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Canadian Journal of Earth Sciences

Endocranial morphology of the petalichthyid placoderm Ellopetalichthys scheii (Kiær 1915) from the Middle Devonian of Arctic Canada with remarks on the and neck joint morphology of placoderms

Journal: Canadian Journal of Earth Sciences

Manuscript ID cjes-2020-0005.R1

Manuscript Type: Article

Date Submitted by the 14-May-2020 Author:

Complete List of Authors: Castiello, Marco; Imperial College London - Silwood Park Campus Jerve, Anna; Uppsala Universitet Burton, Maria;Draft Imperial College London Friedman, Matt; University of Michigan Brazeau, Martin; Imperial College London, Life Sciences

Keyword: placoderm, Petalichthyida, braincase, Devonian, inner ear

Is the invited manuscript for consideration in a Special Not applicable (regular submission) Issue? :

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1 Endocranial morphology of the petalichthyid placoderm Ellopetalichthys scheii

2 (Kiær 1915) from the Middle Devonian of Arctic Canada, with remarks on the inner

3 ear and neck joint morphology of placoderms

4 Marco Castiello1, Anna Jerve1,2, Maria Grace Burton1, Matt Friedman3, Martin D Brazeau1,4*

5

6 1Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5

7 7PY, United Kingdom

8

9 2Department of Organismal Biology, Uppsala University, Norbyvägen 18A, 752 36, Uppsala, 10 Sweden Draft 11

12 3Museum of Paleontology and Department of Earth and Environmental Sciences, University of

13 Michigan, Ann Arbor, Michigan 48109-1079, United States of America

14

15 4Department of Earth Sciences, The Natural History Museum, Cromwell Road, London, SW7

16 5BD, United Kingdom

17

18 * Corresponding author. Department of Life Sciences, Imperial College London, Silwood

19 Campus, Buckhurst Road, Ascot SL5 7PY, United Kingdom; E-mail: [email protected]

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20 Abstract: Petalichthyid and “acanthothoracid” placoderms have taken pivotal positions in the

21 debate on placoderm—and, by extension, jawed —relationships owing to perceived

22 similarities with the jawless . Neurocranial characters are integral to current

23 hypotheses of early gnathostome relationships. Here, we describe the three-dimensionally

24 preserved neurocranial anatomy of the petalichthyid placoderm Ellopetalichthys scheii, from the

25 Middle Devonian (early Eifelian) of Ellesmere Island, Canada. Using X-ray computed

26 microtomography, we generated three-dimensional reconstructions of the endocranial surfaces,

27 orbital walls, and cranial endocavity. These reconstructions verify the absence of a crus

28 commune of the skeletal labyrinth and the complex shape of the petalichthyid endolympathic

29 duct. Details of the craniothoracic joint and occipital musculature fossae help resolve the

30 problematic comparative anatomy of theDraft occipital surface of petalichthyids. These new data

31 highlight similarities with arthrodire placoderms, consistent with older hypotheses of a sister-

32 group relationship between petalichthyids and that clade.

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35 Key words: placoderm, Petalichthyida, braincase, Devonian, inner ear

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42 Introduction

43 The Macropetalichthyida are a group of petalichthyid placoderm fishes characterized by a wide,

44 flat head, dorsolaterally facing eyes, and a broad, projecting snout. Their outward resemblance to

45 jawless osteostracan fishes—particularly in the structure of the brain cavity and orbit—places

46 them at the centre of debates about the monophyly of placoderms (Janvier 1996, Brazeau 2009,

47 Brazeau and Friedman 2014). However, most of our knowledge of the anatomy of the braincase

48 of petalichthyids relies on Stensiö’s (1925, 1969) descriptions of a single reference taxon,

49 Macropetalichthys Norwood and Owen. Stensiö’s initial (1925) accounts were based on three-

50 dimensionally preserved specimens, including one that was broken open with a hammer. These

51 descriptions were greatly augmented in 1969 with one of these specimens prepared

52 mechanically, revealing the external braincaseDraft and . Braincase morphology and brain

53 endocast details have long been key sources of phylogenetic data on early vertebrates. With the

54 advent of X-ray computed micro-tomography (XR-µCT, simply stated “CT” in text), there is a

55 growing wealth of comparative neurocranial data for early vertebrates. Understanding of

56 petalichthyid endocranial morphology and diversity beyond Macropetalichthys, as well as

57 corroboration of Stensiö’s reconstructions, is important for a robust understanding of both

58 placoderm and deep gnathostome phylogeny.

59 In this paper, we describe the braincase morphology of the type and only specimen of the

60 petalichthyid Ellopetalichthys scheii (Kiær 1915) from the Middle Devonian of Arctic Canada

61 using CT scanning. This specimen was first described by Kiær (1915) as Macropetalichthys

62 scheii and later redescribed by (Ørvig 1957) who placed it in the new genus Ellopetalichthys.

63 Ørvig distinguished Ellopetalichthys from Macropetalichthys on the basis of “the large size of

64 the orbital openings” (1957: p. 301), the posterior restriction of the endocranial ossification, and

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65 the “general shape” (1957: p. 301) of these ossifications. At the same time, Ørvig noted that

66 Ellopetalichthys most closely resembles Macropetalichthys among petalichthyids known at the

67 time. This apparently close relationship between these two genera means that three-dimensional

68 details of the braincase of Ellopetalichthys could provide improved comparative interpretations

69 of Macropetalichthys as well as for other petalichthyid neurocrania.

70 In this paper, we present new details of the endocranial anatomy of Ellopetalichthys

71 which we consider to be of likely phylogenetic utility. These include most of the endocranial

72 cavity and external structures obscured by matrix. The probable close relationships of

73 Macropetalichthys and Ellopetalicthys offer the opportunity to assess key aspects of Stensiö’s

74 (1969) reconstructions of the former. We use these new data to clarify the comparative and

75 functional morphology of the petalichthyidDraft head with a particular emphasis on the cranio-

76 thoracic joint (i.e. ‘neck joint’) and the skeletal labyrinth cavity. The former of these has only

77 seen rudimentary phylogenetic consideration and we add recommendations on how this

78 morphology can be represented as phylogenetic characters.

