Quantitative Electron Delocalization in Solids from Maximally Localized Wannier Functions

Total Page:16

File Type:pdf, Size:1020Kb

Quantitative Electron Delocalization in Solids from Maximally Localized Wannier Functions Quantitative electron delocalization in solids from maximally localized Wannier functions A. Otero-de-la-Roza,1, ∗ Angel´ Mart´ınPend´as,1 and Erin R. Johnson2 1Departamento de Qu´ımica F´ısica y Anal´ıtica, Facultad de Qu´ımica, Universidad de Oviedo, 33006 Oviedo, Spain 2Department of Chemistry, Dalhousie University, 6274 Coburg Road, Halifax, Nova Scotia, Canada B3H 4R2 (Dated: September 26, 2018) Electron delocalization is the quantum-mechanical principle behind chemical concepts such as aromaticity, resonance, and bonding. A common way to measure electron delocalization in the solid state is through the visualization of maximally localized Wannier functions, a method similar to using localized orbitals in molecular quantum chemistry. Although informative, this method can only provide qualitative information, and is essentially limited by the arbitrariness in the choice of orbital rotation. Quantitative orbital-independent interatomic delocalization indices can be calculated by integration inside atomic regions of probability densities obtained from the system's wavefunction. In particular, Bader's delocalization indices are very informative, but typically expensive to calculate. In this article, we present a fast method to obtain the localization and delocalization indices in a periodic solid under the plane-wave/pseudopotential approximation. The efficiency of the proposed method hinges on the use of grid-based atomic integration techniques and maximally localized Wannier functions. The former enables the rapid calculation of all atomic overlap integrals required in the construction of the delocalization indices. The latter allows discarding the overlaps between maximally localized Wannier functions whose centers are far enough apart. Using the new method, all localization and delocalization indices in solids with dozens of atoms can be calculated in hours on a desktop computer. Illustrative examples are presented and studied: some simple and molecular solids, polymeric nitrogen, intermolecular delocalization in ten phases of ice, and the self-ionization of ammonia under pressure. This work is an important step towards the quantitative description of chemical bonding in solids under pressure. INTRODUCTION the delocalized electron can be observed on A or on B, but not on both. Therefore, interatomic electron delocal- The interpretation of quantum chemical results is ization is directly calculated from the system's wavefunc- fraught with difficulty because traditional chemical con- tion as the (negative) covariance between the population cepts are not readily obtainable from the outcome of a distributions of two given atoms. In addition to being quantum mechanical calculation. Chemical models de- related to the traditional chemical concepts of electron veloped before the advent of quantum mechanics (aro- sharing and covalent bonding, electron delocalization is maticity, bond order, etc.) are not uniquely defined also behind physical phenomena such as magnetic ex- in terms of the system's wavefunction, yet they are in- change and electrical conductivity. valuable to understand and predict chemical phenom- A number of local properties, the most popular of ena. Over the years, many methods have been devel- which is the electron localization function[6, 7] (ELF), oped to extract chemical information from computed have been developed to interpret chemical bonding. How- wavefunctions. A common technique in the solid state ever, these quantities are only tangentially related to spa- is the interpretation of the band structure, and of the tial delocalization, and their interpretation is often not projections of Bloch states onto localized atomic-like straightforward. Other approaches are based on examin- orbitals. The equivalent of Bloch states in molecular ing the shape of localized orbitals, calculated using some quantum chemistry|orbitals|have long been used to ultimately arbitrary localization procedure.