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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Western Indicators of Cull in Oregon Conifers
United States Department of Agriculture Indicators of Cull in Forest Service Pacific Northwest Forest andRange Western Oregon Experiment Station General Technical Report PNW-1 44 Conifers September 1982 Paul E. Aho This file was created by scanning the printed publication. Mis-scans identified by the software have been corrected; however, some errors may remain. Author PAUL E. AH0 is a research plant pathologist, Pacific Northwest Forest and Range Experiment Station, Forestry Sciences Laboratory, 3200 Jefferson Way, Corvallis, Oregon 97331. Abstract Contents Aho, Paul E. Indicators of cull in 1 Introduction western Oregon conifers. Gen. 1 Defect Indicators Tech. Rep. PNW-144. Portland, OR: U.S. Department of Agriculture, 2 Decay Fungi Forest Service, Pacific Northwest 2 Red Ring Rot Forest and Range Experiment Station; 1982. 17 p. 4 Red Ring Rot (var. cancriforrnans) 5 Rust-Red Stringy Rot Descriptions and color photographs of 6 Brown Trunk Rot important fungal sporophores (conks), other indicators of cull (wounds), and 7 Red-Brown Butt Rot associated decays in western Oregon 8 Yellow Laminated Rot conifers are provided to aid timber markers, cruisers, and scalers in 9 White Spongy Rot identifying them. Cull factors are given 10 Mottled Rot for the indicators by tree species. 10 Yellow Pitted Rot Keywords: Cull logs, decay (wood), 11 Brown Crumbly Rot timber cruising, log scaling, coniferae, 12 Brown Cubical Rot western Oregon. 12 Brown Top Rot 13 Pencil Rot 14 Injuries Indicating Associated Defect 14 Basal Injuries 14 Trunk Injuries 14 Frost Cracks 15 Top Injuries 15 Forks 15 Crooks 16 Swollen Butts 16 Dwarf Mistletoe Cankers 16 Additional Souces of Information 17 Appendix Introduction Defect Indicators Timber cruisers and scalers must be Type and age of all kinds of wounds Two gene;al types of defect indicators able to estimate net volumes of stand- can be used to determine presence and are: ing trees and bucked logs accurately. -
Phylogeny and Historical Biogeography of True Morels
Fungal Genetics and Biology 48 (2011) 252–265 Contents lists available at ScienceDirect Fungal Genetics and Biology journal homepage: www.elsevier.com/locate/yfgbi Phylogeny and historical biogeography of true morels (Morchella) reveals an early Cretaceous origin and high continental endemism and provincialism in the Holarctic ⇑ Kerry O’Donnell a, , Alejandro P. Rooney a, Gary L. Mills b, Michael Kuo c, Nancy S. Weber d, Stephen A. Rehner e a Bacterial Foodborne Pathogens and Mycology Research Unit, National Center for Agricultural Utilization Research, US Department of Agriculture, Agricultural Research Service, 1815 North University Street, Peoria, IL 61604, United States b Diversified Natural Products, Scottville, MI 49454, United States c Department of English, Eastern Illinois University, Charleston, IL 61920, United States d Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, United States e Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, United States article info summary Article history: True morels (Morchella, Ascomycota) are arguably the most highly-prized of the estimated 1.5 million Received 15 June 2010 fungi that inhabit our planet. Field guides treat these epicurean macrofungi as belonging to a few species Accepted 21 September 2010 with cosmopolitan distributions, but this hypothesis has not been tested. Prompted by the results of a Available online 1 October 2010 growing number of molecular studies, which have shown many microbes exhibit strong biogeographic structure and cryptic speciation, we constructed a 4-gene dataset for 177 members of the Morchellaceae Keywords: to elucidate their origin, evolutionary diversification and historical biogeography. -
The Mycological Society of San Francisco • Jan. 2016, Vol. 67:05
