A Maternal Gluten-Free Diet Reduces Inflammation and Diabetes

Total Page:16

File Type:pdf, Size:1020Kb

A Maternal Gluten-Free Diet Reduces Inflammation and Diabetes Diabetes Volume 63, August 2014 2821 Camilla Hartmann Friis Hansen,1 Łukasz Krych,2 Karsten Buschard,3 Stine B. Metzdorff,1 Christine Nellemann,4 Lars H. Hansen,5 Dennis S. Nielsen,2 Hanne Frøkiær,1 Søren Skov,1 and Axel K. Hansen1 A Maternal Gluten-Free Diet Reduces Inflammation and Diabetes Incidence in the Offspring of NOD Mice Diabetes 2014;63:2821–2832 | DOI: 10.2337/db13-1612 Early-life interventions in the intestinal environment gluten-free (GF) diet decreased the incidence of diabetes have previously been shown to influence diabetes in- from 64% to 15% when nonobese diabetic (NOD) mice cidence. We therefore hypothesized that a gluten-free were fed a GF diet after weaning (1), and eating a GF diet (GF) diet, known to decrease the incidence of type 1 decreased the incidence of diabetes to just 6% in the off- PATHOPHYSIOLOGY diabetes, would protect against the development of spring in two generations, which indicates that the inter- diabetes when fed only during the pregnancy and lactation play between gut antigens and immune pathways leading period. Pregnant nonobese diabetic (NOD) mice were to diabetes is particularly important in the preweaning fed a GF or standard diet until all pups were weaned to period when insulitis starts to progress (2). a standard diet. The early-life GF environment dramat- Accumulating evidence suggests that gut immune ically decreased the incidence of diabetes and insulitis. reactivity is skewed in human and murine diabetic Gut microbiota analysis by 16S rRNA gene sequencing patients. Studies in young human patients with T1D revealed a pronounced difference between both moth- have demonstrated increased numbers of interferon-g ers and their offspring on different diets, characterized – – Akkermansia (IFN-g) producing, interleukin (IL)-1a producing, and by increased numbers of , Proteobacteria, – and TM7 in the GF diet group. In addition, pancreatic IL-4 producing cells in the small intestinal lamina propria, fl forkhead box P3 regulatory T cells were increased in re ecting T1D preceded by intestinal immune activation GF-fed offspring, as were M2 macrophage gene markers (3). Similarly in NOD mice, a diabetes-promoting diet fl and tight junction–related genes in the gut, while intesti- induced proin ammatory cytokines IFN-g and tumor ne- nal gene expression of proinflammatory cytokines was crosis factor-a in the small intestinal lamina propria (4), reduced. An increased proportion of T cells in the pan- and an antidiabetogenic diet decreased the high numbers + + creas expressing the mucosal integrin a4b7 suggests of CD11b CD11c dendritic cells (DCs) found in the colon that the mechanism involves increased trafficking of lamina propria (5). Under germ-free conditions, reduced gut-primed immune cells to the pancreas. In conclusion, expression of forkhead box P3 (FoxP3) in the ileum, colon, a GF diet during fetal and early postnatal life reduces and the draining lymph node was associated with acceler- the incidence of diabetes. The mechanism may involve ated development of insulitis in NOD mice (6), and, likewise changes in gut microbiota and shifts to a less proinflam- in humans, Badami et al. (7) found that jejunal biopsy matory immunological milieu in the gut and pancreas. samples from T1D patients showed reduced frequency of 2 CD4+CD25+FoxP3+CD127 regulatory T cells (Tregs). The Gluten has previously been shown to affect the devel- link between the gut and pancreas has also been empha- opment of type 1 diabetes (T1D) in animal models. A sized in studies demonstrating that pancreatic islet T cells 1Department of Veterinary Disease Biology, Faculty of Health and Medical Sci- 5Department of Biology, Faculty of Science, University of Copenhagen, Copenha- ences, University of Copenhagen, Frederiksberg, Denmark gen, Denmark 2 Department of Food Science, Faculty of Science, University of Copenhagen, Corresponding author: Camilla Hartmann Friis Hansen, [email protected]. Frederiksberg, Denmark Received 18 October 2013 and accepted 27 March 2014. 