[8{11] In con- predict chemical reactivity. An alternative to orbital- trast to these methods, the calculation of the population based descriptors of chemical bonding is Bader's Quan- covariances in the QTAIM basins, known as localization tum Theory of Atoms in Molecules[1{5] (QTAIM), in and delocalization indices (DIs),[12] gives a direct quanti- which atomic regions (basins) are defined based on phys- tative measure of interatomic electron delocalization. DIs ical observables such as the electron density. have found ample use in the literature, with applications An important chemical concept is interatomic electron such as the calculation of bond orders and the position of delocalization. In quantum mechanical terms, delocal- electron pairs[13{18], NMR coupling constants[19], and ization between two atoms occurs when there is a statis- aromaticity[20], to name a few. Some of us recently used tical correlation between their electron populations. An DIs to detect delocalization error from density functional electron delocalized between A and B contributes to the approximations in halogen-bonded systems.[21] average electron population of both. It also imposes a The downside of DIs is that their computation is signif- negative correlation between the two populations, since icantly more complex than the aforementioned alterna- 2 tives. At the simplest level (Hartree-Fock or Kohn-Sham 0 for all B. The properties of variance and covariance density-functional theory), DIs require the calculation of ensure that: the overlaps between all pairs of occupied orbitals, in- 1 X tegrated over each atomic basin. While manageable in N = λ + δ (4) A A 2 AB gas-phase molecules, the sheer number of atomic over- B6=A lap integrals in infinite periodic solids makes the calcu- for every atom A in the system. Thus, the average num- lation of DIs much more challenging. To our knowledge, ber of electrons in atom A can be effectively partitioned the only practical approach to the calculation of DIs in into \localized" (first term) and \shared" (second term). condensed systems has been proposed by Baranov and The average values in the preceding equations are cal- Kohout[22] in the context of the augmented-plane-wave culated by integrating the relevant one- and two-particle (APW) method, and it requires a relatively large amount probability densities. Namely, the electron density (ρ(r)) of computational resources (specifically, memory). and the pair density (π(r ; r )). The latter is written in In this work, we present an alternative method 1 2 terms of an exchange-correlation density: to calculate DIs in periodic solids using the plane- wave/pseudopotential approach. The efficiency of the π(r1; r2) = ρ(r1)ρ(r2) − ρxc(r1; r2) (5) atomic basin integrations is greatly enhanced by using grid-specific integration methods, particularly Henkel- that measures the deviation of the pair density from the man et al.'s[23{25] and the Yu-Trinkle method.[26, 27] In independent-electron distribution. In a Hartree-Fock cal- addition, the use of maximally-localized Wannier func- culation, the exchange-correlation density contains only tions (MLWF) allows bypassing the calculation of all the exchange contribution: atomic overlaps involving functions whose centers are suf- ficiently far apart. The combination of these two ideas ρxc(r1; r2) = γ(r1; r2)γ(r2; r1) (6) results in a method that efficiently calculates all the DIs where γ(r ; r ) is the one-electron density matrix: in a periodic solid, and can be applied to systems with 1 2 dozens of atoms in the unit cell using a desktop computer. occ X ∗ The application of our new method to the calculation of γ(r1; r2) = i (r1) i(r2) (7) DIs in solids under pressure will allow the quantitative i description of bonding in such cases, where traditional In a Kohn-Sham density-functional theory (DFT) cal- chemical assumptions often do not apply. A few illus- culation, only the electron density is available, but the trative examples in this regard are provided in the last exchange-correlation