Supplementary Table 1. Primer sequences used to perform Real-Time PCR

For CGGATTTGGTCGTATTGGG GAPDH Rev GCTTCCCGTTCTCAGCCTTG For GCTGCCCACCAATGTAGAGGA TAP1 Rev GGCGAAGCCCAGAAGTTTAGG For GGCGACAGTTCAGCCATCAC IFNg Rev TGTGGAGACCATCAAGGAAGACA ERAP2- For TCCAAACCAGCGGAAACCC Tot Rev CTGCTCCACAAGTCATCATTC For CCCAAGATGACAAGTAACATGCTC ERAP2FL Rev GGAAGCGCTCCTGTTGCAG For GAGATCTGTGGAATAGCCTGACC ERAP2SA Rev GGAAGCGCTCCTGTTGCAG

Supplemetary Table 2. analysed in the PCR array.

Symbol Name HSGenomic HSGenomic Hs18s Hs18s ABCB9 ATP-binding cassette, sub-family B (MDR/TAP), member 9 AP2M1 adaptor-related complex 2, mu 1 subunit AP3B1 adaptor-related protein complex 3, beta 1 subunit AP3M1 adaptor-related protein complex 3, mu 1 subunit B2M beta-2-microglobulin BLMH bleomycin hydrolase CALR calreticulin CAMK2A calcium/calmodulin-dependent protein kinase II alpha CANX calnexin CD1D CD1d molecule CD207 CD207 molecule, langerin CD209 CD209 molecule CD40 CD40 molecule, TNF receptor superfamily member 5 CD46 CD46 molecule, complement regulatory protein CD74 molecule, major histocompatibility complex, class II CD74 invariant chain CD86 CD86 molecule CDC42 cell division cycle 42 (GTP binding protein, 25kDa) CIITA class II, major histocompatibility complex, transactivator CLEC10A C-type lectin domain family 10, member A CREB1 cAMP responsive element binding protein 1 CTSB cathepsin B CTSD cathepsin D CTSE cathepsin E CTSL2 cathepsin L2 CTSS cathepsin S ERAP1 endoplasmic reticulum aminopeptidase 1 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, ERBB2 neuro/glioblastoma derived oncogene homolog (avian) FCGR2B Fc fragment of IgG, low affinity IIb, receptor (CD32) HFE hemochromatosis HLA-A major histocompatibility complex, class I, A HLA-B major histocompatibility complex, class I, B HLA-C major histocompatibility complex, class I, C HLA-DMA major histocompatibility complex, class II, DM alpha HLA-DMB major histocompatibility complex, class II, DM beta HLA-DOA major histocompatibility complex, class II, DO alpha HLA-DOB major histocompatibility complex, class II, DO beta HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 HLA-DPB1 major histocompatibility complex, class II, DP beta 1 HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 HLA-DRA major histocompatibility complex, class II, DR alpha HLA-DRB1 major histocompatibility complex, class II, DR beta 1 HLA-E major histocompatibility complex, class I, E HLA-F major histocompatibility complex, class I, F HLA-G major histocompatibility complex, class I, G HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 HSPA1A heat shock 70kDa protein 1A HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) ICAM1 intercellular adhesion molecule 1 ICOS inducible T-cell co-stimulator ICOSLG inducible T-cell co-stimulator ligand IFI30 interferon, gamma-inducible protein 30 IFNG interferon, gamma IRF2 interferon regulatory factor 2 IRF8 interferon regulatory factor 8 LAMP1 lysosomal-associated membrane protein 1 LAMP2 lysosomal-associated membrane protein 2 LAP3 leucine aminopeptidase 3 LGMN legumain LY75 lymphocyte antigen 75 MAPK14 mitogen-activated protein kinase 14 MR1 major histocompatibility complex, class I-related NPEPPS aminopeptidase puromycin sensitive OSCAR osteoclast associated, immunoglobulin-like receptor PDIA3 protein disulfide isomerase family A, member 3 PML promyelocytic leukemia PRKCD protein kinase C, delta PSAP prosaposin (prosome, macropain) subunit, beta type, 8 (large PSMB8 multifunctional peptidase 7) proteasome (prosome, macropain) subunit, beta type, 9 (large PSMB9 multifunctional peptidase 2) proteasome (prosome, macropain) activator subunit 1 (PA28 PSME1 alpha) PSME2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) ras-related C3 botulinum toxin substrate 1 (rho family, small GTP RAC1 binding protein Rac1) RFX5 regulatory factor X, 5 (influences HLA class II expression) RFXANK regulatory factor X-associated ankyrin-containing protein RFXAP regulatory factor X-associated protein RHOA ras homolog family, member A SOCS1 suppressor of cytokine signaling 1 STAT1 signal transducer and activator of transcription 1, 91kDa SYK spleen tyrosine kinase TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) TAPBP TAP binding protein (tapasin) TCP1 t-complex 1 TGFB1 transforming growth factor, beta 1 THPO thrombopoietin TLR2 toll-like receptor 2 TNFRSF17 tumor necrosis factor receptor superfamily, member 17 TPP2 tripeptidyl peptidase II UNC93B1 unc-93 homolog B1 (C. elegans)