Post-Metamorphic Skeletal Growth in the Sea Urchin Paracentrotus Lividus
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Echinoidea Clypeasteroidea
Biodiversity Journal, 2014, 5 (2): 291–358 Analysis of some astriclypeids (Echinoidea Clypeast- eroida) Paolo Stara1* & Luigi Sanciu2 1Centro Studi di Storia Naturale del Mediterraneo - Museo di Storia Naturale Aquilegia, Via Italia 63, Pirri-Cagliari and Geomuseo Monte Arci, Masullas, Oristano, Sardinia, Italy; e-mail: [email protected] *Corresponding author The systematic position of some astriclypeid species assigned through times to the genera Amphiope L. Agassiz, 1840 and Echinodiscus Leske, 1778 is reviewed based on the plating ABSTRACT pattern characteristics of these two genera universally accepted, and on the results of new studies. A partial re-arrangement of the family Astriclypeidae Stefanini, 1912 is herein pro- posed, with the institution of Sculpsitechinus n. g. and Paraamphiope n. g., both of them char- acterized by a peculiar plating-structure of the interambulacrum 5 and of the ambulacra I and V. Some species previously attributed to Amphiope and Echinodiscus are transferred into these two new genera. Two new species of Astriclypeidae are established: Echinodiscus andamanensis n. sp. and Paraamphiope raimondii n. sp. Neotypes are proposed for Echin- odiscus tenuissimus L. Agassiz, 1840 and E. auritus Leske, 1778, since these species were still poorly defined, due to the loss of the holotypes and, for E. auritus, also to the unclear geographical/stratigraphical information about the type-locality. A number of additional nom- inal fossil and extant species of "Echinodiscus" needs revision based on the same method. KEY WORDS Astriclypeidae; Amphiope; Paraamphiope; Echinodiscus; Sculpsitechinus; Oligo-Miocene. Received 28.02.2014; accepted 14.03.2014; printed 30.06.2014 Paolo Stara (ed.). Studies on some astriclypeids (Echinoidea Clypeasteroida), pp. -
Taxonomía Y Biogeografía Ecológica De Los Equinoideos Irregulares (Echinoidea: Irregularia) De México
Taxonomía y biogeografía ecológica de los equinoideos irregulares (Echinoidea: Irregularia) de México Alejandra Martínez-Melo1, 2, Francisco Alonso Solís-Marín2, Blanca Estela Buitrón-Sánchez3 & Alfredo Laguarda-Figueras2 1. Posgrado de Ciencias del Mar y Limnología (PCML), Universidad Nacional Autónoma de México (UNAM). México, D. F. 04510, México; [email protected] 2. Laboratorio de Sistemática y Ecología de Equinodermos, Instituto de Ciencias del Mar y Limnología (ICML), UNAM. Apdo. Post. 70-305, México, D. F. 04510, México; [email protected] 3. Departamento de Paleontología, Instituto de Geología (IG), UNAM, Cd. Universitaria, Delegación Coyoacán, México, D. F. 04510, México; [email protected] Recibido 04-VI-2014. Corregido 09-X-2014. Aceptado 04-XI-2014. Abstract: Taxonomy and ecologic biogeography of the irregular Echinoids (Echinoidea: Irregularia) from Mexico. Mexico owns 643 species of echinoderms, almost 10% of the known echinoderm species in the planet. Its geographic location -between the oceanic influences of the Western Central Atlantic and the Eastern Central Pacific- largely explains its enormous biological and ecological diversity. Research on echinoderms in Mexico began in the late nineteenth century; however, there are no reviews on its irregular echinoids. This work reviews the taxonomic and geographic information of irregular echinoids from Mexico, housed in four collections: 1) Colección Nacional de Equinodermos “Ma. Elena Caso Muñoz” from the Instituto de Ciencias del Mar y Limnología (ICML), Universidad Nacional Autónoma de México (UNAM); 2) Invertebrate Zoology Collection, Smithsonian Museum of Natural History, Washington, D.C., United States of America (USA); 3) Invertebrate Collection, Museum of Comparative Zoology, University of Harvard, Boston, Massachusetts, USA and 4) Invertebrate Zoology, Peabody Museum, Yale University, New Haven, Connecticut, USA. -
Ecophenotypic Variation and Developmental Instability in the Late Cretaceous Echinoid Micraster Brevis (Irregularia; Spatangoida)