density is approximated by replac- section. ing i with the Kohn-Sham orbitals. Since the exchange part of the exchange-correlation density contains most of its features (and the correct normalization) and Kohn- THEORY Sham and Hartree-Fock orbitals are similar, these as- sumptions yield delocalization indices that are still chem- Localization and delocalization indices ically meaningful,[28{30] at least in cases where strong correlation effects can be ignored. All equations and re- The average electron population, NA, of an atom A sults in the rest of the article use Kohn-Sham DFT. is given by integrating the electron density ρ(r) over its The localization and delocalization indices can be basin: shown to be[12]: Z α β NA = hn^Ai = ρ(r)dr; (1) λA = FAA + FAA (8) A α β δAB = 2(FAB + FAB) (9) In this work, we use the QTAIM atomic basins, which are σ defined as the region enclosed by zero-flux surfaces of the where the FAB are integrals of the exchange-correlation electron density.[4] Localization and delocalization are re- density over the basins of A and B: lated to the variance and covariance of the atomic pop- Z Z σ ulations. In particular, we define the localization (λA) FAB = ρxc(r1; r2)dr1dr2 (10) A B and delocalization (δAB) indices[12] as: X Aσ Bσ = Sji Sij (11) 2 2 ij λA = NA − Var(nA) = hn^Ai − (hn^Ai − hn^Ai ) (2) 2 δAB = −2 Cov(nA; nB) = −2(hn^An^Bi − hn^Ai ) (3) Aσ and the atomic overlap matrices Sij are defined as: Z where NA ≥ λA ≥ 0 and δAB ≥ 0. Inside a region where Aσ σ∗ σ Sij = i (r) j (r)dr (12) electrons are perfectly localized, λA = NA and δAB = A 3 Aσ ∗ ∗ ∗ The Sij are complex Hermitian matrices whose value the a , b , and c reciprocal directions (respectively) is depends on the particular set of orbitals used to describe equivalent to assuming periodic boundary conditions for σ the system. In contrast, FAB is a real symmetric matrix all one-electron states over a n1 × n2 × n3 supercell in that does not depend on the orbital rotation and, in con- real space (in the following, the supercell).
Recommended publications
  • Evolution of the Spin Magnetic Moments and Atomic Valence of Vanadium in Vcux+, Vagx+, and Vaux+ Clusters (X = 3–14) William H
    Virginia Commonwealth University VCU Scholars Compass Physics Publications Dept. of Physics 2017 Evolution of the Spin Magnetic Moments and Atomic Valence of Vanadium in VCux+, VAgx+, and VAux+ Clusters (x = 3–14) William H. Blades Virginia Commonwealth University, University of Virginia Arthur C. Reber Virginia Commonwealth University Shiv N. Khanna Virginia Commonwealth University, [email protected] See next page for additional authors Follow this and additional works at: http://scholarscompass.vcu.edu/phys_pubs Part of the Physics Commons Copyright © 2017 American Chemical Society Downloaded from http://scholarscompass.vcu.edu/phys_pubs/208 This Article is brought to you for free and open access by the Dept. of Physics at VCU Scholars Compass. It has been accepted for inclusion in Physics Publications by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. Authors William H. Blades, Arthur C. Reber, Shiv N. Khanna, Luis López-Sosa, Patrizia Calaminici, and Andreas M. Köster This article is available at VCU Scholars Compass: http://scholarscompass.vcu.edu/phys_pubs/208 Article pubs.acs.org/JPCA Evolution of the Spin Magnetic Moments and Atomic Valence of + + + Vanadium in VCux , VAgx , and VAux Clusters (x =3−14) William H. Blades,†,‡ Arthur C. Reber,† Shiv N. Khanna,*,† Luis Lopez-Sosa,́ § Patrizia Calaminici,*,§ and Andreas M. Köster§ † Department of Physics, Virginia Commonwealth University, Richmond, Virginia 23284, United States ‡ Department of Materials Science and Engineering, University of Virginia, Charlottesville, Virginia 22904, United States § Departamento de Química, CINVESTAV, Av. Instituto Politecnicó Nacional 2508, A.P. 14-740, Mexicó D.F. 07000, Mexico *S Supporting Information ABSTRACT: The atomic structures, bonding characteristics, spin + + + − magnetic moments, and stability of VCux , VAgx , and VAux (x =3 14) clusters were examined using density functional theory.