The Mycological Society of San Francisco • Jan. 2016, vol. 67:05 Table of Contents JANUARY 19 General Meeting Speaker Mushroom of the Month by K. Litchfield 1 President Post by B. Wenck-Reilly 2 Robert Dale Rogers Schizophyllum by D. Arora & W. So 4 Culinary Corner by H. Lunan 5 Hospitality by E. Multhaup 5 Holiday Dinner 2015 Report by E. Multhaup 6 Bizarre World of Fungi: 1965 by B. Sommer 7 Academic Quadrant by J. Shay 8 Announcements / Events 9 2015 Fungus Fair by J. Shay 10 David Arora’s talk by D. Tighe 11 Cultivation Quarters by K. Litchfield 12 Fungus Fair Species list by D. Nolan 13 Calendar 15 Mushroom of the Month: Chanterelle by Ken Litchfield Twenty-One Myths of Medicinal Mushrooms: Information on the use of medicinal mushrooms for This month’s profiled mushroom is the delectable Chan- preventive and therapeutic modalities has increased terelle, one of the most distinctive and easily recognized mush- on the internet in the past decade. Some is based on rooms in all its many colors and meaty forms. These golden, yellow, science and most on marketing. This talk will look white, rosy, scarlet, purple, blue, and black cornucopias of succu- at 21 common misconceptions, helping separate fact lent brawn belong to the genera Cantharellus, Craterellus, Gomphus, from fiction. Turbinellus, and Polyozellus. Rather than popping up quickly from quiescent primordial buttons that only need enough rain to expand About the speaker: the preformed babies, Robert Dale Rogers has been an herbalist for over forty these mushrooms re- years. He has a Bachelor of Science from the Univer- quire an extended period sity of Alberta, where he is an assistant clinical profes- of slower growth and sor in Family Medicine. -
Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
Forest Fungi in Ireland
FOREST FUNGI IN IRELAND PAUL DOWDING and LOUIS SMITH COFORD, National Council for Forest Research and Development Arena House Arena Road Sandyford Dublin 18 Ireland Tel: + 353 1 2130725 Fax: + 353 1 2130611 © COFORD 2008 First published in 2008 by COFORD, National Council for Forest Research and Development, Dublin, Ireland. All rights reserved. No part of this publication may be reproduced, or stored in a retrieval system or transmitted in any form or by any means, electronic, electrostatic, magnetic tape, mechanical, photocopying recording or otherwise, without prior permission in writing from COFORD. All photographs and illustrations are the copyright of the authors unless otherwise indicated. ISBN 1 902696 62 X Title: Forest fungi in Ireland. Authors: Paul Dowding and Louis Smith Citation: Dowding, P. and Smith, L. 2008. Forest fungi in Ireland. COFORD, Dublin. The views and opinions expressed in this publication belong to the authors alone and do not necessarily reflect those of COFORD. i CONTENTS Foreword..................................................................................................................v Réamhfhocal...........................................................................................................vi Preface ....................................................................................................................vii Réamhrá................................................................................................................viii Acknowledgements...............................................................................................ix -
Taxonomic Revision of True Morels (<I>Morchella</I>) in Canada And
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Agriculture: Agricultural Publications from USDA-ARS / UNL Faculty Research Service, Lincoln, Nebraska 2012 Taxonomic revision of true morels (Morchella) in Canada and the United States Michael Kuo Eastern Illinois University Damon R. Dewsbury University of Toronto Kerry O'Donnell USDA-ARS M. Carol Carter Stephen A. Rehner USDA-ARS, [email protected] See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub Kuo, Michael; Dewsbury, Damon R.; O'Donnell, Kerry; Carter, M. Carol; Rehner, Stephen A.; Moore, John David; Moncalvo, Jean-Marc; Canfield, Stephen A.; Stephenson, Steven L.; Methven, Andrew S.; and Volk, Thomas J., "Taxonomic revision of true morels (Morchella) in Canada and the United States" (2012). Publications from USDA-ARS / UNL Faculty. 