Research Article Sodium Butyrate-Modulated Mitochondrial Function in High-Insulin Induced Hepg2 Cell Dysfunction
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Progressive Encephalopathy and Central Hypoventilation Related to Homozygosity of NDUFV1 Nuclear Gene, a Rare Mitochondrial Disease
Avens Publishing Group Inviting Innovations Open Access Case Report J Pediatr Child Care August 2019 Volume:5, Issue:1 © All rights are reserved by AL-Buali MJ, et al. AvensJournal Publishing of Group Inviting Innovations Progressive Encephalopathy Pediatrics & and Central Hypoventilation Child Care AL-Buali MJ*, Al Ramadhan S, Al Buali H, Al-Faraj J and Related to Homozygosity of Al Mohanna M Pediatric Department , Maternity Children Hospital , Saudi Arabia *Address for Correspondence: NDUFV1 Nuclear Gene, a Rare Al-buali MJ, Pediatric Consultant and Consultant of Medical Genetics, Deputy Chairman of Medical Genetic Unite, Pediatrics Department , Maternity Children Hospital, Al-hassa, Hofuf city, Mitochondrial Disease Saudi Arabia; E-mail: [email protected] Submission: 15 July 2019 Accepted: 5 August 2019 Keywords: Progressive encephalopathy; Central hypoventilation; Published: 9 August 2019 Nuclear mitochondrial disease; NDUFV1 gene Copyright: © 2019 AL-Buali MJ, et al. This is an open access article distributed under the Creative Commons Attribution License, which Abstract permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background: Mitochondrial diseases are a group of disorders caused by dysfunctional organelles that generate energy for our body. Mitochondria small double-membrane organelles found in of the most common groups of genetic diseases with a minimum every cell of the human body except red blood cells. Mitochondrial diseases are sometimes caused by mutations in the mitochondrial DNA prevalence of greater than 1 in 5000 in adults. Mitochondrial diseases that affect mitochondrial function. Other mitochondrial diseases are can be present at birth but can be manifested also at any age [2]. -
High-Throughput, Pooled Sequencing Identifies Mutations in NUBPL And
ARTICLES High-throughput, pooled sequencing identifies mutations in NUBPL and FOXRED1 in human complex I deficiency Sarah E Calvo1–3,10, Elena J Tucker4,5,10, Alison G Compton4,10, Denise M Kirby4, Gabriel Crawford3, Noel P Burtt3, Manuel Rivas1,3, Candace Guiducci3, Damien L Bruno4, Olga A Goldberger1,2, Michelle C Redman3, Esko Wiltshire6,7, Callum J Wilson8, David Altshuler1,3,9, Stacey B Gabriel3, Mark J Daly1,3, David R Thorburn4,5 & Vamsi K Mootha1–3 Discovering the molecular basis of mitochondrial respiratory chain disease is challenging given the large number of both mitochondrial and nuclear genes that are involved. We report a strategy of focused candidate gene prediction, high-throughput sequencing and experimental validation to uncover the molecular basis of mitochondrial complex I disorders. We created seven pools of DNA from a cohort of 103 cases and 42 healthy controls and then performed deep sequencing of 103 candidate genes to identify 151 rare variants that were predicted to affect protein function. We established genetic diagnoses in 13 of 60 previously unsolved cases using confirmatory experiments, including cDNA complementation to show that mutations in NUBPL and FOXRED1 can cause complex I deficiency. Our study illustrates how large-scale sequencing, coupled with functional prediction and experimental validation, can be used to identify causal mutations in individual cases. Complex I of the mitochondrial respiratory chain is a large ~1-MDa assembly factors are probably required, as suggested by the 20 factors macromolecular machine composed of 45 protein subunits encoded necessary for assembly of the smaller complex IV9 and by cohort by both the nuclear and mitochondrial (mtDNA) genomes. -
In Vitro Treatment of Hepg2 Cells with Saturated Fatty Acids Reproduces