RESEARCH ARTICLE Ecophenotypic Variation and Developmental Instability in the Late Cretaceous Echinoid Micraster brevis (Irregularia; Spatangoida) Nils Schlüter* Georg-August University of Göttingen, Geoscience Centre, Department of Geobiology, Goldschmidtstr. 3, 37077, Göttingen, Germany * [email protected] Abstract The Late Cretaceous echinoid genus Micraster (irregular echinoids, Spatangoida) is one of the most famous examples of a continuous evolutionary lineage in invertebrate palaeontol- ogy. The influence of the environment on the phenotype, however, was not tested so far. OPEN ACCESS This study analyses differences in phenotypical variations within three populations of Micra- Citation: Schlüter N (2016) Ecophenotypic Variation ster (Gibbaster) brevis from the early Coniacian, two from the Münsterland Cretaceous and Developmental Instability in the Late Cretaceous Basin (Germany) and one from the North Cantabrian Basin (Spain). The environments of Echinoid Micraster brevis (Irregularia; Spatangoida). the Spanish and the German sites differed by their sedimentary characteristics, which are PLoS ONE 11(2): e0148341. doi:10.1371/journal. pone.0148341 generally a crucial factor for morphological adaptations in echinoids. Most of the major phe- notypical variations (position of the ambitus, periproct and development of the subanal fas- Editor: Steffen Kiel, Naturhistoriska riksmuseet, SWEDEN ciole) among the populations can be linked to differences in their host sediments. These phenotypic variations are presumed to be an expression of phenotpic plasticiy, which has Received: November 11, 2015 not been considered in Micraster in previous studies. Two populations (Erwitte area, Ger- Accepted: January 15, 2016 many; Liencres area, Spain) were tested for stochastic variation (fluctuating asymmetry) Published: February 5, 2016 due to developmental instability, which was present in all studied traits. -
CLASSIFICATION of ECHINODERMATA: -- Subclass 3
P a g e | 1 Dr. Minakshi Kumari B.Sc. Part-I P.G. Dept. Of Zoology, Zoology (Hons.) Maharaja College, ARA. Paper – I– A. Contd..... CLASSIFICATION OF ECHINODERMATA: -- Subclass 3. Irregularia 1. Body oval or circular, flattened oral-aborally. 2. Mouth central or displaced anteriorly on oral surface. 3. Anus marginal, outside the apical system of plates. 4. Tube feet generally not locomotor. Order 1. Holectypoida 1. Test regular with simple ambulacral and centrally located peristome and apical system. 2. Lantern present. 3. Mostly extinct. Examples : Holectypus, Echinoneus. Order 2. Cassiduloida 1. Aboral ambulacral areas petaloid, forming a five-armed figure like petals of a flower. 2. Lantern absent. 3. Mostly extinct. Examples : Cassidulus P a g e | 2 Order 3. Clypeastroida 1. Test flattened with oval or rounded shape. 2. Mouth central, anus excentric. 3. Aboral ambulacral areas petaloid. 4. Aristotle's lantern present. 5. Gills absent. 6. Bottom dwellers. Examples: Sand dollars : Clypeaster, Echinarachinus. Order 4. Spatangoida 1. Test oval or heart-shaped with excentric mouth and anus. 2. Four aboral ambulacral areas pataloid. 3. Lantern absent. 4. Gills absent. 5. Burrowing. Examples : Heart urchins; Spatangus, Echinocardium lovenia, Hemipneustes. P CLASS 4. Holothuroidea (Gr., holothurion, sea cucumber + eidos, form) 1. Sea cucumbers. 2. No arms and no spines. 3. Body elongate on oral-aboral axis, body wall leathery. P a g e | 3 4. Mouth anterior, surrounded by tentacles. 5. Ambulacral grooves concealed , tube feet with suckers. 6. Usually with respiratory tree for respiration. Order 1. Dendrochirota 1. Tentacles irregularly branched. 2. Tube feet numerous, on the sole or all ambulacral or entire surface. -
X-Ray Microct Study of Pyramids of the Sea Urchin Lytechinus Variegatus