3Bartholin Institute, Rigshospitalet, Copenhagen, Denmark 4Division of Toxicology and Risk Assessment, National Food Institute, Technical © 2014 by the American Diabetes Association. Readers may use this article as University of Denmark, Søborg, Denmark long as the work is properly cited, the use is educational and not for profit, and the work is not altered. 2822 Diabetes-Protective Diet Across Two Generations Diabetes Volume 63, August 2014 express gut homing receptor a4b7 integrin, which recog- at 4 weeks of age to the STD diet. Ten pups were killed nizes mucosal addressin cell adhesion molecule-1 in the from each group at 4 weeks of age, and 10 mice from each pancreas (8,9). group were killed at 10 weeks of age. The remaining 30 Failure in immune tolerance leading to pancreatic mice in each group were killed when a diagnosis of di- b-cell depletion has been suggested to be regulated in abetes was made or at 30 weeks of age, when the study part by gliadin-induced intestinal enteropathy and innate ended. Measurements of tail blood glucose levels were immune responses (10,11). However, altered gut micro- made twice a week from 10 weeks of age, and a mouse biota, previously demonstrated in GF-fed versus gluten- was considered to be diabetic when blood glucose levels fed mice (12), might also contribute to modify intestinal exceeded 12 mmol/L on 2 consecutive days. The body inflammation and development of autoimmune diabetes. weight of all offspring was monitored once a week. In support of this, impaired oral tolerance to intestinal Histology microbes was demonstrated in NOD mice (5), and the Hematoxylin-eosin–stained pancreas sections were evalu- fi impact of microbes has also been veri ed in germ-free ated for insulitis score in a blinded fashion by two per- (13), antibiotic-treated (14,15), and probiotic-treated di- sons. Lymphocytic infiltration was graded as follows: 0, abetes-prone rodent models (16). It seems reasonable to no infiltration; 1, intact islets but with few mononuclear assume that gluten and certain microbes have a synergistic cells surrounding the islets; 2, peri-insulitis; 3, islet in- effect on the development of T1D, as was also recently filtration ,50%; and 4, islet infiltration .50%. Twenty- fi suggested by Patrick et al. (17). Cytokine pro les of gut- five islets were scored for each nondiabetic mouse killed at associated lymphoid tissue have revealed a strong associa- 10 and 30 weeks of age. tion between intestinal IFN-g production and the incidence of diabetes, especially in several gluten intervention stud- Gut Microbiota ies (4,11,17–20). Also, type 1 T-helper cells proliferated Feces samples aseptically obtained from the mothers specifically in the mesenteric lymph node (MLN) in re- during pregnancy and from the offspring at 4 and 10 sponse to wheat protein antigens (19). A GF diet was weeks of age when they were killed were analyzed by PCR fi furthermore shown to reverse this shift in gut homeosta- ampli cation of the V3 region of the 16S rRNA gene foll- sis toward an anti-inflammatory state with more trans- owed by denaturing gradient gel electrophoresis (DGGE) fi forming growth factor-b (TGF-b)–producing T cells (18). as described previously (21). The resulting DGGE pro les As early-life interventions in the intestinal environ- were analyzed using BioNumerics version 4.5 (Applied ment can influence the incidence of diabetes, we hypoth- Maths, Sint-Martens-Latem, Belgium). The composition esized that a GF diet exclusively fed to mice during of the prokaryotic community of feces samples from gestation and lactation would be sufficient to protect the the mothers and the 4-week-old pups was determined offspring from the development of diabetes even though using tag-encoded 454/FLX Titanium (Roche) pyrose- they were weaned to a