CHEMICAL REPRESENTATION BIOVIA DATABASES 9.5 Copyright Notice ©2015 Dassault Systèmes. All rights reserved. 3DEXPERIENCE, the Compass icon and the 3DS logo, CATIA, SOLIDWORKS, ENOVIA, DELMIA, SIMULIA, GEOVIA, EXALEAD, 3D VIA, BIOVIA and NETVIBES are commercial trademarks or registered trademarks of Dassault Systèmes or its subsidiaries in the U.S. and/or other countries. All other trademarks are owned by their respective owners. Use of any Dassault Systèmes or its subsidiaries trademarks is subject to their express written approval. Acknowledgments and References To print photographs or files of computational results (figures and/or data) obtained using BIOVIA software, acknowledge the source in an appropriate format. BIOVIA may grant permission to republish or reprint its copyrighted materials. Requests should be submitted to BIOVIA Support, either through electronic mail to
[email protected], or in writing to: BIOVIA Support 5005 Wateridge Vista Drive, San Diego, CA 92121 USA No-Structures 28 Contents Chapter 2: Reaction Representation 29 Introduction 29 Overview 1 Reaction Mapping 29 Audience for this Guide 1 Mapping Reactions Automatically 30 Prerequisite knowledge 1 Mapping Reactions Manually 31 Related BIOVIA Documentation 1 Stereoconfiguration Atom Properties in Chapter 1: Molecule Representation 3 Mapped Reactions 32 Substances, structures and fragments 3 Properties of Bonds in Mapped Reactions 32 The BIOVIA Periodic Table 3 Simple Bond Properties 32 Atom Properties 3 Combined Bond Properties 33 Charges, Radicals and Isotopes