1564. https://digitalcommons.unl.edu/usdaarsfacpub/1564 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Michael Kuo, Damon R. Dewsbury, Kerry O'Donnell, M. Carol Carter, Stephen A. Rehner, John David Moore, Jean-Marc Moncalvo, Stephen A. Canfield, Steven L. Stephenson, Andrew S. Methven, and Thomas J. Volk This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/ usdaarsfacpub/1564 Mycologia, 104(5), 2012, pp. 1159–1177. DOI: 10.3852/11-375 # 2012 by The Mycological Society of America, Lawrence, KS 66044-8897 Taxonomic revision of true morels (Morchella) in Canada and the United States Michael Kuo M. -
Substantial Decay in Pacific Silver Fir Caused by Hericium Abietis
Substantial Decay in Pacific Silver Fir Caused by Hericium abietis GREGORY M. FILIP, Plant Pathologist, and ALAN M. KANASKIE and SUSAN J. FRANKEL, Biological Technicians, Forest Pest Management, Pacific Northwest Region, USDA Forest Service, Portland, OR 97208 each sample. Each chip was placed in a ABSTRACT culture tube containing 2% malt agar Filip, G. M., Kanaskie, A. M., and Frankel, S. J. 1984. Substantial decay in Pacific silver fir caused with 1 /pg/g of benomyl. Cultures were by Hericium abietis. Plant Disease 68:992-993. incubated for 6 wk at room temperatures made Fifty-three Pacific silver firs (Abies amabilis) were felled and examined for external indicators and in the dark, then attempts were extent and cause of advanced decay on the Olympic Peninsula of Washington. Total volume of the Center for Forest Mycology Research, 3 decayed wood was 3.1% (M ) and 10.4% (board-foot). Most of the decay was caused by Hericium Madison, WI, to identify all basidio- abietis (34.4%) and Echinodontium tinctorium (20.5%). H. abietis in Pacific silver fir has never mycetes to species. been reported to cause this high a proportion of total decay. Decay caused by H. abietis was not associated with typical decay indicators (ie, conks, wounds, or top damage). RESULTS AND DISCUSSION Fifty-three Pacific silver firs were examined for external indicators and Only one study done in British was calculated by ring count and extent and cause of advanced decay Columbia (4) provides information diameter by measuring 1.4 m above the (Table 1). Total volumes of decayed 3 concerning long-pocket rot caused by ground. -
AR TICLE Diversity of Chroogomphus (Gomphidiaceae, Boletales) In
doi:10.5598/imafungus.2018.09.02.04 IMA FUNGUS · Diversity of ( , ) in Europe, and Chroogomphus Gomphidiaceae Boletales ARTICLE [C. rutilus Ross Scambler1,6, Tuula Niskanen1, Boris Assyov2, A. Martyn Ainsworth1, Jean-Michel Bellanger3, Michael Loizides4 , Pierre- Arthur Moreau5, Paul M. Kirk1, and Kare Liimatainen1 1Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK; corresponding author e-mail: [email protected] 2!"#$"%'*+'///<'" 3UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919, route de Mende, F-34293 Montpellier Cedex 5, France 4P.O. box 58499, 3734 Limassol, Cyprus 5Université de Lille, Fac. Pharma. Lille, EA 4483 IMPECS, F – 59000 Lille, France 6 Present address :Department of Applied Sciences, University of the West of England, Frenchay Campus, Coldharbour Lane, Bristol, BS16 1QY, UK In this study, eight species of Chroogomphus are recognized from Europe: C. britannicus, C. aff. [ 1, C. fulmineus, C. cf. helveticus, C. mediterraneus, C. cf. purpurascens, C. rutilus, and C. subfulmineus. DNA barcode Different candidates for the application of the name C. rutilus[ ITS =>Chroogomphus fulmineus and C. mediterraneus are molecular systematics [C. subfulmineus?[ new taxa a new subgenus Siccigomphus and three new sections, Confusi, Filiformes, and Fulminei are introduced. The taxonomy former sections Chroogomphus and Floccigomphus are elevated to subgeneric level. Comparison of the ITS X[%!?'/\]'!?'*[ of 1.5 %, with the exception of the two species belonging to sect. Fulminei which differ by a minimum of 0.9 %. Ecological specimen data indicate that species of Chroogomphus form basidiomes under members of Pinaceae, with a general preference for species of Pinus. Five European species have been recorded under Picea, while Abies and Larix have also been recorded as tree associates, although the detailed nutritional relationships of the Submitted: 27 November 2017; Accepted: 27 August 2018; Published: 5 September 2018. -