© 2015. Published by The Company of Biologists Ltd | Disease Models & Mechanisms (2015) 8, 183-191 doi:10.1242/dmm.018234 RESEARCH ARTICLE In vitro treatment of HepG2 cells with saturated fatty acids reproduces mitochondrial dysfunction found in nonalcoholic steatohepatitis Inmaculada García-Ruiz1,*, Pablo Solís-Muñoz2, Daniel Fernández-Moreira3, Teresa Muñoz-Yagüe1 and José A. Solís-Herruzo1 ABSTRACT INTRODUCTION Activity of the oxidative phosphorylation system (OXPHOS) is Nonalcoholic fatty liver disease (NAFLD) represents a spectrum of decreased in humans and mice with nonalcoholic steatohepatitis. liver diseases extending from pure fatty liver through nonalcoholic Nitro-oxidative stress seems to be involved in its pathogenesis. The steatohepatitis (NASH) to cirrhosis and hepatocarcinoma that occurs aim of this study was to determine whether fatty acids are implicated in individuals who do not consume a significant amount of alcohol in the pathogenesis of this mitochondrial defect. In HepG2 cells, we (Matteoni et al., 1999). Although the pathogenesis of NAFLD analyzed the effect of saturated (palmitic and stearic acids) and remains undefined, the so-called ‘two hits’ model of pathogenesis monounsaturated (oleic acid) fatty acids on: OXPHOS activity; levels has been proposed (Day and James, 1998). Whereas the ‘first hit’ of protein expression of OXPHOS complexes and their subunits; gene involves the accumulation of fat in the liver, the ‘second hit’ expression and half-life of OXPHOS complexes; nitro-oxidative stress; includes oxidative stress resulting in inflammation, stellate cell and NADPH oxidase gene expression and activity. We also studied the activation, fibrogenesis and progression of NAFLD to NASH effects of inhibiting or silencing NADPH oxidase on the palmitic-acid- (Chitturi and Farrell, 2001). -
Health Effects Support Document for Perfluorooctanoic Acid (PFOA)
United States Office of Water EPA 822-R-16-003 Environmental Protection Mail Code 4304T May 2016 Agency Health Effects Support Document for Perfluorooctanoic Acid (PFOA) Perfluorooctanoic Acid – May 2016 i Health Effects Support Document for Perfluorooctanoic Acid (PFOA) U.S. Environmental Protection Agency Office of Water (4304T) Health and Ecological Criteria Division Washington, DC 20460 EPA Document Number: 822-R-16-003 May 2016 Perfluorooctanoic Acid – May 2016 ii BACKGROUND The Safe Drinking Water Act (SDWA), as amended in 1996, requires the Administrator of the U.S. Environmental Protection Agency (EPA) to periodically publish a list of unregulated chemical contaminants known or anticipated to occur in public water systems and that may require regulation under SDWA. The SDWA also requires the Agency to make regulatory determinations on at least five contaminants on the Contaminant Candidate List (CCL) every 5 years. For each contaminant on the CCL, before EPA makes a regulatory determination, the Agency needs to obtain sufficient data to conduct analyses on the extent to which the contaminant occurs and the risk it poses to populations via drinking water. Ultimately, this information will assist the Agency in determining the most appropriate course of action in relation to the contaminant (e.g., developing a regulation to control it in drinking water, developing guidance, or deciding not to regulate it). The PFOA health assessment was initiated by the Office of Water, Office of Science and Technology in 2009. The draft Health Effects Support Document for Perfluoroctanoic Acid (PFOA) was completed in 2013 and released for public comment in February 2014. -
Cytochrome P450 Enzymes but Not NADPH Oxidases Are the Source of the MARK NADPH-Dependent Lucigenin Chemiluminescence in Membrane Assays
Free Radical Biology and Medicine 102 (2017) 57–66 Contents lists available at ScienceDirect Free Radical Biology and Medicine journal homepage: www.elsevier.com/locate/freeradbiomed Cytochrome P450 enzymes but not NADPH oxidases are the source of the MARK NADPH-dependent lucigenin chemiluminescence in membrane assays Flávia Rezendea, Kim-Kristin Priora, Oliver Löwea, Ilka Wittigb, Valentina Streckerb, Franziska Molla, Valeska Helfingera, Frank Schnütgenc, Nina Kurrlec, Frank Wempec, Maria Waltera, Sven Zukunftd, Bert Luckd, Ingrid Flemingd, Norbert Weissmanne, ⁎ ⁎ Ralf P. Brandesa, , Katrin Schrödera, a Institute for Cardiovascular Physiology, Goethe-University, Frankfurt, Germany b Functional Proteomics, SFB 815 Core Unit, Goethe-Universität, Frankfurt, Germany c Institute for Molecular Hematology, Goethe-University, Frankfurt, Germany d Institute for Vascular Signaling, Goethe-University, Frankfurt, Germany e University of Giessen, Lung Center, Giessen, Germany ARTICLE INFO ABSTRACT Keywords: Measuring NADPH oxidase (Nox)-derived reactive oxygen species (ROS) in living tissues and cells is a constant NADPH oxidase challenge. All probes available display limitations regarding