79

80 Materials and Methods

81 The holotype of Ellopetalychthys scheii (Kiær 1915) is held in the collections of the Natural

82 History Museum at the University of Oslo (NHMO) and catalogued as specimen A13047. As it

83 is the only specimen known, we simply refer to it here as Ellopetalichthys . It consists of an

84 incompletely preserved dermal roof and exposed posterior part of the basicranium. Most of

85 the pre-orbital part of the skull is missing, but the rest is well preserved and three dimensional.

86 material was cleaved off into the counterpart, which was not scanned in this study.

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87 According to Kiær (1915), the specimen was collected by Per Schei at Goose Fiord,

88 Ellesmere Island from Schei’s Dh zone. At the time of Ørvig’s resdescription, there was some

89 discrepancy in dating this zone and he considered it late Middle Devonian (Givetian). It is now

90 referred to the Baad Fiord Member of the Fiord Formation which, at Goose Fiord, is of

91 latest Emsian or Eifelian age on the basis of conodonts [serotinus to costatus zones in lower part;

92 patulus to kockelianus zones in the upper part, (Mayr and Packard 1994); approximately 397.8 to

93 388.3 Ma, according to Becker et al. (2012)].

94 We scanned the specimen at the Imaging and Analysis Centre at the Natural

95 History Museum in London using a Nikon Metrology HMX ST 225 X-ray micro-CT

96 scanner. The fossil was scanned at 165 kV and 170 µA, with a 0.1 mm thick copper filter (voxel

97 size 26.8 µm), to create 6284 X-ray projections.Draft The resulting tomographic dataset was

98 segmented and rendered in 3D using the software Mimics 18.01 (Materialise Technologielaan,

99 Leuven, Belgium). The endocranial cavities were segmented as both the perichondral ‘shell’ and

100 a virtual endocast. The endocast is presented here because it is more complete, as it was often

101 possible to model the endocast where a differential matrix infill contrasted with the surrounding

102 matrix, but where the perichondral shell itself was unresolved. The 3D models produced with

103 Mimics were imported in Blender (blender.org) for scientific image preparation. Tomographic

104 data, virtual 3D models and a photogrammetric model of NHMO A13047 are available on

105 figshare (10.6084/m9.figshare.11093345)

106

107 Systematic Palaeontology

108 Placodermi M’Coy (1848)

109 Petalichthyida Jaekel (1911)

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110 Macropetalichthyidae Eastman (1898)

111 Ellopetalichthys Ørvig 1957

112 DIAGNOSIS: As for type species.

113

114 Ellopetalichthys scheii (Kiær 1915)

115

116 DIFFERENTIAL DIAGNOSIS: (Emended after Ørvig, 1957) Macropetalichthyid placoderm with the

117 following characters: Distribution of skull roof plates and sensory lines identical to

118 Macropetalichthys from level of the anterior margin of the orbits to the posterior margin of the

119 skull (anterior parts unknown); tubercles are low, rounded as in Macropetalichthys; differs from

120 Epipetalichthys Stensiö, Lunaspis Broili,Draft Shearsbyaspis Young, and Wijdeaspis Obruchev in the

121 absence of any evident pattern of concentric or parallel ornament ridges. Apomorphic character

122 of the species: trapezoidal flanges of parachordal ossifications forming a broad, thin floor to the

123 cucullaris/parabranchial fossa; the flanges widest at anterior, spanning most of the width of the

124 fossa and taper out near the caudal end of the parachordal ossifications.

125

126 REMARKS: Ørvig’s (1957) original diagnosis mentions a suite of characters that are generally

127 found in macropetalichthyids and therefore do not uniquely identify a new genus. However, in

128 the remarks on the taxonomic act, he provides a set of differential characters with

129 Macropetalichthys. These character differentials (referred to in the introduction of the present

130 paper), are vaguely stated or relied on relative dimensions such as the orbit diameter. However,

131 the holotype of Ellopetalichthys is small compared to most specimens of Macropetalichthys

132 (Kiær 1915, Ørvig 1957). Differences in relative orbit diameter (presumably body size-

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133 standardized) as well as the extent and proportion of ossifications could easily be explained as

134 differences in the ontogenetic age of specimens. This potentially undermines the generic

135 distinction proposed by Ørvig. We conclude that only the “general shape of the posterior part of

136 the endocranium” of Ellopetalichthys (Ørvig 1957, p. 301) can be said to be unique among

137 petalichthyids on present evidence. We have retained this character, but described the shape

138 more precisely.

139

140 Description

141 Skull roof and sensory lines

142 The skull is anteroposteriorly elongated,Draft with a high convex profile, and possesses large 143 orbits that open dorsolaterally (Figs. 1, 2). The dorsal side of the skull roof is broken off into the

144 counterpart, leaving only the impression of the internal surface of the bones in many areas as

145 well as exposing some of the underlying endoskeleton (Fig. 1B). Preserved dermal ornament

146 consists of low tubercles, similar to Macropetalichthys. Our CT data reveal for the first time the

147 positions of the endolymphatic duct foramina (Figs. 1B, 2). These are located in the anterior

148 paranuchal plate, immediately medial to the junction of the posterior pit line and the main lateral

149 line (Figs. 1A, 1B), as in most other petalichthyids. CT models corroborate the descriptions of

150 the sensory line system by Kiær (1915) and Ørvig (1957) (Fig. 1), but cannot resolve the dermal

151 bone boundaries and thus offer no contrasts with previous descriptions.

152 Endocranium

153 Apart from the exposed posterior portion of the ventral surface of the endocranium

154 described by Kiær (1915) and Ørvig (1957), endocranial structure in Ellopetalichthys is

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155 otherwise unknown. CT scanning reveals additional details obscured by matrix or ablated by

156 preparation. Most importantly, it provides details of the cranial cavity and canals (Figs. 1-6). The

157 braincase is incompletely to weakly ossified in the areas not exposed by mechanical preparation.

158 As in many petalichthyids (Stensiö 1925, 1969, Young 1978) the posterior and occipital portion

159 of the braincase is more strongly mineralised, while the orbital and antorbital regions are

160 incompletely mineralised.

161 Orbital region

162 The orbits are dorsolaterally oriented (Figs. 1A, 1B, 2), as in other petalichthyids. Only the

163 posterolateral wall of each orbit can be partially reconstructed (Figs. 1-4). Preservation of this 164 area is limited, making it difficult to determineDraft the presence and arrangement of foramina for 165 nerves and blood vessels. Part of the posterior wall of the posteroventral myodome (Castiello and

166 Brazeau 2018) is visible in the left orbit (Myodome 6, Figs. 2, 3). It is pierced by a small canal of

167 uncertain identity (?Pituitary vein canal, Fig. 3).

