinforcement and Study Guide, pp. 127-129 L2 Section Focus Transparency 71 L1 ELL Section 29.1 1. Compare similarities and differences MiniLab 29-1: Examining Pedicellariae, p. 788 Section 29.1 among the classes of echinoderms. Inside Story: A Sea Star, p. 790 Critical Thinking/Problem Solving, p. 29 L3 Basic Concepts Transparency 50 L2 ELL Echinoderms 2. Interpret the evidence biologists have Problem-Solving Lab 29-1, p. 792 Echinoderms BioLab and MiniLab Worksheets, p. 129 L2 Basic Concepts Transparency 51 L2 ELL National Science Education for determining that echinoderms are Investigate BioLab: Observing Sea Urchin Laboratory Manual, pp. 205-210 L2 P Standards UCP.1-5; A.1, A.2; close relatives of chordates. Gametes and Egg Development, p. 800 Content Mastery, pp. 141-142, 144 L1 P 1 Physics Connection: Hydraulics of Sea Stars, C.3, C.5, C.6 (1 session, /2 P block) p. 802 P Reinforcement and Study Guide, p. 130 L2 P Section Focus Transparency 72 L1 ELL Section 29.2 LS Concept Mapping, p. 29 L3 ELL Reteaching Skills Transparency 43PL1 ELL P LS Invertebrate Critical Thinking/Problem Solving, p. 29 L3P P Chordates LS Section 29.2 3. Summarize the characteristics of MiniLab 29-2: Examining a Lancelet, p. 797 BioLab and MiniLab Worksheets, pp.P 130-132LS LSL2 P chordates. Inside Story: A Tunicate, p. 798 Content Mastery, pp. -
Phylogenomic Analyses of Echinoid Diversification Prompt a Re
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.19.453013; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Phylogenomic analyses of echinoid diversification prompt a re- 2 evaluation of their fossil record 3 Short title: Phylogeny and diversification of sea urchins 4 5 Nicolás Mongiardino Koch1,2*, Jeffrey R Thompson3,4, Avery S Hatch2, Marina F McCowin2, A 6 Frances Armstrong5, Simon E Coppard6, Felipe Aguilera7, Omri Bronstein8,9, Andreas Kroh10, Rich 7 Mooi5, Greg W Rouse2 8 9 1 Department of Earth & Planetary Sciences, Yale University, New Haven CT, USA. 2 Scripps Institution of 10 Oceanography, University of California San Diego, La Jolla CA, USA. 3 Department of Earth Sciences, 11 Natural History Museum, Cromwell Road, SW7 5BD London, UK. 4 University College London Center for 12 Life’s Origins and Evolution, London, UK. 5 Department of Invertebrate Zoology and Geology, California 13 Academy of Sciences, San Francisco CA, USA. 6 Bader International Study Centre, Queen's University, 14 Herstmonceux Castle, East Sussex, UK. 7 Departamento de Bioquímica y Biología Molecular, Facultad de 15 Ciencias Biológicas, Universidad de Concepción, Concepción, Chile. 8 School of Zoology, Faculty of Life 16 Sciences, Tel Aviv University, Tel Aviv, Israel. 9 Steinhardt Museum of Natural History, Tel-Aviv, Israel. 10 17 Department of Geology and Palaeontology, Natural History Museum Vienna, Vienna, Austria 18 * Corresponding author. -
Development of an Embryonic Skeletogenic Mesenchyme Lineage
Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms McCauley et al. McCauley et al. EvoDevo 2012, 3:17 http://www.evodevojournal.com/content/3/1/17 McCauley et al. EvoDevo 2012, 3:17 http://www.evodevojournal.com/content/3/1/17 RESEARCH Open Access Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms Brenna S McCauley, Erin P Wright, Cameron Exner, Chisato Kitazawa and Veronica F Hinman* Abstract Background: The mechanisms by which the conserved genetic “toolkit” for development generates phenotypic disparity across metazoans is poorly understood. Echinoderm larvae provide a great resource for understanding how developmental novelty arises. The sea urchin pluteus larva is dramatically different from basal echinoderm larval types, which include the auricularia-type larva of its sister taxon, the sea cucumbers, and the sea star bipinnaria larva. In particular, the pluteus has a mesodermally-derived larval skeleton that is not present in sea star larvae or any outgroup taxa. To understand the evolutionary origin of this structure, we examined the molecular development of mesoderm in the sea cucumber, Parastichopus parvimensis. Results: By comparing gene expression in sea urchins, sea cucumbers and sea stars, we partially reconstructed the mesodermal regulatory state of the echinoderm ancestor. Surprisingly, we also identified expression of the transcription factor alx1 in a cryptic skeletogenic mesenchyme lineage in P. parvimensis. Orthologs of alx1 are expressed exclusively within the sea urchin skeletogenic mesenchyme, but are not expressed in the mesenchyme of the sea star, which suggests that alx1+ mesenchyme is a synapomorphy of at least sea urchins and sea cucumbers.