sensitivity, specificity or demand highly specialized Nox detection techniques. In search for a presumably easy, versatile, sensitive and specific technique, numerous Lucigenin studies have used NADPH-stimulated assays in membrane fractions which have been suggested to reflect Nox Chemiluminescence activity. However, we previously found an unaltered activity with these assays in triple Nox knockout mouse Superoxide (Nox1-Nox2-Nox4-/-) tissue and cells compared to wild type. Moreover, the high ROS production of intact cells Reactive oxygen species Membrane assays overexpressing Nox enzymes could not be recapitulated in NADPH-stimulated membrane assays. Thus, the signal obtained in these assays has to derive from a source other than NADPH oxidases. -
Original Article Extracellular-Vesicles Derived from Human Wharton-Jelly Mesenchymal Stromal Cells Ameliorated Cyclosporin A-Induced Renal Fibrosis in Rats
Int J Clin Exp Med 2019;12(7):8943-8949 www.ijcem.com /ISSN:1940-5901/IJCEM0091514 Original Article Extracellular-vesicles derived from human Wharton-Jelly mesenchymal stromal cells ameliorated cyclosporin A-induced renal fibrosis in rats Guangyuan Zhang1, Shuyang Yu3, Si Sun1, Lei Zhang1, Guangli Zhang4, Kai Xu1, Yuxiao Zheng1,2, Qin Xue4, Ming Chen1 1Department of Urology, Zhongda Hospital, Southeast University, Nanjing 210009, China; 2Department of Urologic Surgery, Jiangsu Cancer Hospital & Jiangsu Institute of Cancer Research & Affiliated Cancer Hospital of Nanjing Medical University, Nanjing 210009, China; 3Department of Radiology, Dezhou United Hospital, Dezhou 253017, Shandong, China; 4Department of Nephrology, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, Shanghai 200233, China Received January 19, 2019; Accepted April 11, 2019; Epub July 15, 2019; Published July 30, 2019 Abstract: Objective: To observe the therapeutic effects of human Wharton-Jelly mesenchymal stromal cells derived extracellular vesicles (MSCs-EVs) for cyclosporin-A-induced renal injury in rats and further to investigate the mecha- nism. Methods: EVs from MSCs were made using the ultra-centrifugation method. The cyclosporin A-induced renal injury model in rats was set up, and MSCs-EVs were administrated at d7 and d21 intravenously. The animals were sacrificed at d28, and the serum and kidneys were obtained. Renal fibrosis was assessed using Masson’s staining and α-SMA IHC staining. Renal function was determined using serum creatinine. The SOD and malondialdehyde (MDA) in the renal tissues were also assayed. In vitro, HK2 cells were injured by CsA for 24 h as well as incubated with MSCs-EVs administration, and ROS and α-SMA expression were assessed. -
Supplementary Materials
Supplementary Materials COMPARATIVE ANALYSIS OF THE TRANSCRIPTOME, PROTEOME AND miRNA PROFILE OF KUPFFER CELLS AND MONOCYTES Andrey Elchaninov1,3*, Anastasiya Lokhonina1,3, Maria Nikitina2, Polina Vishnyakova1,3, Andrey Makarov1, Irina Arutyunyan1, Anastasiya Poltavets1, Evgeniya Kananykhina2, Sergey Kovalchuk4, Evgeny Karpulevich5,6, Galina Bolshakova2, Gennady Sukhikh1, Timur Fatkhudinov2,3 1 Laboratory of Regenerative Medicine, National Medical Research Center for Obstetrics, Gynecology and Perinatology Named after Academician V.I. Kulakov of Ministry of Healthcare of Russian Federation, Moscow, Russia 2 Laboratory of Growth and Development, Scientific Research Institute of Human Morphology, Moscow, Russia 3 Histology Department, Medical Institute, Peoples' Friendship University of Russia, Moscow, Russia 4 Laboratory of Bioinformatic methods for Combinatorial Chemistry and Biology, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia 5 Information Systems Department, Ivannikov Institute for System Programming of the Russian Academy of Sciences, Moscow, Russia 6 Genome Engineering Laboratory, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia Figure S1. Flow cytometry analysis of unsorted blood sample. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S2. Flow cytometry analysis of unsorted liver stromal cells. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S3. MiRNAs expression analysis in monocytes and Kupffer cells. Full-length of heatmaps are presented. -
The Human Flavoproteome