168 Postorbital region

169 The region of the braincase immediately posterior to the orbits—between the presumed

170 transverse otic processes—is not well preserved. However, posterior to this the endocranial

171 surface is more robustly mineralised (Figs. 1-5). Along the lateral sides of the specimen, the

172 vagal process is bifurcated into anterior and posterior processes (Fig. 3) as in acanthothoracids

173 (Ørvig 1975) and many arthrodires (Stensiö 1963, Goujet 1984a). The process bounds the very

174 large paravagal fossa (Fig. 3), as in Macropetalichthys (Stensiö 1969, Young 1980). The broad

175 paravagal fossa is bisected by a low, transverse accessory ridge originating immediately

176 posterior to the anterior vagus nerve opening (Fig. 3), again corresponding to the condition in

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177 Macropetalichthys. A small foramen located on the anterior wall of the paravagal fossa probably

178 represents that for the glossopharyngeal nerve (Figs. 3-4).

179 As in Macropetalichthys (Stensiö 1925, 1969), there are two broad, posteriorly facing

180 openings at the position where the parachordals meet the basicranium (Fig. 3). These were

181 identified by Stensiö (1969) as having carried both the lateral dorsal aorta and the secondary

182 jugular vein, an interpretation consistent with that of Young (1978, 1980). As there are no

183 perichondrally ossified canals leading from these openings their precise course is not possible to

184 reconstruct. In other macropetalichthyids, the aortic canals are reconstructed as connecting to

185 the paravagal fossa. A candidate efferent opening can be seen on the right side of the specimen 186 (Fig. 3). Although no corresponding openingDraft appears on the left side of the 3D model (Fig. 3), 187 we note that this area is not ossified in the specimen (see photogrammetric model in the data

188 archive linked to in the Methods section).

189 Otico-occipital region

190 CT data partially corroborate Ørvig’s (1957) original interpretation of the otico-occipital

191 region of Ellopetalichthys, but also offer new details. According to Ørvig (1957), the otico-

192 occipital area consists of two distinct structures: a flat and broad anterior median bone (Ørvig

193 1957, text-fig. 7; Oc.a), and a long and narrow, stalk-like posterior ossification (Ørvig 1957, text-

194 fig. 7; Oc.p). We confirm the presence of two distinct ossifications but find that they are joined

195 by thin web of perichondral bone that appears to be punctuated by unmineralized gaps. The two

196 ossifications meet at the level of the posterior paravagal processes. The straight posterior vagal

197 process in Ellopetalichthys projects laterally at a right angle to the long axis of the skull. The

198 parachordals are long and narrow: together they are less than half the width of the basicranium,

199 resulting in a condition described as ‘stalk-shaped’ in phylogenetic character lists (Giles et al.

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200 2015). These ossifications bear broad lateral flanges or laminae that taper caudally towards the

201 occipital glenoids. These flanges form a broad shelf, defining a substantial ‘floor’ to the

202 parabranchial (Goujet 1984a) fossa (Figs. 3-5).

203 The parabranchial fossae are extremely large in comparison to those of other placoderms.

204 They are highly vaulted and so broad they nearly come into contact above the parachordal

205 processes, separated only by a narrow supra-occipital septum (Fig. 2). Ellopetalichthys, like

206 Wijdeaspis warroonensis (Young 1978), differs from Stensiö’s (1969) description of

207 Macropetalichthys in that the parabranchial (or cucullaris) fossa is roofed by perichondral bone

208 instead of dermal bone. However, Young’s (1980) revised reconstruction of Macropetalichthys 209 includes an endochondral roof over thisDraft part of the skull, suggesting doubts about this aspect of 210 Stensiö’s reconstruction. A pair of unidentified grooves is located in the endochondral space

211 above and behind the parabranchial fossa (Fig. 2). These grooves extend anteroposteriorly on the

212 mesial part of the dorsal surface of the fossa (Fig. 2).

213 The morphology of the occipital area and neck joint of Ellopetalichthys in our 3D models

214 (Fig. 5) largely agrees with Stensiö’s reconstruction (1969, fig. 83). Differences in the

215 distribution of dermal and perichondral bone between Stensiö’s figure and our 3D models likely

216 arise from an unclear distinction between these tissues in the tomograms. In posterior view, the

217 dorsal occipital margin has a high, parabolic profile (Fig. 5). Following this margin is a robust,

218 arch-shaped platform, corresponding to the insertion area of the levator muscles (Fig. 5). A series

219 of unidentified canals extends rostro-caudally through the space inside of this arch (?Blood

220 vessel canals, Fig. 2). This arch is bounded laterally by deep para-articular processes (Figs. 1C,

221 3, 5). There is no evidence of a lateral articular facet or articular cotyle as in arthrodires (see

222 Discussion for revised interpretation of lateral articular facets in Wijdeaspis described by Young,

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223 1978). Instead, on the medial face of the occiput, above the , the central part of

224 this surface is deeply recessed (Incompletely ossified recess, Fig. 5). This recess opens into the

225 parabranchial cavities. However, it is unclear if this was completely walled in perichondral bone,

226 was cartilaginous, or was open in life. The rear face of the parachordals is not preserved (Fig. 5),

227 such that a separate notochordal canal opening is not apparent, but its diameter and position are

228 constrained by the glenoid process cavities and diameter of the main spinal nerve canal (Figs. 3-

229 5). The notochordal canal was likely about the same size or smaller than the foramen magnum,

230 as in other placoderms.

231 232 Endocranial cavity Draft 233 The endocranial cavity is almost completely preserved, missing only the area anterior to the orbit

234 despite weak ossification in some areas (Figs. 1-5). As some parts of the endocranial cavity are

235 preserved either on the left or on the right side of the specimen, a reconstruction has been

236 produced to facilitate anatomical interpretations (Fig. 7). The overall morphology of the

237 endocranial cavity of Ellopetalichthys is platybasic and resembles that of Macropetalichthys and

238 Shearsbyaspis, with an elongated and laterally narrow profile that is widest at the level of the

239 trigeminal and vagus nerves (Fig. 7).