Journal of Structural Biology Journal of Structural Biology 141 (2003) 9–21 www.elsevier.com/locate/yjsbi X-ray microCT study of pyramids of the sea urchin Lytechinus variegatus S.R. Stock,a,* S. Nagaraja,b J. Barss,c T. Dahl,c and A. Veisc a Institute for Bioengineering and Nanoscience in Advanced Medicine, Northwestern University, 303 E. Chicago Avenue, Tarry 16-717, Chicago, IL 60611-3008, USA b School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA c Department of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA Received 19 June 2002, and in revised form 23 September 2002 Abstract This paper reports results of a novel approach, X-ray microCT, for quantifying stereom structures applied to ossicles of the sea urchin Lytechinus variegatus. MicroCT, a high resolution variant of medical CT (computed tomography), allows noninvasive mapping of microstructure in 3-D with spatial resolution approaching that of optical microscopy. An intact pyramid (two demi- pyramids, tooth epiphyses, and one tooth) was reconstructed with 17 lm isotropic voxels (volume elements); two individual demipyramids and a pair of epiphyses were studied with 9–13 lm isotropic voxels. The cross-sectional maps of a linear attenuation coefficient produced by the reconstruction algorithm showed that the structure of the ossicles was quite heterogeneous on the scale of tens to hundreds of micrometers. Variations in magnesium content and in minor elemental constitutents could not account for the observed heterogeneities. Spatial resolution was insufficient to resolve the individual elements of the stereom, but the observed values of the linear attenuation coefficient (for the 26 keV effective X-ray energy, a maximum of 7.4 cmÀ1 and a minimum of 2cmÀ1 away from obvious voids) could be interpreted in terms of fractions of voxels occupied by mineral (high magnesium calcite). -
DNA Variation and Symbiotic Associations in Phenotypically Diverse Sea Urchin Strongylocentrotus Intermedius
DNA variation and symbiotic associations in phenotypically diverse sea urchin Strongylocentrotus intermedius Evgeniy S. Balakirev*†‡, Vladimir A. Pavlyuchkov§, and Francisco J. Ayala*‡ *Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697-2525; †Institute of Marine Biology, Vladivostok 690041, Russia; and §Pacific Research Fisheries Centre (TINRO-Centre), Vladivostok, 690600 Russia Contributed by Francisco J. Ayala, August 20, 2008 (sent for review May 9, 2008) Strongylocentrotus intermedius (A. Agassiz, 1863) is an economically spines of the U form are relatively short; the length, as a rule, does important sea urchin inhabiting the northwest Pacific region of Asia. not exceed one third of the radius of the testa. The spines of the G The northern Primorye (Sea of Japan) populations of S. intermedius form are longer, reaching and frequently exceeding two thirds of the consist of two sympatric morphological forms, ‘‘usual’’ (U) and ‘‘gray’’ testa radius. The testa is significantly thicker in the U form than in (G). The two forms are significantly different in morphology and the G form. The morphological differences between the U and G preferred bathymetric distribution, the G form prevailing in deeper- forms of S. intermedius are stable and easily recognizable (Fig. 1), water settlements. We have analyzed the genetic composition of the and they are systematically reported for the northern Primorye S. intermedius forms using the nucleotide sequences of the mitochon- coast region (V.A.P., unpublished data). drial gene encoding the cytochrome c oxidase subunit I and the Little is known about the population genetics of S. intermedius; nuclear gene encoding bindin to evaluate the possibility of cryptic the available data are limited to allozyme polymorphisms (4–6). -
SI Appendix for Hopkins, Melanie J, and Smith, Andrew B
Hopkins and Smith, SI Appendix SI Appendix for Hopkins, Melanie J, and Smith, Andrew B. Dynamic evolutionary change in post-Paleozoic echinoids and the importance of scale when interpreting changes in rates of evolution. Corrections to character matrix Before running any analyses, we corrected a few errors in the published character matrix of Kroh and Smith (1). Specifically, we removed the three duplicate records of Oligopygus, Haimea, and Conoclypus, and removed characters C51 and C59, which had been excluded from the phylogenetic analysis but mistakenly remain in the matrix that was published in Appendix 2 of (1). We also excluded Anisocidaris, Paurocidaris, Pseudocidaris, Glyphopneustes, Enichaster, and Tiarechinus from the character matrix because these taxa were excluded from the strict consensus tree (1). This left 164 taxa and 303 characters for calculations of rates of evolution and for the principal coordinates analysis. Other tree