    [Show full text]
  • Nanomedicine and Nanoscience Research Bourassa DJ and Kerna NA
    Nanomedicine and Nanoscience Research Bourassa DJ and Kerna NA. J Nanomed Nanosci: JNAN-152. Perspective DOI: 10.29011/2577-1477.100052 Will Nanocarbon Onion-Like Fullerenes (NOLFs) Play a Decisive Role in the Future of Molecular Medicine? Part 1. Foundation in Fullerenes: Theoretical Application of NOLFs in the Quantum Cell Daniel J. Bourassa and Nicholas A. Kerna* College of Medicine, University of Science, Arts and Technology, Montserrat, BWI *Corresponding author: Nicholas A. Kerna, College of Medicine, University of Science, Arts and Technology, 4288 Youngfield Street, Wheat Ridge, CO 80033, USA. Email: [email protected] Citation: Bourassa DJ, Kerna NA (2018) Will Nanocarbon Onion-Like Fullerenes (NOLFs) Play a Decisive Role in the Future of Molecular Medicine? Part 1. Foundation in Fullerenes: Theoretical Application of NOLFs in the Quantum Cell. J Nanomed Nanosci: JNAN-152. DOI: 10.29011/2577-1477.100052 Received Date: 27 August, 2018; Accepted Date: 14 September, 2018; Published Date: 20 December, 2018 Abstract Mitochondria are central to the defense, bioenergetics, biosynthesis, replication, and other metabolic activities of the cell. Mitochondrial perturbation triggers a cascade of cellular defenses that affect the entire organism. Unabated, this perturbation can cause impairment of whole body systems resulting in chronic, degenerative diseases and aging. Molecular substances that improve or restore the quantum mechanics and electrodynamics of mitochondria (and, thus, the cell) may become the medicines of the future. Due
    [Show full text]
  • Electronic and Aromatic Properties of Graphene and Nanographenes of Various Kinds: New Insights and Results
    Research Article 2017, 8(3), 256-261 Advanced Materials Letters Electronic and aromatic properties of graphene and nanographenes of various kinds: New insights and results Aristides D. Zdetsis1,2*, Eleftherios N. Economou2 1Molecular Engineering Laboratory, Department of Physics University of Patras, Patra, 26500 GR, Greece 2Institute of Electronic Structure and Laser, Foundation for Research and Technology, Vassilika Vouton, P.O. Box 1385, Heraklion 71110 GR, Greece *Corresponding author, Tel: (+30) 2610 997 458; E-mail: [email protected] Received: 13 September 2016, Revised: 30 October 2016 and Accepted: 22 November 2016 DOI: 10.5185/amlett.2017.7104 www.vbripress.com/aml Abstract Using suitable Density Functional Theory (DFT) methods and models of various sizes and symmetries, we have obtained the aromaticity pattern of infinite graphene, which is an intrinsically collective effect, by a process of “spatial” evolution. Using a similar process backwards we obtain the distinct aromaticity pattern(s) of finite nanographenes, graphene dots, antidots, and graphene nanoribbons. We have shown that the periodicities in the aromaticity patterns and the band gaps of graphene nanoribbons and carbon nanotubes, are rooted in the fundamental aromaticity pattern of graphene and its size evolution, which is uniquely determined by the number of edge zigzag rings. For graphene antidots the nature of the aromaticity and related properties are largely depended on the degree of antidot passivation. For atomically precise armchair nanoribbons (AGNRs), the aromaticity and the resulting band gaps, besides the number of zigzag rings which determines their widths, are also depended on the finite length of the ribbons, which is usually overlooked in the literature.