standard gluten-containing (STD) quencing of the V3 and V4 regions of the 16S rRNA diet. We hypothesized that the dietary protective effect gene by the National High Throughput DNA Sequen- would be partly mediated by a shift in the gut microbiota, cing Centre, University of Copenhagen, Copenhagen, and that this shift is of imperative importance in the first Denmark (22), and was analyzed as described by Krych period of life during which the immune system develops. et al. (23). An open source software package, Quantitative Insight Into Microbial Ecology (QIIME version 1.7.0) was RESEARCH DESIGN AND METHODS used to analyze the pyrosequencing data (National Cen- ter for Biotechnology Information database accession The experiment was performed in accordance with the #PRJNA215143). Principal coordinate analysis (PCoA) Council of Europe Convention European Treaty Series was made using the jackknife_beta_diversity.py workflow 123 on the Protection of Vertebrate Animals used for (the –e value: 2,000 sequences). The PCoA plot including Experimental and Other Scientific Purposes, and the bacterial taxa was drawn out with the make_3d_plots.py Danish Animal Experimentation Act (LBK 1306 from 23 script based on the summary information of bacterial November 2007). The study was approved by the Animal phyla, and the differences in the taxa relative distribution Experiments Inspectorate, Ministry of Justice, Denmark. between categories were tested with Metastats (24) Animals and Diet independently for both the phylum-level and the genus- NOD/BomTac mice (Taconic, Hudson, NY) were fed ad level summarized taxa. The P value was calculated based libitum either a GF modified Altromin diet or an STD on 1,000 permutations. Altromin diet (Altromin, Lage, Germany), as described by Cell Isolation and Flow Cytometry Funda et al. (1). The two groups were mated separately, Single-cell suspensions from spleen, MLN, and pancreatic and their female offspring were group-housed (five mice/ lymph node (PLN) isolated from 4- and 10-week-old cage) in our barrier-protected rodent facility (Faculty of offspring immediately upon their being killed, and flow Health and Medical Sciences, University of Copenhagen, cytometric analyses of CD11b+CD11c+ DCs and T-cell Frederiksberg, Denmark) under standard conditions in populations, including FoxP3+ Tregs, were performed as open cages without filter lids.
Recommended publications
  • Fatty Acid Diets: Regulation of Gut Microbiota Composition and Obesity and Its Related Metabolic Dysbiosis
    International Journal of Molecular Sciences Review Fatty Acid Diets: Regulation of Gut Microbiota Composition and Obesity and Its Related Metabolic Dysbiosis David Johane Machate 1, Priscila Silva Figueiredo 2 , Gabriela Marcelino 2 , Rita de Cássia Avellaneda Guimarães 2,*, Priscila Aiko Hiane 2 , Danielle Bogo 2, Verônica Assalin Zorgetto Pinheiro 2, Lincoln Carlos Silva de Oliveira 3 and Arnildo Pott 1 1 Graduate Program in Biotechnology and Biodiversity in the Central-West Region of Brazil, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; [email protected] (D.J.M.); [email protected] (A.P.) 2 Graduate Program in Health and Development in the Central-West Region of Brazil, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; pri.fi[email protected] (P.S.F.); [email protected] (G.M.); [email protected] (P.A.H.); [email protected] (D.B.); [email protected] (V.A.Z.P.) 3 Chemistry Institute, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-67-3345-7416 Received: 9 March 2020; Accepted: 27 March 2020; Published: 8 June 2020 Abstract: Long-term high-fat dietary intake plays a crucial role in the composition of gut microbiota in animal models and human subjects, which affect directly short-chain fatty acid (SCFA) production and host health. This review aims to highlight the interplay of fatty acid (FA) intake and gut microbiota composition and its interaction with hosts in health promotion and obesity prevention and its related metabolic dysbiosis.