240 The telencephalic cavity is incomplete, but fragments of the olfactory lobe cavity are

241 preserved on the left side of the specimen (Figs. 2, 7). The diencephalic portion is fairly

242 complete (Figs. 2-3, 7), with large-diameter canals for the optic tract. The mesencephalic portion

243 is almost complete, extending from behind the optic tract until the cerebellar auricles (Figs. 2-3,

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244 7). The ventral side of this region is poorly resolved in the CT scan, leaving no information about

245 the hypophysial duct (Fig. 3).

246 Cavities for the cerebellar auricles of the metencephalon are well developed, showing

247 two very distinct lobes on the dorsal side (Figs. 2-3, 7). The myelencephalic portion of the

248 endocavity is complete dorsally, as a tubular area that is expanded laterally in its posterior

249 portion where it gives origin to the vagus nerve canals (Figs. 2, 7). The canal, the

250 posterior most part of the endocranial cavity, narrows to a long slender canal leading to the

251 foramen magnum (Figs. 4-5).

252

253 Only a small portion of the olfactoryDraft tract canal (N.I) is preserved, on the right side of the 254 specimen (Figs. 2-4, 7). This large-diameter, tubular canal would likely have extended further

255 anteriorly, as in other macropetalichthyids (Stensiö 1925, 1969, Castiello and Brazeau 2018).

256 Although not completely preserved on either side of the specimen, the optic tract (N.II) canal can

257 be reconstructed using the partial preservation of the left anterior and right posterior perichondral

258 walls of the orbital cavity (Figs. 2-3, 7). Among the nerves for the eye muscles, only the

259 oculomotor nerve (N.III) canal is visible, exiting from the lateral wall of the metencephalic

260 cavity (Figs. 2-3, 7). The canal for the profundus branch of the trigeminal nerve (N.V) is

261 preserved on the left side of the specimen, branching from the anteroventral edge of the

262 cerebellar auricles (Figs. 2-3, 7). Their openings on the orbital wall are not resolved.

263 The facial nerve (N.VII) canal is incompletely preserved (Figs. 2-3, 7). It originates

264 posterior to the cerebellar auricles, passing anterolaterally along the anterior surface of the

265 saccular cavity. Only two branches can be reconstructed: the ramus buccalis lateralis (Figs. 2-3,

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266 7) and the ramus ophthalmicus superficialis (Figs. 2-5, 7). Their division from the main canal of

267 the facial nerve is visible on the left side (Figs. 2-3, 7). The short canal for the ramus buccalis

268 lateralis opens through a small foramen on the lateral wall of the orbit. The superficial

269 ophthalmic branch canal extends anterodorsally towards the snout, following the supraorbital

270 sensory line (Figs. 1-3, 7).

271 The acoustic (N.VIII) and glossopharyngeal (N.IX) nerve canals are partially preserved

272 and exit from the anterior myelencephalic portion of the endocavity (Figs. 2-3, 7). The acoustic

273 nerve canal extends laterally to meet the labyrinth (Figs. 2-4, 7) and the glossopharyngeal nerve

274 canal extends posteroventrally, passing below the labyrinth (Fig. 4). The entire course of the 275 glossopharyngeal nerve is not preserved,Draft but a short segment of its posterior portion exits on the 276 anterior area of the paravagal fossa (Fig. 4).

277 The vagus nerve (N.X) canal is very well preserved on both sides and has a complex

278 morphology. Two branches diverge from the vagal recess: an anterior branch extends

279 transversely towards the paravagal fossa (Fig. 2-4, 7), and a posterior branch extends

280 posterolaterally towards the posterior vagal process to openin the occipital (parabranchial) fossa

281 (Figs. 2-4, 7). Several small canals extend from both the anterior and posterior branch of the

282 vagus nerve, projecting dorsolaterally to innervate the main sensory line canals (Figs. 2-4, 7).

283 There is no evidence of any series of spino-occipital nerve canals that normally pierce the

284 occipital arch in other early gnathostomes.

285 Labyrinth cavity

286 Both labyrinth cavities are incompletely preserved (Figs. 2-4, 6). The right labyrinth preserves

287 the anterior semi-circular canal, the medial part of the sacculus, and the posterior semi-circular

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288 canal and ampulla. The left labyrinth shows the anatomy and position of the anterior ampulla,

289 external utriculus, external ampulla, and part of the posterior semicircular canal. Preservation is

290 sufficient to permit reconstruction of the overall structure of the inner ear in Ellopetalichthys

291 (Figs. 6, 7).

292 In dorsal view, the anterior part of the labyrinth can be seen to be almost in contact with

293 the posterior orbital wall (Figs. 1-4). The anterior ampulla lies just behind the posterior orbital

294 wall (Figs. 2, 6). The anterior semi-circular canal extends from the centre of the dorsal side of the

295 sacculus towards the anterior ampulla. The external ampulla extends parallel to the sacculus and

296 connects with the anterior ampulla by a ventrally bent utriculus (Figs. 2-3, 6). The posterior 297 ampulla is located at the posteromesial endDraft of the sacculus, near the canal for the vagus nerve 298 (Figs. 2, 6). The posterior semi-circular canal crosses the sacculus at the level of the origin of the

299 glossopharyngeal nerve and continues laterally to the posterior ampulla. The posterior semi-

300 circular canal is shorter than the anterior one. The anterior and posterior semicircular canals are

301 not in contact and so a crus commune and sinus superior can both be considered absent (Figs. 2,

302 7).

303 The endolymphatic canal has a complex shape (Figs. 2, 6-8). It extends posteriorly from

304 the medial side of the saccular chamber towards the anterior wall of the parabranchial fossa.

305 Along this course, the canal joins with the trunk of the vagus nerve canal (Fig. 2). Immediately

306 anterior to the face of that fossa, the canal makes a sharp dorsolateral twist before expanding into

307 a flask-shaped fossa (Figs. 2, 7). This flask-shaped fossa narrows towards its opening in the skull

308 roof (Fig. 1B-C) via a short duct (Figs. 2, 7).