    [Show full text]
  • Electron-Poor Polar Intermetallics: Complex Structures, Novel Clusters, and Intriguing Bonding with Pronounced Electron Delocalization
    Ames Laboratory Accepted Manuscripts Ames Laboratory 2018 Electron-Poor Polar Intermetallics: Complex Structures, Novel Clusters, and Intriguing Bonding with Pronounced Electron Delocalization Qisheng Lin Iowa State University and Ames Laboratory, [email protected] Gordon J. Miller Iowa State University and Ames Laboratory, [email protected] Follow this and additional works at: https://lib.dr.iastate.edu/ameslab_manuscripts Part of the Materials Chemistry Commons, and the Physical Chemistry Commons Recommended Citation Lin, Qisheng and Miller, Gordon J., "Electron-Poor Polar Intermetallics: Complex Structures, Novel Clusters, and Intriguing Bonding with Pronounced Electron Delocalization" (2018). Ames Laboratory Accepted Manuscripts. 509. https://lib.dr.iastate.edu/ameslab_manuscripts/509 This Article is brought to you for free and open access by the Ames Laboratory at Iowa State University Digital Repository. It has been accepted for inclusion in Ames Laboratory Accepted Manuscripts by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Electron-Poor Polar Intermetallics: Complex Structures, Novel Clusters, and Intriguing Bonding with Pronounced Electron Delocalization Abstract Conspectus Intermetallic compounds represent an extensive pool of candidates for energy related applications stemming from magnetic, electric, optic, caloric, and catalytic properties. The discovery of novel intermetallic compounds can enhance understanding of the chemical principles that govern structural stability and chemical bonding as well as finding new applications. alenceV electron-poor polar intermetallics with valence electron concentrations (VECs) between 2.0 and 3.0 e–/atom show a plethora of unprecedented and fascinating structural motifs and bonding features. Therefore, establishing simple structure-bonding-property relationships is especially challenging for this compound class because commonly accepted valence electron counting rules are inappropriate.
    [Show full text]
  • Carbon Nanotubes in Our Everyday Lives
    Carbon Nanotubes in Our Everyday Lives Tanya David,* [email protected] Tasha Zephirin,** [email protected] Mohammad Mayy,* [email protected] Dr. Taina Matos,* [email protected] Dr. Monica Cox,** [email protected] Dr. Suely Black* [email protected] * Norfolk State University Center for Materials Research Norfolk, VA 23504 ** Purdue University Department of Engineering Education West Lafayette, IN 47907 Copyright Edmonds Community College 2013 This material may be used and reproduced for non-commercial educational purposes only. This module provided by MatEd, the National Resource Center for Materials Technology Education, www.materialseducation.org, Abstract: The objective of this activity is to create an awareness of carbon nanotubes (CNT) and how their use in future applications within the field of nanotechnology can benefit our society. This newly developed activity incorporates aspects of educational frameworks such as “How People Learn” (Bransford, Brown, & Cocking, 1999)) and “Backwards Design” (Wiggins & McTighe, 2005). This workshop was developed with high school and potentially advanced middle school students as the intended audience. The workshop facilitators provide a guided discussion via PowerPoint presentation on the relevance of nanotechnology in our everyday lives, as well as CNT potential applications, which are derived from CNT structures. An understanding of a carbon atom structure will be obtained through the use of hands-on models that introduce concepts such as bonding and molecular geometry. The discussion will continue with an explanation of how different types of molecular structures and arrangements (shapes) can form molecules and compounds to develop various products such as carbon sheets.
    [Show full text]
  • Chemical Familes
    CHEMICAL FAMILES The number of valence electrons and the number of occupied energy levels in an atom of an element determine the position of an element in the periodic table.i.e The number of occupied energy levels determine the Period and the valence electrons determine the Group.Elements with the same number of electrons in the outermost energy level belong to the same group. Electrons in the outermost energy level of an atom is what is called valence electrons. Elements in the same group have similar physical and chemical properties. The trends in physical and chemical properties of elements in the same group vary down the group. Elements in the same group thus constitute a chemical family. Alkali metals (Group I elements) Group I elements are called Alkali metals except Hydrogen which is a non metal. The alkali metals include:Lithium,sodium,rubidium,caesium and francium. The properties of the first 3 members of the family are discussed in this chapter. Element Symbol Atomic Electron Atomic Ionic radius(nm) no. radius(nm) arrangement Lithium L 3 2.1 0.133 0.060 Sodium Na 11 2.8.1 0.157 0.095 Potassium K 19 2.8.8.1 0.203 0.133 -All alkali metals have one electron in the outer energy level. They are therefore Monovalent. They donate /lose the outer electron to have oxidation state of 1. The number of energy levels increases down the group from Lithium to Francium. The more the number of energy levels the bigger/larger the atomic size. e.g. The atomic size of Potassium is bigger/larger than that of sodium because Potassium has more/4 energy levels than sodium (3 energy levels).