scaling methods The most basic method for scaling a tree using first appearances of taxa is to make each internal node the age of its oldest descendent ("stand") (2), but this often results in many zero-length branches which are both theoretically questionable and in some cases methodologically problematic (3). Several methods exist for modifying zero-length branches. In the case of the results shown in Figure 1, we assigned a positive length to each zero-length branch by having it share time equally with a preceding, non-zero-length branch (“equal”) (4). However, we compared the results from this method of scaling to several other methods. First, we compared this with rates estimated from trees scaled such that zero-length branches share time proportionally to the amount of character change along the branches (“prop”) (5), a variation which gave almost identical results as the method used for the “equal” method (Fig. -
Sea Urchins As an Inspiration for Robotic Designs
Sea urchins as an inspiration for robotic designs Article Published Version Creative Commons: Attribution 4.0 (CC-BY) Open Access Stiefel, K. and Barrett, G. (2018) Sea urchins as an inspiration for robotic designs. Journal of Marine Science and Engineering, 6 (4). 112. ISSN 2077-1312 doi: https://doi.org/10.3390/jmse6040112 Available at http://centaur.reading.ac.uk/79763/ It is advisable to refer to the publisher’s version if you intend to cite from the work. See Guidance on citing . To link to this article DOI: http://dx.doi.org/10.3390/jmse6040112 Publisher: MDPI All outputs in CentAUR are protected by Intellectual Property Rights law, including copyright law. Copyright and IPR is retained by the creators or other copyright holders. Terms and conditions for use of this material are defined in the End User Agreement . www.reading.ac.uk/centaur CentAUR Central Archive at the University of Reading Reading’s research outputs online Journal of Marine Science and Engineering Review Sea Urchins as an Inspiration for Robotic Designs Klaus M. Stiefel 1,2,3 and Glyn A. Barrett 3,4,* 1 Neurolinx Research Institute, La Jolla, CA 92039, USA; [email protected] 2 Marine Science Institute, University of the Philippines, Dilliman, Quezon City 1101, Philippines 3 People and the Sea, Malapascua, Daanbantayan, Cebu 6000, Philippines 4 School of Biological Sciences, University of Reading, Reading RG6 6UR, UK * Correspondence: [email protected]; Tel.: +44-(0)-118-378-8893 Received: 25 August 2018; Accepted: 4 October 2018; Published: 10 October 2018 Abstract: Neuromorphic engineering is the approach to intelligent machine design inspired by nature. -
The Gut Microbiome of the Sea Urchin, Lytechinus Variegatus, from Its Natural Habitat Demonstrates Selective Attributes of Micro
FEMS Microbiology Ecology, 92, 2016, fiw146 doi: 10.1093/femsec/fiw146 Advance Access Publication Date: 1 July 2016 Research Article RESEARCH ARTICLE The gut microbiome of the sea urchin, Lytechinus variegatus, from its natural habitat demonstrates selective attributes of microbial taxa and predictive metabolic profiles Joseph A. Hakim1,†, Hyunmin Koo1,†, Ranjit Kumar2, Elliot J. Lefkowitz2,3, Casey D. Morrow4, Mickie L. Powell1, Stephen A. Watts1,∗ and Asim K. Bej1,∗ 1Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, AL 35294, USA, 2Center for Clinical and Translational Sciences, University of Alabama at Birmingham, Birmingham, AL 35294, USA, 3Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA and 4Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, 1918 University Blvd., Birmingham, AL 35294, USA ∗Corresponding authors: Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, CH464, Birmingham, AL 35294-1170, USA. Tel: +1-(205)-934-8308; Fax: +1-(205)-975-6097; E-mail: [email protected]; [email protected] †These authors contributed equally to this work. One sentence summary: This study describes the distribution of microbiota, and their predicted functional attributes, in the gut ecosystem of sea urchin, Lytechinus variegatus, from its natural habitat of Gulf of Mexico. Editor: Julian Marchesi ABSTRACT In this paper, we describe the microbial composition and their predictive metabolic profile in the sea urchin Lytechinus variegatus gut ecosystem along with samples from its habitat by using NextGen amplicon sequencing and downstream bioinformatics analyses. The microbial communities of the gut tissue revealed a near-exclusive abundance of Campylobacteraceae, whereas the pharynx tissue consisted of Tenericutes, followed by Gamma-, Alpha- and Epsilonproteobacteria at approximately equal capacities. -