309

310 Discussion

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311 The inner ear morphology of petalichthyids: revision and comparison

312 The skeletal labyrinth is a source of important phylogenetic and functional anatomical

313 information in early gnathostomes. We are able to reconstruct the labyrinth cavity of

314 Ellopetalichthys by reference to the left and right sides of the specimen (Fig. 6-8). The most

315 completely known skeletal labyrinth of a petalichthyid is that of Macropetalichthys described by

316 Stensiö (1969). However, even the example used by Stensiö is incomplete and required some

317 questionable reconstruction. The position of the anterior ampulla and course of the anterior

318 semicircular canals are the same in Ellopetalichthys and Shearsbyaspis (Fig. 8), corroborating

319 the conclusion by Castiello and Brazeau (2018) that the unusual structure and orientation 320 reconstructed by Stensiö was in error (Fig.Draft 8). We provide further possible systematic characters 321 relevant to placoderm and stem-gnathostome phylogeny.

322 Inner ear characters of macropetalichthyids

323 Although the floor of the saccular chamber is not well preserved in Ellopetalichthys, the

324 left side of the specimen shows that the posterior ampulla joins to the underside of the saccular

325 chamber (Figs. 4, 6). This configuration is unusual among early gnathostomes, but compares

326 well with Stensiö’s (1969) reconstruction of the same structure in Macropetalichthys. In

327 arthrodires, the posterior ampulla sits at about the same dorsoventral level as the anterior ampulla

328 and is above the level of the saccular chamber floor. In Romundina Ørvig (Dupret et al. 2017)

329 and osteichthyans (Jarvik 1980, Giles and Friedman 2014) the ampullae all sit in a line across the

330 top of the saccular cavity. In early chondrichthyans(Maisey 2005, Davis et al. 2012) and the

331 osteichthyan braincase assigned to Ligulalepis Schultze (Clement et al. 2018), the posterior

332 ampulla sits below the level of the anterior and external ampullae. However, the posterior

333 ampulla connects with the posterior part of the saccular cavity in these latter taxa, rather than on

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334 its ventral side. The unusual connection in Macropetalichthys and Ellopetalichthys could

335 therefore be a synapomorphy of petalichthyids.

336 In Macropetalichthys, Ellopetalichthys, and Shearsbyaspis (see Castiello & Brazeau

337 2018), there is a well-developed anteromedial recess of the saccular cavity occupying much of

338 the space between the endocranial cavity and the rear orbital wall (Figs. 2, 7, 8). Although

339 incompletely preserved in Ellopetalichthys, the medial wall of this cavity is observed in the right

340 labyrinth (Figs. 2-4). In arthrodires (Stensiö 1963, Young 1979, Goujet 1984a), the medial

341 margin of the utriculus slopes back posteriorly to meet the mesial wall of the sacculus. The

342 overall shape of the saccular and utricular cavities in Romundina are much more rounded in all 343 dimensions (Dupret et al. 2017), but thereDraft is no antero-medial cavity. Based on this evidence, the 344 anteriomedial cavity of the utriculus can be reasonably interpreted as a synapomorphy of at least

345 some macropetalichthyids.

346 Inner ear characters bearing on broader interrelationships of ‘placoderms’

347 The external ampulla is preserved in Ellopetalichthys (Figs. 2-4, 6), Shearsbyaspis, and

348 Macropetalichthys (Fig. 7) and is connected with the anterior ampulla at a well-developed

349 utricular cavity in all three genera. The external ampulla occupies the same position in these

350 petalichthyids: lateral to the external margin of the sacculus and posterodorsal to the ampulla

351 (Fig. 7). This laterally ‘out-turned’ nexus of the anterior and external ampullae is found in

352 arthrodires, as well as crown-group gnathostomes. The same condition is not observed in

353 Romundina (see Dupret et al. 2017) or Brindabellaspis Young (1980), where the nexus of

354 ampullae is situated on the anterior face of the saccular chamber. In osteostracans, the condition

355 is different from either arrangement because the anterior ampulla lies in a medial position

356 relative to the entire vestibule and no external ampulla is present because there is no external

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357 semi-circular canal (Janvier 1985). However, if one compares only the position of the anterior

358 ampulla across these taxa, a cline can be described with the anterior ampulla shifting from a

359 medial to increasingly lateral position relative to the sacculus between osteostracans, Romundina

360 and Brindabellaspis, and finally petalichthyids, arthrodires, and crown-group gnathostomes.

361 Such a cline would appear to support a grade of placoderms in which Romundina and

362 Brindabellaspis are in outgroup positions relative to the other placoderms and the gnathostome

363 crown. This would be consistent with proposals that so-called ‘acanthothoracid’ placoderms are

364 more phylogenetically removed from crown-group gnathostomes than most other placoderms

365 (Dupret et al. 2014). 366 Our observations confirm the absenceDraft of a sinus superior and skeletal crus commune in 367 macropetalichthyids (Figs. 2, 7). A skeletal crus commune is present in galeaspids, osteostracans,

368 osteichthyans, and non-elasmobranch chondrichthyans (Maisey 2001), Acanthodes Owen (Davis

369 et al. 2012), Romundina (Dupret et al., 2017) and likely also Jagorina Jaeckel (Stensiö 1950).

370 Given these consistent outgroup conditions, we consider the absence of a skeletal crus commune

371 as possible evidence of a close relationship between petalichthyids and arthrodires. The skeletal

372 crus commune is tentatively reconstructed in the antiarch Minicrania by Zhu and Janvier (1996)

373 based on impressions in the underside of the dermatocranium. We caution against inferring a

374 crus commune based on such impressions. Similar impressions are also known in arthrodires (see

375 Goujet 1984a, fig. 4; plate 3, figs. 1,2), where a skeletal crus commune is absent. These

376 impressions instead appear to reflect a ridge inferred to have carried a dorsomedial extension of

377 the external semi-circular canal (Stensiö 1963).

378 Comparative morphology of the endolymphatic ducts

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379 The complete endolymphatic canals of Ellopetalichthys allow clarification of their

380 apparently unusual structure in macropetalichthyids. Stensiö’s (1969) illustrations of the

381 endolymphatic ducts of Macropetalichthys show them as having oblate, large-diameter openings

382 in the top of the braincase. In Ellopetalichthys, it is evident that these are not openings, but are

383 oblate sac-like expansions of the endolymphatic duct. Brindabellapsis has similar oblate

384 endolymphatic sacs (Young 1980), but these differ in extending parallel to the long axis of the

385 brain endocavity. In petalichthyids, the sac is separated from the labyrinth and oriented laterally

386 at a right angle to the long axis of the endocavity (Fig. 2, 6). When broken through dorsally,

387 these would appear to be vertically oriented openings similar to Brindabellapsis. The unusual

388 shape in petalichthyids can be interpreted as accommodating the large parabranchial fossae, as

389 their sharp lateral twist follows the anteriorDraft wall of these cavities (Fig. 2). By contrast, such

390 fossae are absent in Brindabellaspis (Young 1980).

