HUMERAL HOMOLOGY and the ORIGIN of the TETRAPOD ELBOW: a REINTERPRETATION of the ENIGMATIC SPECIMENS ANSP 21350 and GSM 104536 by PER E
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Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Evolution by Natural Selection, Formulated Independently by Charles Darwin and Alfred Russel Wallace
UNIT 4 EVOLUTIONARY PATT EVOLUTIONARY E RNS AND PROC E SS E Evolution by Natural S 22 Selection Natural selection In this chapter you will learn that explains how Evolution is one of the most populations become important ideas in modern biology well suited to their environments over time. The shape and by reviewing by asking by applying coloration of leafy sea The rise of What is the evidence for evolution? Evolution in action: dragons (a fish closely evolutionary thought two case studies related to seahorses) 22.1 22.4 are heritable traits that with regard to help them to hide from predators. The pattern of evolution: The process of species have changed evolution by natural and are related 22.2 selection 22.3 keeping in mind Common myths about natural selection and adaptation 22.5 his chapter is about one of the great ideas in science: the theory of evolution by natural selection, formulated independently by Charles Darwin and Alfred Russel Wallace. The theory explains how T populations—individuals of the same species that live in the same area at the same time—have come to be adapted to environments ranging from arctic tundra to tropical wet forest. It revealed one of the five key attributes of life: Populations of organisms evolve. In other words, the heritable characteris- This chapter is part of the tics of populations change over time (Chapter 1). Big Picture. See how on Evolution by natural selection is one of the best supported and most important theories in the history pages 516–517. of scientific research. -
Many but Not All Lineage-Specific Genes Can Be Explained by Homology Detection Failure
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.27.968420; this version posted April 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Many but not all lineage-specific genes can be explained by homology detection failure Caroline M. Weisman1, Andrew W. Murray1, Sean R. Eddy1,2,3 1 Department of Molecular & Cellular Biology, 2 Howard Hughes Medical Institute, 3 John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge MA, USA Abstract Genes for which homologs can be detected only in a limited group of evolutionarily related species, called “lineage-specific genes,” are pervasive: essentially every lineage has them, and they often comprise a sizable fraction of the group’s total genes. Lineage-specific genes are often interpreted as “novel” genes, representing genetic novelty born anew within that lineage. Here, we develop a simple method to test an alternative null hypothesis: that lineage-specific genes do have homologs outside of the lineage that, even while evolving at a constant rate in a novelty-free manner, have merely become undetectable by search algorithms used to infer homology. We show that this null hypothesis is sufficient to explain the lack of detected homologs of a large number of lineage-specific genes in fungi and insects. However, we also find that a minority of lineage-specific genes in both clades are not well-explained by this novelty- free model. -
Tetrapod Biostratigraphy and Biochronology of the Triassic–Jurassic Transition on the Southern Colorado Plateau, USA
Palaeogeography, Palaeoclimatology, Palaeoecology 244 (2007) 242–256 www.elsevier.com/locate/palaeo Tetrapod biostratigraphy and biochronology of the Triassic–Jurassic transition on the southern Colorado Plateau, USA Spencer G. Lucas a,⁎, Lawrence H. Tanner b a New Mexico Museum of Natural History, 1801 Mountain Rd. N.W., Albuquerque, NM 87104-1375, USA b Department of Biology, Le Moyne College, 1419 Salt Springs Road, Syracuse, NY 13214, USA Received 15 March 2006; accepted 20 June 2006 Abstract Nonmarine fluvial, eolian and lacustrine strata of the Chinle and Glen Canyon groups on the southern Colorado Plateau preserve tetrapod body fossils and footprints that are one of the world's most extensive tetrapod fossil records across the Triassic– Jurassic boundary. We organize these tetrapod fossils into five, time-successive biostratigraphic assemblages (in ascending order, Owl Rock, Rock Point, Dinosaur Canyon, Whitmore Point and Kayenta) that we assign to the (ascending order) Revueltian, Apachean, Wassonian and Dawan land-vertebrate faunachrons (LVF). In doing