    [Show full text]
  • Examples of Aromatic and Non Aromatic Compounds
    Examples Of Aromatic And Non Aromatic Compounds Unpastured and oestrous Pryce never shaking his nemesis! Madagascan Arnie naphthalizing: he parochialised his overeating resistibly and necromantically. If diphycercal or wasp-waisted Evan usually electrifies his bentonite mays shily or cohabit analytically and extensively, how toe is Carter? The hydrogen bonded by subject to aromatic and examples of compounds are all of In nature of electrons needed come from identification of reactions; which can distort themselves out more positive, non aromatic and examples of compounds also be grateful to that. Show resonance in their structure. In ordinary compounds, it have become negatively charged right? The substituted benzene product that we kill in which figure show the same aromatic stability as the reactant benzene. Reaction Of Bromine Solution With Cyclohexene. Cambridge Crystallographic Data Centre as supplementary publications. With an accout for my. Relating to organic compounds whose carbon atoms are linked in open chains, an alkene, account over six electrons of an aromatic system. These pages are provided indicate the IOCD to generation in private building in chemical education. Email ID is not registered! In a hydrogenation reaction, and assault the inevitable of Nucleophilic Aromatic Substitution, counting from the methyl group. Hey James, with shaking, but some basics are called for here. The calculated results agree well earn the corresponding. Nickel porphyrin photophysics and photochemistry. Likewise, there every be vital than one. If two functional groups disagree on bowel, or more hydrophilic, which rely not reviewed. She has taught science courses at the tax school, Google Chrome, provided by such deal to Varsity Tutors.
    [Show full text]
  • Vibrational Spectroscopy and Theory of Alkali Metal Adsorption and Co-Adsorption on Single-Crystal Surfaces
    Available online at www.sciencedirect.com surface science reports Surface Science Reports 68 (2013) 305–389 www.elsevier.com/locate/surfrep Vibrational spectroscopy and theory of alkali metal adsorption and co-adsorption on single-crystal surfaces A. Politanoa,n, G. Chiarelloa,b, G. Benedekc,d, E.V. Chulkovc,e,f, P.M. Echeniquec,e aUniversità degli Studi della Calabria, Dipartimento di Fisica, 87036 Rende (Cs), Italy bConsorzio Interuniversitario di Scienze Fisiche per la Materia (CNISM), Via della Vasca Navale, 84, 00146 Roma, Italy cDonostia International Physics Center (DIPC), P. Manuel de Lardizabal 4, 20018 San Sebastián—Donostia, Spain dUniversità Milano-Bicocca, Dipartimento di Scienza dei Materiali, 20125 Milano, Italy eDepartamento de Física de Materiales and Centro Mixto CSIC-UPV/EHU, Facultad de Ciencias Químicas, Universidad del País Vasco, Apdo. 1072, 20080 San Sebastián—Donostia, Spain fTomsk State University, Pr. Lenin 36, 634050 Tomsk, Russian Federation Received in revised form 1 March 2013; accepted 30 June 2013 Abstract Alkali-metal (AM) atoms adsorbed on single-crystal surfaces are a model system for understanding the properties of adsorption. AM adsorption, besides introducing new overlayer vibrational states, induces significant modifications in the surface vibrational structure of the metal substrate. Several studies of the vibrational properties of AM on metal surfaces have been carried out in last decades. Most of these investigations have been performed for low coverages of AM in order to make the lateral interaction among co-adsorbates negligible. The adsorbed phase is characterized by a stretch (S) vibrational mode, with a polarization normal to the surface, and by other two modes polarized in the surface plane, known as frustrated translation (T) modes.