391

392 Petalichthyid occipital and neck joint morphology

393 The craniothoracic neck joint of placoderms carries important phylogenetic information (Goujet

394 1984b, Goujet and Young 1995, Zhu et al. 2019). The occipital region and neck joint

395 morphology of petalichthyids exhibits several, likely apomorphic, conditions. Some aspects of

396 the neck joint have been used to propose close relationship between petalichthyids and

397 ptyctodontid placoderms (Goujet 1984b, Goujet and Young 1995). However, a clear

398 understanding of the comparative morphology of this area is still lacking. This is due to the few

399 specimens in which the occipital joint is well preserved and the rarity of confidently assigned

400 petalichthyid anterior dorsolateral (ADL) plates bearing the complementary articulation for the

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401 joint. The cranial component of the joint is well-preserved in Ellopetalichthys and can help

402 resolve some comparative anatomical problems.

403 Comparative anatomy of cranio-thoracic joints

404 Young (1978) and Goujet (1984b) noted difficulties in interpreting the comparative

405 morphology of the petalichthyid occiput and neck joint. Young tentatively interpreted a pair of

406 circular depressions on the occipital surface of Wijdeaspis as lateral articular facets (1978).

407 These facets were situated immediately above and lateral to the foramen magnum. He argued

408 that they compare well in shape and position to similarly named facets in arthrodires. The

409 problem with this interpretation is that these depressions occupy nearly the entire space between 410 the para-articular processes and leave noDraft room for head levator muscles, creating a functionally 411 dubious arrangement. These depressions instead correspond positionally to the inferred

412 insertions of the epaxial or levator capitis muscles of other placoderms (Fig. 9). By this

413 interpretation, lateral articular facets in petalichthyids are undeveloped.

414 Nevertheless, we accept Young’s (1978) identification of the deep dermal blades flanking

415 the occiput as para-articular processes (Figs. 1, 3, 5, 9). This process sits immediately below the

416 main lateral line canal in both arthrodires and petalichthyids (Fig. 9). The terminology used here

417 and by Young follows that of Stensiö (1963), but the same structure has been variably described

418 as the “glenoid process” of other authors (White and Toombs 1972). This process occurs widely

419 among arthrodires and is in some cases it is well developed as in Mulgaspis (Ritchie 2004). The

420 chief difference between arthrodires and petalichthyids, therefore, is that in the former the blades

421 are turned outwards laterally, whereas in petalichthyids they are vertically oriented, and their

422 long axis is longitudinal (Fig. 9).

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423 In phylogenetic character lists of placoderms and early gnathostomes, the cranio-thoracic

424 joint is treated as a single character and subdivided into five states. Goujet and Young (1995)

425 identify the shared condition between petalichthyids and ptyctodonts as a “longitudinal” state,

426 while Dupret et al. (2014) identify it as a “spoon-like” state and shared with Romundina (we see

427 no compelling similarities between the neck joints of petalichthyids or ptyctodonts, on the one

428 hand, and Romundina, on the other, and suggest this may simply have been coded in error).

429 Neither state is clearly defined. We argue that the use of a single, unordered multi-state character

430 inadequately captures neck joint diversity. The para-articular process is present in petalichthyids

431 and many arthrodires. Thus, the “longitudinal” state is only applicable to those taxa with a para-

432 articular process, which in turn can be treated as its own binary presence/absence character. Draft 433 The presence of a para-articular process in ptyctodontids has not, in fact, been clearly

434 illustrated in any indisputable ptyctodontid taxa, leaving open the significance of this trait in

435 uniting petalichthyids and ptyctodonts. Comparisons between ptyctodontid and petalichthyid

436 neck joints rely on Mark-Kurik’s (1977) description of Tollodus Mark-Kurik. However, the

437 specimen showing a petalichthyid-like corresponding skull roof and dorsal shoulder arcade

438 (Mark-Kurik, 1977, fig. 6) is not assigned to Tollodus and is not unequivocally referable to a

439 ptyctodontid as it is incomplete. However, Mark-Kurik’s comparison likened the very similar

440 ADL plates of this specimen with those of Tollodus, suggesting a nearly identical mode of

441 articulation. The specimen bears a petalichthyid-like neck joint with longitudinally oriented para-

442 articular processes, clasped laterally by the articular process of the ADL plate. In well-preserved,

443 indisputable ptyctodont fossils (e.g. Long 1997, Trinajstic et al. 2012), there is no set of

444 processes that have yet been identified as para-articular processes. Given these uncertainties,

445 more detailed analyses of this anatomy in ptyctodontids seem warranted.

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446 We suggest that the craniothoracic joints should be broken into multiple characters, rather

447 than a single multi-state character (Zhu et al. 2019). A para-articular process may unite

448 arthrodires and petalichthyids; ptyctodontids could join these groups if the presence of a process

449 could be more robustly documented. The so-called ‘ginglymoid’ neck joint is seen in arthrodires

450 refers to a well-developed, nearly hemi-cylindrical lateral articular facet (Fig. 9) that receives a

451 complementary condyle on the ADL should be its own binary character. The presence of such a

452 facet has no bearing on the presence of a para-articular process or its shape. The shape of the

453 para-articular process may be either vertically oriented as in petalichthyids,or laterally splayed as

454 in arthrodires (Fig. 9). These conditions should therefore be represented as a set of reductively

455 coded characters (Strong and Lipscomb 1999, Brazeau 2011). Draft 456

457 Biomechanical reinterpretation of petalichthyid cranio-thoracic joints

458 Our reinterpretation of the facets in Wijdeaspis as levator muscle insertions has

459 biomechanical implications. This revised identification is consistent with how the head levator

460 muscles would be expected to function: lifting the head, using the occipital glenoids as a

461 fulcrum. Young (1978) argued that this was functionally sub-optimal, as it places the hinge of

462 the dermal neck joint above the fulcrum formed by the occipital glenoids. He suggested that if

463 the joints formed a “guiding” surface (Young 1978, p. 113), rather than a pivot this position is

464 less problematic (note that the “gliding” type of neck used in phylogenetic character lists differs

465 from the condition described by Young’s confusingly similar term). We presume this guiding

466 function referred to the condition of having been clasped laterally by processes of the ADL plate,

467 as in Mark-Kurik’s (1977) inferred ptyctodont example. Our reinterpretation of the facets in

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468 Wijdeaspis as epaxial muscle insertions resolves Young’s dilemma: the head-elevating muscles,

469 which form the in-lever, now sit above the fulcrum formed by the occipital glenoids (Fig. 9).