so, we redefine the Wassonian and the Dawan LVFs. The Apachean–Wassonian boundary approximates the Triassic–Jurassic boundary. This tetrapod biostratigraphy and biochronology of the Triassic–Jurassic transition on the southern Colorado Plateau confirms that crurotarsan extinction closely corresponds to the end of the Triassic, and that a dramatic increase in dinosaur diversity, abundance and body size preceded the end of the Triassic. © 2006 Elsevier B.V. All rights reserved. Keywords: Triassic–Jurassic boundary; Colorado Plateau; Chinle Group; Glen Canyon Group; Tetrapod 1. Introduction 190 Ma. On the southern Colorado Plateau, the Triassic– Jurassic transition was a time of significant changes in the The Four Corners (common boundary of Utah, composition of the terrestrial vertebrate (tetrapod) fauna. -
Early Tetrapod Relationships Revisited
Biol. Rev. (2003), 78, pp. 251–345. f Cambridge Philosophical Society 251 DOI: 10.1017/S1464793102006103 Printed in the United Kingdom Early tetrapod relationships revisited MARCELLO RUTA1*, MICHAEL I. COATES1 and DONALD L. J. QUICKE2 1 The Department of Organismal Biology and Anatomy, The University of Chicago, 1027 East 57th Street, Chicago, IL 60637-1508, USA ([email protected]; [email protected]) 2 Department of Biology, Imperial College at Silwood Park, Ascot, Berkshire SL57PY, UK and Department of Entomology, The Natural History Museum, Cromwell Road, London SW75BD, UK ([email protected]) (Received 29 November 2001; revised 28 August 2002; accepted 2 September 2002) ABSTRACT In an attempt to investigate differences between the most widely discussed hypotheses of early tetrapod relation- ships, we assembled a new data matrix including 90 taxa coded for 319 cranial and postcranial characters. We have incorporated, where possible, original observations of numerous taxa spread throughout the major tetrapod clades. A stem-based (total-group) definition of Tetrapoda is preferred over apomorphy- and node-based (crown-group) definitions. This definition is operational, since it is based on a formal character analysis. A PAUP* search using a recently implemented version of the parsimony ratchet method yields 64 shortest trees. Differ- ences between these trees concern: (1) the internal relationships of aı¨stopods, the three selected species of which form a trichotomy; (2) the internal relationships of embolomeres, with Archeria -
Phylogeny of Basal Tetrapoda
Stuart S. Sumida Biology 342 Phylogeny of Basal Tetrapoda The group of bony fishes that gave rise to land-dwelling vertebrates and their descendants (Tetrapoda, or colloquially, “tetrapods”) was the lobe-finned fishes, or Sarcopterygii. Sarcoptrygii includes coelacanths (which retain one living form, Latimeria), lungfish, and crossopterygians. The transition from sarcopterygian fishes to stem tetrapods proceeded through a series of groups – not all of which are included here. There was no sharp and distinct transition, rather it was a continuum from very tetrapod-like fishes to very fish-like tetrapods. SARCOPTERYGII – THE LOBE-FINNED FISHES Includes •Actinista (including Coelacanths) •Dipnoi (lungfishes) •Crossopterygii Crossopterygians include “tetrapods” – 4- legged land-dwelling vertebrates. The Actinista date back to the Devonian. They have very well developed lobed-fins. There remains one livnig representative of the group, the coelacanth, Latimeria chalumnae. A lungfish The Crossopterygii include numerous representatives, the best known of which include Eusthenopteron (pictured here) and Panderichthyes. Panderichthyids were the most tetrapod-like of the sarcopterygian fishes. Panderichthyes – note the lack of dorsal fine, but retention of tail fin. Coelacanths Lungfish Rhizodontids Eusthenopteron Panderichthyes Tiktaalik Ventastega Acanthostega Ichthyostega Tulerpeton Whatcheeria Pederpes More advanced amphibians Tiktaalik roseae – a lobe-finned fish intermediate between typical sarcopterygians and basal tetrapods. Mid to Late Devonian; 375 million years old. The back end of Tiktaalik’s skull is intermediate between fishes and tetrapods. Tiktaalik is a fish with wrist bones, yet still retaining fin rays. The posture of Tiktaalik’s fin/limb is intermediate between that of fishes an tetrapods. Coelacanths Lungfish Rhizodontids Eusthenopteron Panderichthyes Tiktaalik Ventastega Acanthostega Ichthyostega Tulerpeton Whatcheeria Pederpes More advanced amphibians Reconstructions of the basal tetrapod Ventastega. -
Convergent Evolution