CORE Metadata, citation and similar papers at core.ac.uk Provided by Elsevier - Publisher Connector Archives of Biochemistry and Biophysics 535 (2013) 150–162 Contents lists available at SciVerse ScienceDirect Archives of Biochemistry and Biophysics journal homepage: www.elsevier.com/locate/yabbi Review The human flavoproteome ⇑ Wolf-Dieter Lienhart, Venugopal Gudipati, Peter Macheroux Graz University of Technology, Institute of Biochemistry, Petersgasse 12, A-8010 Graz, Austria article info abstract Article history: Vitamin B2 (riboflavin) is an essential dietary compound used for the enzymatic biosynthesis of FMN and Received 17 December 2012 FAD. The human genome contains 90 genes encoding for flavin-dependent proteins, six for riboflavin and in revised form 21 February 2013 uptake and transformation into the active coenzymes FMN and FAD as well as two for the reduction to Available online 15 March 2013 the dihydroflavin form. Flavoproteins utilize either FMN (16%) or FAD (84%) while five human flavoen- zymes have a requirement for both FMN and FAD. The majority of flavin-dependent enzymes catalyze Keywords: oxidation–reduction processes in primary metabolic pathways such as the citric acid cycle, b-oxidation Coenzyme A and degradation of amino acids. Ten flavoproteins occur as isozymes and assume special functions in Coenzyme Q the human organism. Two thirds of flavin-dependent proteins are associated with disorders caused by Folate Heme allelic variants affecting protein function. Flavin-dependent proteins also play an important role in the Pyridoxal 50-phosphate biosynthesis of other essential cofactors and hormones such as coenzyme A, coenzyme Q, heme, pyri- Steroids doxal 50-phosphate, steroids and thyroxine. Moreover, they are important for the regulation of folate Thyroxine metabolites by using tetrahydrofolate as cosubstrate in choline degradation, reduction of N-5.10-meth- Vitamins ylenetetrahydrofolate to N-5-methyltetrahydrofolate and maintenance of the catalytically competent form of methionine synthase. -
Biophysics News
NEWSLETTER VOLUME 5, ISSUE 1 | WINTER 2020 BIOPHYSICS NEWS SCIENCE FEATURE SEMINAR SERIES Sean McGarry, biophysics graduate student in the LaViolette lab, discusses his Our Spring 2020 Graduate Seminar Se- research interests. ries takes place most Fridays through- My research interests lie in translating My research has evolved to focus on out the semester, from 9:30–10:30 am. machine learning techniques into clini- quantifying the effects of these sources Please join us! cal practice in a manner that improves of variability on the generalizability of Jan 17 | Rodney Willoughby, MD inter-user reliability. The LaViolette lab machine learning algorithms. The LaVi- (MCW), Gaseous microintoxication by works in a subfield called rad-path (ra- olette lab acquired a dataset of whole invasive bacteria diology-pathology) correlation. We align mount prostate slides annotated by five Jan 24 | Sarah Erickson-Bhatt, PhD post-surgical tissue samples with in vivo pathologists, and we used this dataset to (Marquette), Bioimaging of cancer clinical imaging and write pattern detec- demonstrate that inter-observer vari- tion algorithms that predict histological ability can have a substantial effect on Jan 31 | Sean McGarry (MCW), Prostate characteristics noninvasively. the predictive power of a downstream cancer detection with multi-parametric MRI Many sources of variability outside of the machine learning algorithm. We com- parameters of interest can influence the piled a dataset of diffusion fits from 13 Feb 14 | Jon M. Fukuto, PhD (Sonoma output of a machine learning algorithm, institutions and examined the effects of State), The chemical biology of hydrop- particularly in magnetic resonance imag- post-processing decisions on the per- ersulfides: Possible cellular protecting ing. -
THE FUNCTIONAL SIGNIFICANCE of MITOCHONDRIAL SUPERCOMPLEXES in C. ELEGANS by WICHIT SUTHAMMARAK Submitted in Partial Fulfillment