Late Cretaceous Echinoids from the Seymareh Member (Lopha Limestone Member), Kabir Kuh Anticline, Southwest of Iran
Archive of SID Geopersia 9 (2), 2019, PP. 305-350 DOI: 10.22059/GEOPE.2019.266795.648419 Late Cretaceous Echinoids from the Seymareh Member (Lopha Limestone Member), Kabir Kuh Anticline, Southwest of Iran Hossein Kamyabi Shadan1*, Hooshang Dashtban1, Bagher Roshandel Arbatani1, Fariba Foroughi2 1 Exploration Directorate, National Iranian Oil Company, Tehran, Iran 2 Department of Geology, Faculty of Sciences, University of Tehran, Tehran, Iran *Corresponding author, e–mail: [email protected] (received: 18/11/2018 ; accepted: 04/03/2019) Abstract In the present study, The Seymareh or Lopha Limestone Member (Gurpi Formation) in Kabir Kuh Section, have been Selected. The member has yielded a rich echinoid fauna and 21 species of Echinoid belonging to 14 genera are recognized and described. The Kabir Kuh section yielded two regular echinoid taxa: Salenia nutrix and Goniopygus superbus, one holectypoid taxa: Coptodiscus noemiae, two conulid taxa: Conulus douvillei and Globator bleicheri, six cassiduloid taxa: Parapygus longior, Parapygus declivis, Parapygus inflatus, Parapygus vassilini, Vologesia tataosi and Pygurostoma morgani, one holasteroid species: Hemipneustes persicus and nine spatangoid taxa: Iraniaster douvillei, I. morgani, I. nodulosus, Hemiaster noemiae, Hemiaster opimus, Mecaster kanepanensis, Mecaster longus, Proraster morgani and Epiaster lamberti. The taxon association indicates a Campanian age. Some of the taxa are known from the similar Campanian age in Saudi Arabia such as: Coptodiscus noemiae. Some specimens are reported also from Campanian deposits of Afghanistan such as: Hemiaster noemiae, H. opimus and Parapygus vassilini. Globator bleicheri and Salenia nutrix are recorded from Maastrichtian deposits of UAE and Oman. Keywords: Campanian, Echinoid, Kabir Kuh, Seymareh member, Southwest Iran. Introduction Acropeltidae, Holectypidae, Conulidae, Cassiduloida Echinoids are among the most conspicuous and , Holasteroid and Spatangoida. -
Tool Use by Four Species of Indo-Pacific Sea Urchins Glyn Barrett1,2, Dominic Revell1, Lucy Harding1, Ian Mills1, Axelle Jorcin1, Klaus M
bioRxiv preprint doi: https://doi.org/10.1101/347914; this version posted June 15, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Tool use by four species of Indo-Pacific sea urchins Glyn Barrett1,2, Dominic Revell1, Lucy Harding1, Ian Mills1, Axelle Jorcin1, Klaus M. Stiefel1,3,4* 1. People and the Sea, Malapascua Island, Daanbantayan, Cebu, Philippines 2. School of Biological Sciences, University of Reading, UK. 3. Neurolinx Research Institute, La Jolla, CA, USA 4. Marine Science Institute, University of the Philippines, Dilliman, Quezon City, Philippines. *Corresponding author, [email protected] Abstract We compared the covering behavior of four sea urchin species, Tripneustes gratilla, Pseudoboletia maculata, Toxopneutes pileolus, and Salmacis sphaeroides found in the waters of Malapascua Island, Cebu Province and Bolinao, Panagsinan Province, Philippines. Specifically, we measured the amount and type of covering material on each urchin, and, in several cases, the recovery of debris cover after stripping the animal of its cover. We found that Tripneustes gratilla and Salmacis sphaeroides have a higher preference for plant material, especially sea-grass, compared to Pseudoboletia maculata and Toxopneutes pileolus, which prefer to cover themselves with coral rubble and other calcified material. Only for Toxopneutes pileolus did we find a decrease in cover with depth, confirming previous work that the covering behavior serves UV protection. We found no dependence of particle size on either species or urchin size, but we observed that larger urchins carried more and heavier debris.