Exploring the KU Natural History Museum Convergent Evolution Target Audience: Middle school and above Differentiated Instruction Summary Strategy Levels Content/Process/Product Grouping(s) Learning modalities Whole group • Level 1 – Visual (spatial) Small groups Process Cubing Level 2 – Kinesthetic (physical) Peer partners • Product • Level 3 – Verbal (linguistic) Homogeneous Heterogeneous * Varied grouping options can be used for this activity, depending on student needs and chaperone ability. Objectives: Explore examples of convergent evolution in vertebrates. Pre-assessment/Prior Knowledge: Prior to their visit, students should be familiar with the idea of convergent evolution, overall evolutionary relationships/classification of vertebrate groups and basic anatomy of those groups. Activity Description: Students explore the idea of convergent evolution through museum exhibits through different learning modalities. Materials Needed: • Student o Cubes (three levels, see attached) o Paper and pencils (alternatively you could use flipchart paper and markers, whiteboards and dry erase markers) o Optional (cell phones or other recording device for visual or kinesthetic levels) Note: Format to record/present findings determined by individual teacher. Provide clear instructions about expectations for documenting participation, particularly for verbal/spatial and body/kinesthetic levels (e.g. stage direction, audio/video recording). • Teacher o Content Outline o Cube labels o Cube template Content: Convergence Overview Convergent evolution refers to the similarities in biological traits that arise independently in organisms that are not closely related, e.g. wings in birds, bats and insects. Similarity among organisms and their structures that was not inherited from a common ancestor is considered to be homoplasy. This can be contrasted with homology, which refers to similarity of traits due to common ancestry. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Evolution of the Muscular System in Tetrapod Limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2
Hirasawa and Kuratani Zoological Letters (2018) 4:27 https://doi.org/10.1186/s40851-018-0110-2 REVIEW Open Access Evolution of the muscular system in tetrapod limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2 Abstract While skeletal evolution has been extensively studied, the evolution of limb muscles and brachial plexus has received less attention. In this review, we focus on the tempo and mode of evolution of forelimb muscles in the vertebrate history, and on the developmental mechanisms that have affected the evolution of their morphology. Tetrapod limb muscles develop from diffuse migrating cells derived from dermomyotomes, and the limb-innervating nerves lose their segmental patterns to form the brachial plexus distally. Despite such seemingly disorganized developmental processes, limb muscle homology has been highly conserved in tetrapod evolution, with the apparent exception of the mammalian diaphragm. The limb mesenchyme of lateral plate mesoderm likely plays a pivotal role in the subdivision of the myogenic cell population into individual muscles through the formation of interstitial muscle connective tissues. Interactions with tendons and motoneuron axons are involved in the early and late phases of limb muscle morphogenesis, respectively. The mechanism underlying the recurrent generation of limb muscle homology likely resides in these developmental processes, which should be studied from an evolutionary perspective in the future. Keywords: Development, Evolution, Homology, Fossils, Regeneration, Tetrapods Background other morphological characters that may change during The fossil record reveals that the evolutionary rate of growth. Skeletal muscles thus exhibit clear advantages vertebrate morphology has been variable, and morpho- for the integration of paleontology and evolutionary logical deviations and alterations have taken place unevenly developmental biology. -
The 'Role' a Concept Plays in Science — the Case of Homology