470 Conclusions

471 The results of our examination of the three-dimensionally preserved holotype of Ellopetalichthys

472 represent the first description of the neurocranial anatomy for this taxon, including details on the

473 orbital wall, brain cavity, cranial nerve canals, inner ear and occipital joint morphology. We have

474 clarified a number of phylogenetic character states, proposing how they can be described and

475 encoded for phylogenetic analyses. However, further work must be done to better characterise

476 neck joints in placoderms—in particular, ptyctodontids—both in terms of comparative anatomy 477 and character coding procedures. RecentDraft studies of placoderm relationships might be overly 478 focused on the proximity of certain placoderm groups to the gnathostome crown. This possibly

479 leads trees overly imbalanced towards the gnathostome crown and could explain the high

480 instability of many placoderm subgroups between the trees of different phylogenetic studies.

481 Addressing this requires better understanding of characters that could potentially link the

482 subgroups of this assemblage. Petalichthyids have been of particular importance because of their

483 perceived osteostracan-like characters. However, as we have shown here and elsewhere

484 (Castiello and Brazeau 2018), new anatomical data for petalichthyids could restore the earlier

485 hypotheses of their close relationships with arthrodires and the secondary derivation of their

486 osteostracan-like characters.

487

488 Acknowledgments

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489 We thank Franz-Josef Lindemann at the NHMO for loan of the Ellopetalichthys holotype. Farah

490 Ahmed at the NHM Imaging and Analysis Centre is thanked for assistance with conducting the

491 computed tomography scanning. Sam Giles (University of Birmingham) is thanked for

492 discussions on inner ear morphology. We thank Zerina Johanson (Natural History Museum,

493 UK), an anonymous referee, and Associate Editor Craig Scott for their detailed comments which

494 greatly improved the manuscript. The work was supported by a European Research Council

495 Starting Grant under European Union’s Seventh Framework Programme (FP/2007–2013)/ERC

496 Grant Agreement number 311092 to M.D.B. This work began when M. F. was at the University

497 of Oxford, where he was supported by St Hugh's College, the John Fell Fund, and a Philip

498 Leverhulme Prize. Draft 499

500 Figure Captions

501 Fig. 1. NHMO A13047, Ellopetalichthys scheii: (A) Skull reconstruction adapted from Ørvig

502 (1957); Virtual 3D models of skull from segmented CT data in (B) dorsal and (C) lateral views.

503 Note that artificial straight edges in the model and illustration reflect areas unresolved in the scan

504 and which could not be confidently segmented. APaN, anterior paranuchal plate; Mg, marginal

505 plate; Nu, nuchal plate; PaN, paranuchal plate; Po, postorbital plate.

506

507 Fig. 2. NHMO A13047, Ellopetalichthys scheii braincase and endocranial surface in dorsal view:

508 (A) virtual 3D model of skull from segmented CT data; (B) interpretive drawing. Note that

509 artificial straight edges in the model and illustration reflect areas unresolved in the scan and

510 which could not be confidently segmented. Dashed lines indicate incomplete margins. Roman

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511 numerals indicate canals for cranial nerves. Vpf?, possible canal of the profundus branch of

512 trigeminal nerve; VIIopht, superficial ophthalmic nerve canal. Colour scheme legend same as

513 Fig. 1.

514

515 Fig. 3. NHMO A13047, Ellopetalichthys scheii braincase and endocranial surface of in ventral

516 view: (A) virtual 3D model of skull from segmented CT data; (B) interpretive drawing. Note that

517 artificial straight edges in the model and illustration reflect areas unresolved in the scan and

518 which could not be confidently segmented. Roman numerals indicate canals for cranial nerves.

519 Vpf?, possible course of the profundus branch of trigeminal nerve; VIIbuc.lat, buccalis lateralis 520 branch of the facial nerve; Xa, anterior branchDraft of vagus nerve, Xp, posterior branch of vagus 521 nerve. Dashed lines indicate incomplete margins; Colour scheme legend for A same as Fig. 1;

522 colour scheme legend for B same as Fig. 2.

523

524 Fig. 4. NHMO A13047, Ellopetalichthys scheii transparent interpretive drawing of endocranium

525 and cranial endocavity in ventral view with transparent overlay of basicranial surface to show

526 positional relationships between nerve canals and superficial structures. Note that artificial (i.e.

527 straight) edges in the illustration reflect areas unresolved in the scan and which could not be

528 confidently segmented. Xa, anterior branch of vagus nerve, Xp, posterior branch of vagus nerve.

529 Dashed lines indicate incomplete margins; cross-hatching indicates incomplete or weakly

530 ossified surfaces. Colour scheme and hatching legends same as Figs. 2 and 3.

531

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532 Fig. 5. NHMO A13047, Ellopetalichthys scheii braincase and endocranial surface of in posterior

533 view: (A) virtual 3D model from segmented CT data; (B) interpretive drawing. Colour scheme

534 legend for A same as Fig. 1; colour scheme legend for B same as Fig. 2.

535

536 Fig. 6. NHMO A13047, Ellopetalichthys scheii skeletal labyrinths in lateral views: (A) left

537 lateral view interpretive drawing; (B) virtual 3D model of left lateral view from segmented CT

538 data; (D) right lateral view interpretive drawing; (B) virtual 3D model of right lateral view from

539 segmented CT data; (E) composite reconstruction in left lateral view. Dashed lines indicate

540 incomplete or inferred margins; Hatching convention same as Fig. 3. X, vagus nerve.