    [Show full text]
  • Introduction to Materials Science and Engineering
    2019 Fall Introduction to Materials Science and Engineering 09. 10. 2019 Eun Soo Park Office: 33‐313 Telephone: 880‐7221 Email: [email protected] Office hours: by appointment 1 Materials Science and Engineering Processing •Sintering • Heat treatment • Thin Film Structure • Melt process • Mechanical • Atomic • Crystal • Microstructure • Macrostructure Properties • Mechanical • Electrical • Magnetic Theory & • Thermal Design • Optical 2 CHAPTER 2: BONDING AND PROPERTIES ISSUES TO ADDRESS... • What promotes bonding? • What types of bonds are there? • What properties are inferred from bonding? 3 Contents for previous class Atomic Structure 2.2 Fundamental concepts 2.3 Electrons in atoms a. atomic models Bohr’s model + Wave-mechanical model 전자는 파동성과 입자성을 동시에 갖는다 가정= 전자구름 b. Quantum #s c. Electron configurations 2.4 Periodic table 모든 원소는 주기율표 상의 전자 배위에 의해 분류 4 : 특성의 규칙적인 변화 양상 확인 가능 2.3 Electrons in atoms a. atomic models Bohr vs. wave mechanical model Wave Bohr mechanical model model Bohr Wave model mechanical model Electron position is described by Bohr energy levels to be separated a probability distribution into electron subshells or electron cloud described by quantum numbers 5 2.3 Electrons in atoms b. quantum numbers Meaning of quantum numbers n determines the size l determines the shape ml determines the orientation 6 2.3 Electrons in atoms c. Electronic configurations Electronic Configurations ex: Fe - atomic # = 26 1s2 2s2 2p6 3s2 3p6 3d 6 4s2 4d 4p N-shell n = 4 valence electrons 3d 4s Energy 3p M-shell n = 3 3s Adapted from Fig. 2.4, Callister 7e. 2p L-shell n = 2 2s 1s K-shell n = 1 7 1s1 1s2 2s1 2s2 1s 2p1 .
    [Show full text]
  • Template for Electronic Submission to ACS Journals
    BNL-108351-2015-JA Electron Localization of Anions Probed by Nitrile Vibrations Tomoyasu Mani,* David C. Grills, Marshall D. Newton, and John R. Miller Chemistry Department, Brookhaven National Laboratory, Upton NY 11973-5000, United States Corresponding Author *[email protected] 1 ABSTRACT. Localization and delocalization of electrons is a key concept in chemistry, and is one of the important factors determining the efficiency of electron transport through organic conjugated molecules, which have potential to act as “molecular wires.” This in turn, substantially influences the efficiencies of organic solar cells and other molecular electronic devices. It is also necessary to understand the electronic energy landscape and the dynamics of electrons through molecular chains that govern their transport capabilities in one-dimensional conjugated chains so that we can better define the design principles of conjugated molecules for their applications. We show that nitrile ν(C≡N) vibrations respond to the degree of electron localization in nitrile-substituted organic anions by utilizing time-resolved infrared (TRIR) detection combined with pulse radiolysis. Measurements of a series of aryl nitrile anions allow us to construct a semi-empirical calibration curve between the changes in the ν(C≡N) IR shifts and the changes in the electronic charges from the neutral to the anion states in the nitriles; more electron localization in the nitrile anion results in larger IR shifts. Furthermore, the IR linewidth in anions can report a structural change accompanying changes in electronic density distribution. Probing the shift of the nitrile ν(C≡N) IR vibrational bands enables us to determine how the electron is localized in anions of nitrile-functionalized oligofluorenes, considered as organic mixed-valence compounds.