    [Show full text]
  • The Isolation of Novel Lachnospiraceae Strains and the Evaluation of Their Potential Roles in Colonization Resistance Against Clostridium Difficile
    The isolation of novel Lachnospiraceae strains and the evaluation of their potential roles in colonization resistance against Clostridium difficile Diane Yuan Wang Honors Thesis in Biology Department of Ecology and Evolutionary Biology College of Literature, Science, & the Arts University of Michigan, Ann Arbor April 1st, 2014 Sponsor: Vincent B. Young, M.D., Ph.D. Associate Professor of Internal Medicine Associate Professor of Microbiology and Immunology Medical School Co-Sponsor: Aaron A. King, Ph.D. Associate Professor of Ecology & Evolutionary Associate Professor of Mathematics College of Literature, Science, & the Arts Reader: Blaise R. Boles, Ph.D. Assistant Professor of Molecular, Cellular and Developmental Biology College of Literature, Science, & the Arts 1 Table of Contents Abstract 3 Introduction 4 Clostridium difficile 4 Colonization Resistance 5 Lachnospiraceae 6 Objectives 7 Materials & Methods 9 Sample Collection 9 Bacterial Isolation and Selective Growth Conditions 9 Design of Lachnospiraceae 16S rRNA-encoding gene primers 9 DNA extraction and 16S ribosomal rRNA-encoding gene sequencing 10 Phylogenetic analyses 11 Direct inhibition 11 Bile salt hydrolase (BSH) detection 12 PCR assay for bile acid 7α-dehydroxylase detection 12 Tables & Figures Table 1 13 Table 2 15 Table 3 21 Table 4 25 Figure 1 16 Figure 2 19 Figure 3 20 Figure 4 24 Figure 5 26 Results 14 Isolation of novel Lachnospiraceae strains 14 Direct inhibition 17 Bile acid physiology 22 Discussion 27 Acknowledgments 33 References 34 2 Abstract Background: Antibiotic disruption of the gastrointestinal tract’s indigenous microbiota can lead to one of the most common nosocomial infections, Clostridium difficile, which has an annual cost exceeding $4.8 billion dollars.
    [Show full text]
  • PDF 2672 Kb) Additional File 4: Figure S2
    Schnorr et al. BMC Microbiology (2019) 19:164 https://doi.org/10.1186/s12866-019-1540-5 RESEARCHARTICLE Open Access Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa Stephanie L. Schnorr1,2,3,4* , Courtney A. Hofman2,3, Shandukani R. Netshifhefhe5,6, Frances D. Duncan5, Tanvi P. Honap2,3, Julie Lesnik7† and Cecil M. Lewis2,3*† Abstract Background: Termites are an important food resource for many human populations around the world, and are a good supply of nutrients. The fungus-farming ‘higher’ termite members of Macrotermitinae are also consumed by modern great apes and are implicated as critical dietary resources for early hominins. While the chemical nutritional composition of edible termites is well known, their microbiomes are unexplored in the context of human health. Here we sequenced the V4 region of the 16S rRNA gene of gut microbiota extracted from the whole intestinal tract of two Macrotermes sp. soldiers collected from the Limpopo region of South Africa. Results: Major and minor soldier subcastes of M. falciger exhibit consistent differences in taxonomic representation, and are variable in microbial presence and abundance patterns when compared to another edible but less preferred species, M. natalensis. Subcaste differences include alternate patterns in sulfate-reducing bacteria and methanogenic Euryarchaeota abundance, and differences in abundance between Alistipes and Ruminococcaceae. M. falciger minor soldiers and M. natalensis soldiers have similar microbial profiles, likely from close proximity to the termite worker castes, particularly during foraging and fungus garden cultivation.
    [Show full text]
  • The Impact of Tiny Organisms: Microbial Communities and Disease States
    University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2016 The Impact of Tiny Organisms: Microbial Communities and Disease States Christel Sjöland Chehoud University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Microbiology Commons Recommended Citation Chehoud, Christel Sjöland, "The Impact of Tiny Organisms: Microbial Communities and Disease States" (2016). Publicly Accessible Penn Dissertations. 1645. https://repository.upenn.edu/edissertations/1645 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/1645 For more information, please contact [email protected]. The Impact of Tiny Organisms: Microbial Communities and Disease States Abstract In the last decade, primarily through the use of sequencing, much has been learned about the trillions of microorganisms that reside in human hosts. These microorganisms play a wide range of roles including helping our immune systems develop, digesting our food, and protecting us from the invasion of pathogenic organisms. My thesis focuses on the characterization of fungal, viral, and bacterial communities in humans, investigating the use of defined microbial communities to cure diseases in animal models, and examining the effects of human microbiome modifications through fecal microbiota transfers. In the first part of this thesis, I use deep sequencing of ribosomal RNA gene tags to characterize the composition of the bacterial, fungal, and archaeal microbiota in pediatric patients with Inflammatory Bowel Disease and healthy controls. Archaeal reads were rare in the pediatric samples, whereas an abundant amount of fungal reads was recovered. Pediatric IBD was found to be associated with reduced diversity in both fungal and bacterial gut microbiota, and specific Candida taxa were increased in abundance in the IBD samples.