THE FUNCTIONAL SIGNIFICANCE OF MITOCHONDRIAL SUPERCOMPLEXES in C. ELEGANS by WICHIT SUTHAMMARAK Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Dissertation Advisor: Drs. Margaret M. Sedensky & Philip G. Morgan Department of Genetics CASE WESTERN RESERVE UNIVERSITY January, 2011 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. Dedicated to my family, my teachers and all of my beloved ones for their love and support ii ACKNOWLEDGEMENTS My advanced academic journey began 5 years ago on the opposite side of the world. I traveled to the United States from Thailand in search of a better understanding of science so that one day I can return to my homeland and apply the knowledge and experience I have gained to improve the lives of those affected by sickness and disease yet unanswered by science. Ultimately, I hoped to make the academic transition into the scholarly community by proving myself through scientific research and understanding so that I can make a meaningful contribution to both the scientific and medical communities. The following dissertation would not have been possible without the help, support, and guidance of a lot of people both near and far. I wish to thank all who have aided me in one way or another on this long yet rewarding journey. My sincerest thanks and appreciation goes to my advisors Philip Morgan and Margaret Sedensky. -
NDUFS8 Antibody Cat
NDUFS8 Antibody Cat. No.: 43-249 NDUFS8 Antibody Specifications HOST SPECIES: Goat SPECIES REACTIVITY: Human, Mouse HOMOLOGY: Expected Species Reactivity based on sequence homology: Rat, Dog, Cow IMMUNOGEN: The immunogen for this antibody is: C-AEPRADGSRR TESTED APPLICATIONS: ELISA, WB Peptide ELISA: antibody detection limit dilution 1:2000.Western Blot:Approx 25kDa band observed in Human and Mouse Heart lysates (calculated MW of 23.7kDa according to NP_002487.1). Recommended concentration: 0.1-0.3ug/ml. An additional fainter band of APPLICATIONS: 90kDa was consistently observed, however this band was not blocked by the immunizing peptide and it is therefore a non-specific signal. We call for caution when used for other assays than Western blot. PREDICTED MOLECULAR Approx 25kDa WEIGHT: Properties Purified from goat serum by ammonium sulphate precipitation followed by antigen PURIFICATION: affinity chromatography using the immunizing peptide. CLONALITY: Polyclonal September 25, 2021 1 https://www.prosci-inc.com/ndufs8-antibody-43-249.html CONJUGATE: Unconjugated PHYSICAL STATE: Liquid Supplied at 0.5 mg/ml in Tris saline, 0.02% sodium azide, pH7.3 with 0.5% bovine serum BUFFER: albumin. Aliquot and store at -20°C. Minimize freezing and thawing. CONCENTRATION: 500 ug/mL STORAGE CONDITIONS: Aliquot and store at -20˚C. Minimize freezing and thawing. Additional Info OFFICIAL SYMBOL: NDUFS8 NDUFS8, NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q ALTERNATE NAMES: reductase), CI23KD, TYKY, NADH dehydrogenase ubiquinone Fe-S 8, NADH-ubiquinone oxidoreductase 23 kDa subunit, complex I-23kD ACCESSION NO.: NP_002487.1 PROTEIN GI NO.: 4505371 GENE ID: 4728 Background and References 1) Saito A, Kawamoto M, Kamatani N, Association study between single-nucleotide REFERENCES: polymorphisms in 199 drug-related genes and commonly measured quantitative traits of 752 healthy Japanese subjects. -
NMDA Receptor-Mediated Camkii/ERK Activation Contributes
Zhou et al. BMC Nephrology (2020) 21:392 https://doi.org/10.1186/s12882-020-02050-x RESEARCH ARTICLE Open Access NMDA receptor-mediated CaMKII/ERK activation contributes to renal fibrosis Jingyi Zhou1,2,3,4†, Shuaihui Liu1,2,3,4†, Luying Guo1,2,3,4, Rending Wang1,2,3,4, Jianghua Chen1,2,3,4* and Jia Shen1,2,3,4* Abstract Background: This study aimed to understand the mechanistic role of N-methyl-D-aspartate receptor (NMDAR) in acute fibrogenesis using models of in vivo ureter obstruction and in vitro TGF-β administration. Methods: Acute renal fibrosis (RF) was induced in mice by unilateral ureteral obstruction (UUO). Histological changes were observed using Masson’s trichrome staining. The expression levels of NR1, which is the functional subunit of NMDAR, and fibrotic and epithelial-to-mesenchymal transition markers were measured by immunohistochemical and Western blot analysis. HK-2 cells were incubated with TGF-β, and NMDAR antagonist MK-801 and Ca2+/calmodulin-dependent protein kinase II (CaMKII) antagonist KN-93 were administered for pathway determination. Chronic RF was introduced by sublethal ischemia–reperfusion injury in mice, and NMDAR inhibitor dextromethorphan hydrobromide (DXM) was administered orally. Results: The expression of NR1 was upregulated in obstructed kidneys, while NR1 knockdown significantly reduced both interstitial volume expansion and the changes in the expression of α-smooth muscle actin, S100A4, fibronectin, COL1A1, Snail, and E-cadherin in acute RF. TGF-β1 treatment increased the elongation phenotype of HK-2 cells and the expression of membrane-located NR1 and phosphorylated CaMKII and extracellular signal– regulated kinase (ERK).