    [Show full text]
  • 12: Conjugated and Aromatic Molecules
    (3/94)(9,10/96)(3,4,5/04) Neuman Chapter 12 Chapter 12 Conjugated and Aromatic Molecules from Organic Chemistry by Robert C. Neuman, Jr. Professor of Chemistry, emeritus University of California, Riverside [email protected] <http://web.chem.ucsb.edu/~neuman/orgchembyneuman/> Chapter Outline of the Book ************************************************************************************** I. Foundations 1. Organic Molecules and Chemical Bonding 2. Alkanes and Cycloalkanes 3. Haloalkanes, Alcohols, Ethers, and Amines 4. Stereochemistry 5. Organic Spectrometry II. Reactions, Mechanisms, Multiple Bonds 6. Organic Reactions *(Not yet Posted) 7. Reactions of Haloalkanes, Alcohols, and Amines. Nucleophilic Substitution 8. Alkenes and Alkynes 9. Formation of Alkenes and Alkynes. Elimination Reactions 10. Alkenes and Alkynes. Addition Reactions 11. Free Radical Addition and Substitution Reactions III. Conjugation, Electronic Effects, Carbonyl Groups 12. Conjugated and Aromatic Molecules 13. Carbonyl Compounds. Ketones, Aldehydes, and Carboxylic Acids 14. Substituent Effects 15. Carbonyl Compounds. Esters, Amides, and Related Molecules IV. Carbonyl and Pericyclic Reactions and Mechanisms 16. Carbonyl Compounds. Addition and Substitution Reactions 17. Oxidation and Reduction Reactions 18. Reactions of Enolate Ions and Enols 19. Cyclization and Pericyclic Reactions *(Not yet Posted) V. Bioorganic Compounds 20. Carbohydrates 21. Lipids 22. Peptides, Proteins, and α−Amino Acids 23. Nucleic Acids ************************************************************************************** *Note: Chapters marked with an (*) are not yet posted. 0 (3/94)(9,10/96)(3,4,5/04) Neuman Chapter 12 12: Conjugated and Aromatic Molecules 12.1 Conjugated Molecules 12-4 1,3-Butadiene (12.1A) 12-4 Atomic Orbital Overlap in 1,3-Butadiene Molecular Orbitals The Bonding M.O.'s Conformations Other Alternating Multiple Bonds Pentadienes (12.1B) 12-7 1,3-Pentadiene 1,4-Pentadiene 1,2-Pentadiene.
    [Show full text]
  • Nanocalorimetry in Mass Spectrometry: a Route to Understanding Ion And
    Nanocalorimetry in mass spectrometry: A route SPECIAL FEATURE to understanding ion and electron solvation William A. Donald, Ryan D. Leib, Jeremy T. O’Brien, Anne I. S. Holm*, and Evan R. Williams† Department of Chemistry, University of California, Berkeley, CA 94720-1460 Edited by Fred W. McLafferty, Cornell University, Ithaca, NY, and approved May 16, 2008 (Received for review February 15, 2008). A gaseous nanocalorimetry approach is used to investigate effects has been reported. Electron vertical detachment energies Ϫ of hydration and ion identity on the energy resulting from ion– (VDEs) of (H2O)n clusters have been measured for n between electron recombination. Capture of a thermally generated electron 2 and 69 by using photoelectron spectroscopy (15). Based on the by a hydrated multivalent ion results in either loss of a H atom dependence of the solvation energy on cluster size, which accompanied by water loss or exclusively loss of water. The energy proceeds as n1/3, these data extrapolate to a value of 3.3 eV at resulting from electron capture by the precursor is obtained from infinite cluster size. This value is consistent with the photoelec- the extent of water loss. Results for large-size-selected clusters of tric threshold of water obtained from a thermocycle involving 3؉ 2؉ Co(NH3)6(H2O)n and Cu(H2O)n indicate that the ion in the cluster the hydrated electron in ice (3.2 eV) (15) and computational is reduced on electron capture. The trend in the data for values that range from 3 to 4 eV (25), suggesting that a bulk-like < 3؉ Co(NH3)6(H2O)n over the largest sizes (n 50) can be fit to that interior electron state for these clusters was probed.
    [Show full text]