    [Show full text]
  • Ruminococcaceae Genus Bacteroides Anaerotruncus Species B
    Cultivating Changing Gut Microbial Communities Lauri O. Byerley, RDN, LDN, FAND Associate Professor Louisiana State University Health Sciences Center Department of Physiology Disclaimer Research Funding Through the Years: • NCI • NIAAA • US Army • American Institute of Cancer Research • California Walnut Commission • American Public University • Louisiana State University Health Sciences Center Hippocrates….”All Diseases begin in the gut” Collaborators: DAVID WELSH CHRISTOPHER TAYLOR BRITTANY LORENZO SHELIA BANKS MENG LUO MONICA PONDER (VIRGINIA TECH) EUGENE BLANCHARD Seminar Layout • Learning objectives • Definition of terms • Introduction • Microbe view of the gut • Why cultivating microbes is important • Detecting gut microbes • Feeding our gut microbes • Proof of concept – Can we cultivate specific microbes? • Summary Learning Objectives • Diagram the GI tract from a microbe’s perspective • Describe why we should cultivate gut microbes • Explain the process by which microbes are detected • Produce a list of several different fiber types and several foods/ingredients associated with each fiber type • Describe alterations in gut microbiota following dietary changes • List the most appropriate foods to cultivate our gut microbiome Definition of Terms • Microbiota – a collection or community of microbes. Includes bacteria, fungi, archaea and viruses • Microbiome – refers to the genomes of all the microbes in a community • Metagenomics ‐ a technique that reveals biological functions of an entire community • Metabolomics – measurement of
    [Show full text]
  • Functional Comparison of Bacteria from the Human Gut and Closely
    Functional comparison of bacteria from the human gut and closely related non-gut bacteria reveals the importance of conjugation and a paucity of motility and chemotaxis functions in the gut environment Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte To cite this version: Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte. Functional comparison of bacteria from the human gut and closely related non-gut bacte- ria reveals the importance of conjugation and a paucity of motility and chemotaxis functions in the gut environment. PLoS ONE, Public Library of Science, 2016, 11 (7), pp.e0159030. 10.1371/jour- nal.pone.0159030. hal-01353535 HAL Id: hal-01353535 https://hal.archives-ouvertes.fr/hal-01353535 Submitted on 11 Aug 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License RESEARCH ARTICLE Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals
    [Show full text]
  • Staff Advice Report
    Staff Advice Report 11 January 2021 Advice to the Decision-making Committee to determine the new organism status of 18 gut bacteria species Application code: APP204098 Application type and sub-type: Statutory determination Applicant: PSI-CRO Date application received: 4 December 2020 Purpose of the Application: Information to support the consideration of the determination of 18 gut bacteria species Executive Summary On 4 December 2020, the Environmental Protection Authority (EPA) formally received an application from PSI-CRO requesting a statutory determination of 18 gut bacteria species, Anaerotruncus colihominis, Blautia obeum (aka Ruminococcus obeum), Blautia wexlerae, Enterocloster aldenensis (aka Clostridium aldenense), Enterocloster bolteae (aka Clostridium bolteae), Clostridium innocuum, Clostridium leptum, Clostridium scindens, Clostridium symbiosum, Eisenbergiella tayi, Emergencia timonensis, Flavonifractor plautii, Holdemania filiformis, Intestinimonas butyriciproducens, Roseburia hominis, ATCC PTA-126855, ATCC PTA-126856, and ATCC PTA-126857. In absence of publicly available data on the gut microbiome from New Zealand, the applicant provided evidence of the presence of these bacteria in human guts from the United States, Europe and Australia. The broad distribution of the species in human guts supports the global distribution of these gut bacteria worldwide. After reviewing the information provided by the applicant and found in scientific literature, EPA staff recommend the Hazardous Substances and New Organisms (HSNO) Decision-making Committee (the Committee) to determine that the 18 bacteria are not new organisms for the purpose of the HSNO Act. Recommendation 1. Based on the information available, the bacteria appear to be globally ubiquitous and commonly identified in environments that are also found in New Zealand (human guts). 2.