541 Draft

542 Fig. 7. Reconstruction of the braincase and nerve canal endocast of Ellopetalichthys scheii.

543 Roman numerals indicate canals for cranial nerves. Vpf, profundus branch of trigeminal nerve;

544 VIIbuc.lat, ramus buccalis lateralis of facial nerve; VIIopht, superficial ophthalmic nerve canal;

545 Xa, anterior branch of vagus nerve, Xp, posterior branch of vagus nerve.

546

547 Fig. 8. Reconstruction and comparison of the skeletal labyrinth of three petalichthyid taxa

548 showing a new interpretation of the likely position of the ampulla and course of anterior semi-

549 circular canal in Macropetalichthys. Macropetalichthys drawings are re-drafted and modified

550 based on Stensiö (1969). Shearsbyaspis is redrafted from Castiello and Brazeau (2018). Colour

551 scheme legend for A same as Fig. 1.

552

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553 Fig. 9. Comparative anatomy of the occipital surface and cranial side of the cranio-thoracic joint

554 of four placoderm taxa: (A) Arabosteus (‘Acanthothoraci’); (B) Parabuchanosteus (Arthrodira);

555 (C) Ellopetalichthys (Petalichthyida); (D) Wijdeaspis (Petalichthyida). The para-articular process

556 is shown to consistently join below the course of the main lateral line canal in petalichthyids and

557 the arthrodire Parabuchanosteus [redrawn and modified from White and Toombs (1972) and

558 modified after (Long et al. 2014)]. Wijdeaspsis is redrawn from Young (1978). Arabosteus is

559 original artwork drawn from photograph in Olive et al. (2011).

560

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Draft

Fig. 1. NHMO A13047, Ellopetalichthys scheii: (A) Skull reconstruction adapted from Ørvig (1957); Virtual 3D models of skull from segmented CT data in (B) dorsal and (C) lateral views. Note that artificial straight edges in the model and illustration reflect areas unresolved in the scan and which could not be confidently segmented. APaN, anterior paranuchal plate; Mg, marginal plate; Nu, nuchal plate; PaN, paranuchal plate; Po, postorbital plate.

181x133mm (300 x 300 DPI)

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Fig. 2. NHMO A13047, Ellopetalichthys scheii braincase and endocranial surface in dorsal view: (A) virtual 3D model of skull from segmented CT data;Draft (B) interpretive drawing. Note that artificial straight edges in the model and illustration reflect areas unresolved in the scan and which could not be confidently segmented. Dashed lines indicate incomplete margins. Roman numerals indicate canals for cranial nerves. Vpf?, possible canal of the profundus branch of trigeminal nerve; VIIopht, superficial ophthalmic nerve canal. Colour scheme legend same as Fig. 1.

181x105mm (300 x 300 DPI)

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Fig. 3. NHMO A13047, Ellopetalichthys scheii braincase and endocranial surface of in ventral view: (A) virtual 3D model of skull from segmented CT data; (B) interpretive drawing. Note that artificial straight edges in the model and illustration reflect areasDraft unresolved in the scan and which could not be confidently segmented. Roman numerals indicate canals for cranial nerves. Vpf?, possible course of the profundus branch of trigeminal nerve; VIIbuc.lat, buccalis lateralis branch of the facial nerve; Xa, anterior branch of vagus nerve, Xp, posterior branch of vagus nerve. Dashed lines indicate incomplete margins; Colour scheme legend for A same as Fig. 1; colour scheme legend for B same as Fig. 2.

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Draft

Fig. 4. NHMO A13047, Ellopetalichthys scheii transparent interpretive drawing of endocranium and cranial endocavity in ventral view with transparent overlay of basicranial surface to show positional relationships between nerve canals and superficial structures. Note that artificial (i.e. straight) edges in the illustration reflect areas unresolved in the scan and which could not be confidently segmented. Xa, anterior branch of vagus nerve, Xp, posterior branch of vagus nerve. Dashed lines indicate incomplete margins; cross-hatching indicates incomplete or weakly ossified surfaces. Colour scheme and hatching legends same as Figs. 2 and 3.

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Fig. 5. NHMO A13047, Ellopetalichthys scheii braincase and endocranial surface of in posterior view: (A) virtual 3D model from segmented CT data; (B) interpretive drawing. Colour scheme legend for A same as Fig. 1; colour scheme legend for B same as Fig. 2.

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Fig. 6. NHMO A13047, Ellopetalichthys scheii skeletal labyrinths in lateral views: (A) left lateral view interpretive drawing; (B) virtual 3D model of left lateral view from segmented CT data; (D) right lateral view interpretive drawing; (B) virtual 3D model of right lateral view from segmented CT data; (E) composite reconstruction in left lateral view. Dashed lines indicate incomplete or inferred margins; Hatching convention same as Fig. 3. X, vagus nerve.

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Fig. 7. Reconstruction of the braincase and nerve canal endocast of Ellopetalichthys scheii. Roman numerals indicate canals for cranial nerves. Vpf, profundus branch of trigeminal nerve; VIIbuc.lat, ramus buccalis lateralis of facial nerve; VIIopht, superficial ophthalmic nerve canal; Xa, anterior branch of vagus nerve, Xp, posterior branch of vagus nerve.

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Fig. 8. Reconstruction and comparison of the skeletal labyrinth of three petalichthyid taxa showing a new interpretation of the likely position of the ampulla and course of anterior semi-circular canal in Macropetalichthys. Macropetalichthys drawings are re-drafted and modified based on Stensiö (1969). Shearsbyaspis is redrafted from Castiello andDraft Brazeau (2018). Colour scheme legend for A same as Fig. 1. 134x68mm (300 x 300 DPI)

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Fig. 9. Comparative anatomy of the occipital surface and cranial side of the cranio-thoracic joint of four placoderm taxa: (A) Arabosteus (‘Acanthothoraci’); (B) Parabuchanosteus (Arthrodira); (C) Ellopetalichthys (Petalichthyida); (D) Wijdeaspis (Petalichthyida). The para-articular process is shown to consistently join below the course of the main lateral line canal in petalichthyids and the arthrodire Parabuchanosteus [redrawn and modified from White and Toombs (1972) and modified after (Long et al. 2014)]. Wijdeaspsis is redrawn from Young (1978). Arabosteus is drawn from photograph in Olive et al. (2011).

134x143mm (300 x 300 DPI)

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