Insects and Diseases of Alaskan Forests
Historic, archived document Do not assume content reflects current scientific knowledge, policies, or practices. : \ b07Z7'0 Insects and Diseases of Alaskan Forests PC , mc ac ~ i Insects and Diseases of Alaskan Forests By Edward H. Holsten, Entomologist, State and Private Forestry, USDA Forest Service, Anchorage, Alaska; v Richard A. Werner, Research Entomologist, Institute of Northern Forestry, USDA Forest Service, Fairbanks, Alaska; Thomas H. Laurent, Pathologist, State and Private Forestry, USDA Forest Service, Juneau, Alaska. or Sale by the Superintendent of Documents, U.S. Government Printing Offii Washington, D.C., 20402 Acknowledgments The authors wish to extend their appreciation to the follow- ing individuals for their technical review of the manuscript: Drs. Donald C. Schmiege and Charles "Terry" Shaw, Forestry Sciences Laboratory, USDA Forest Service, Juneau, Alaska; Dr. Andris Eglitis, Forest Insect and Disease Management (FIDM), USDA Forest Service, Juneau, Alaska; Dr. Robert Keisling, Seward Skill Center, Seward Alaska; Dr. Torolf R. Torgersen, USDA Forest Service, Corvallis, Oregon; John Hard, FIDM, USDA Forest Service, Missoula, Montana; Drs. Thomas E. Hinds and John M. Schmid, USDA Forest Service, Fort Collins, Colorado; and Calvin Kerr, Public Services Forester, Dept. of Natural Resources, State of Alaska. Photographs and other illustrations were obtained, as credited in the Appendix, from individuals and from the files of the Canadian Forestry Service and the USDA Forest Service. iv Preface The USDA Forest Service publication, "Identification of Destructive Alaska Forest Insects" (Hard 1967), dealt mair.ly with the more damaging forest insects of southeastern Alaska. Since then, our information on forest insects and diseases from south-central and interior Alaska has increased. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
AR TICLE Diversity of Chroogomphus (Gomphidiaceae, Boletales)
doi:10.5598/imafungus.2018.09.02.04 IMA FUNGUS · 9(2): 271–290 (2018) Diversity of Chroogomphus (Gomphidiaceae, Boletales) in Europe, and ARTICLE typification ofC. rutilus Ross Scambler1,6, Tuula Niskanen1, Boris Assyov2, A. Martyn Ainsworth1, Jean-Michel Bellanger3, Michael Loizides4 , Pierre- Arthur Moreau5, Paul M. Kirk1, and Kare Liimatainen1 1Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK; corresponding author e-mail: [email protected] 2Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Str., 1113 Sofia, Bulgaria 3UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919, route de Mende, F-34293 Montpellier Cedex 5, France 4P.O. box 58499, 3734 Limassol, Cyprus 5Université de Lille, Fac. Pharma. Lille, EA 4483 IMPECS, F – 59000 Lille, France 6 Present address :Department of Applied Sciences, University of the West of England, Frenchay Campus, Coldharbour Lane, Bristol, BS16 1QY, UK Abstract: In this study, eight species of Chroogomphus are recognized from Europe: C. britannicus, C. aff. Key words: filiformis 1, C. fulmineus, C. cf. helveticus, C. mediterraneus, C. cf. purpurascens, C. rutilus, and C. subfulmineus. DNA barcode Different candidates for the application of the name C. rutilus are evaluated and the best fit to the description is ITS selected; lecto- and epitypes are chosen to fix the name. Chroogomphus fulmineus and C. mediterraneus are molecular systematics also epitypified and a new species, C. subfulmineus, is described. The infrageneric classification is revised and new taxa a new subgenus Siccigomphus and three new sections, Confusi, Filiformes, and Fulminei are introduced. The taxonomy former sections Chroogomphus and Floccigomphus are elevated to subgeneric level.