The ‘Role’ a Concept Plays in Science — The Case of Homology INGO BRIGANDT Department of History and Philosophy of Science University of Pittsburgh 1017 Cathedral of Learning Pittsburgh, PA 15260 USA E-mail: [email protected] August 19, 2001 Abstract. This article tries to clarify the idea that a concept plays a certain role for a scientific field or a research program. The discussion is based on a case study of the homology concept in biology. In particular, I examine how homology plays a different role for comparative, developmental, and molecular biology. The aspects that may constitute the role of a concept emerge from this discussion. Introduction This paper deals with concepts and conceptual change in science by trying to shed some light on the idea that a concept plays a certain ‘role’ for a scientific field or a research approach. My original motivation to address this topic stems from semantic considerations. I disagree with standard causal theories of reference because they do not take conceptual change in science and its reasons seriously. Causal theories often have a somewhat static (in fact preformationist) understanding of concepts (our belief about the referent is usually considered to change), and they often look to the wrong place if they have to account for apparent changes in meaning. Instead, my idea is to focus on the role a concept plays — when the role of a scientific concept changes, then we have a change in meaning of this term. This is an approach that is neither a THE ‘ROLE’ A CONCEPT PLAYS IN SCIENCE 2 causal nor a descriptive theory of reference, and it is able to keep change of meaning and change of theory apart — not every change of theory amounts to a new role for a concept. -
Tetrapod Phylogeny
© J989 Elsevier Science Publishers B. V. (Biomédical Division) The Hierarchy of Life B. Fernholm, K. Bremer and H. Jörnvall, editors 337 CHAPTER 25 Tetrapod phylogeny JACQUES GAUTHIER', DAVID CANNATELLA^, KEVIN DE QUEIROZ^, ARNOLD G. KLUGE* and TIMOTHY ROWE^ ' Deparlmenl qf Herpelology, California Academy of Sciences, San Francisco, CA 94118, U.S.A., ^Museum of Natural Sciences and Department of Biology, Louisiana State University, Baton Rouge, LA 70803, U.S.A., ^Department of ^oology and Museum of Vertebrate ^oology. University of California, Berkeley, CA 94720, U.S.A., 'Museum of ^oology and Department of Biology, University of Michigan, Ann Arbor, MI 48109, U.S.A. and ^Department of Geological Sciences, University of Texas, Austin, TX 78713, U.S.A. Introduction Early sarcopterygians were aquatic, but from the latter part of the Carboniferous on- ward that group has been dominated by terrestrial forms commonly known as the tet- rapods. Fig. 1 illustrates relationships among extant Tetrápoda [1-4J. As the clado- grams in Figs. 2•20 demonstrate, however, extant groups represent only a small part of the taxonomic and morphologic diversity of Tetrápoda. We hope to convey some appreciation for the broad outlines of tetrapod evolution during its 300+ million year history from late Mississippian to Recent times. In doing so, we summarize trees de- rived from the distribution of over 972 characters among 83 terminal taxa of Tetrápo- da. More than 90% of the terminal taxa we discuss are extinct, but all of the subter- minal taxa are represented in the extant biota. This enables us to emphasize the origins of living tetrapod groups while giving due consideration to the diversity and antiquity of the clades of which they are a part. -
Body Plans and the Diversity of Life
Body Plans and the Diversity of Life 36-149 The Tree of Life Christopher R. Genovese Department of Statistics 132H Baker Hall x8-7836 http://www.stat.cmu.edu/~genovese/ . The Body Plan Concept • Body plans form an idealized, overlapping hierarchy of \types" containing groups of organisms. • Analogy: Watersheds • These relate strongly to intuitive/folk categories of living things. • They also relate to features during the gestational development of the organism. • We will see that the concept has critical limitations, but it is a useful starting point in our thinking about how to organize life's diversity. 36-149 The Tree of Life Class #1 -1- Two Inspirations for the \Body Plan" Concept 1. In the 1840s, Richard Owen noticed the similar structures underlying the organs and bones of different species. He saw these similarities as the manifestation of an \archetype" { an idealized, standard body plan for a group of animals. (Owen was one of the premier comparative anatomists of his day, the namer of Dinosaurs, and a character we'll meet again.) 36-149 The Tree of Life Class #1 -2- 36-149 The Tree of Life Class #1 -3- 36-149 The Tree of Life Class #1 -4- Two Inspirations for \Body Plan" (cont'd) 2. In the late 1820s, Karl Ernst von Baer studied the development of animal embryos and concluded that \[t]he general features of a large group of animals appear earlier in the embryo than the special features." That is, in the early states of embryonic development, related animals are highly similar, but they diverge as development proceeds and distinguishing features are added.