    [Show full text]
  • Metagenome-Wide Association of Gut Microbiome Features for Schizophrenia
    ARTICLE https://doi.org/10.1038/s41467-020-15457-9 OPEN Metagenome-wide association of gut microbiome features for schizophrenia Feng Zhu 1,19,20, Yanmei Ju2,3,4,5,19,20, Wei Wang6,7,8,19,20, Qi Wang 2,5,19,20, Ruijin Guo2,3,4,9,19,20, Qingyan Ma6,7,8, Qiang Sun2,10, Yajuan Fan6,7,8, Yuying Xie11, Zai Yang6,7,8, Zhuye Jie2,3,4, Binbin Zhao6,7,8, Liang Xiao 2,3,12, Lin Yang6,7,8, Tao Zhang 2,3,13, Junqin Feng6,7,8, Liyang Guo6,7,8, Xiaoyan He6,7,8, Yunchun Chen6,7,8, Ce Chen6,7,8, Chengge Gao6,7,8, Xun Xu 2,3, Huanming Yang2,14, Jian Wang2,14, ✉ ✉ Yonghui Dang15, Lise Madsen2,16,17, Susanne Brix 2,18, Karsten Kristiansen 2,17,20 , Huijue Jia 2,3,4,9,20 & ✉ Xiancang Ma 6,7,8,20 1234567890():,; Evidence is mounting that the gut-brain axis plays an important role in mental diseases fueling mechanistic investigations to provide a basis for future targeted interventions. However, shotgun metagenomic data from treatment-naïve patients are scarce hampering compre- hensive analyses of the complex interaction between the gut microbiota and the brain. Here we explore the fecal microbiome based on 90 medication-free schizophrenia patients and 81 controls and identify a microbial species classifier distinguishing patients from controls with an area under the receiver operating characteristic curve (AUC) of 0.896, and replicate the microbiome-based disease classifier in 45 patients and 45 controls (AUC = 0.765). Functional potentials associated with schizophrenia include differences in short-chain fatty acids synth- esis, tryptophan metabolism, and synthesis/degradation of neurotransmitters.
    [Show full text]
  • Metabolome and Microbiota Analysis Reveals the Conducive Effect of Pediococcus Acidilactici BCC-1 and Xylan Oligosaccharides on Broiler Chickens
    fmicb-12-683905 May 23, 2021 Time: 14:38 # 1 ORIGINAL RESEARCH published: 28 May 2021 doi: 10.3389/fmicb.2021.683905 Metabolome and Microbiota Analysis Reveals the Conducive Effect of Pediococcus acidilactici BCC-1 and Xylan Oligosaccharides on Broiler Chickens Yuqin Wu1, Zhao Lei1, Youli Wang1, Dafei Yin1, Samuel E. Aggrey2, Yuming Guo1 and Jianmin Yuan1* 1 State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing, China, 2 NutriGenomics Laboratory, Department of Poultry Science, University of Georgia, Athens, GA, United States Xylan oligosaccharides (XOS) can promote proliferation of Pediococcus acidilactic BCC-1, which benefits gut health and growth performance of broilers. The study aimed to investigate the effect of Pediococcus acidilactic BCC-1 (referred to BBC) and XOS on the gut metabolome and microbiota of broilers. The feed conversion ratio of BBC group, XOS group and combined XOS and BBC groups was lower Edited by: than the control group (P < 0.05). Combined XOS and BBC supplementation (MIX Michael Gänzle, group) elevated butyrate content of the cecum (P 0.05) and improved ileum University of Alberta, Canada < morphology by enhancing the ratio of the villus to crypt depth (P 0.05). The 16S Reviewed by: < Richard Ducatelle, rDNA results indicated that both XOS and BBC induced high abundance of butyric Ghent University, Belgium acid bacteria. XOS treatment elevated Clostridium XIVa and the BBC group enriched Shiyu Tao, Huazhong Agricultural University, Anaerotruncus and Faecalibacterium. In contrast, MIX group induced higher relative China abundance of Clostridiaceae XIVa, Clostridiaceae XIVb and Lachnospiraceae. Besides, *Correspondence: MIX group showed lower abundance of pathogenic bacteria such as Campylobacter.
    [Show full text]
  • Gastrointestinal Microbiota in Irritable Bowel Syndrome: Present State and Perspectives
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Wageningen University & Research Publications Microbiology (2010), 156, 3205–3215 DOI 10.1099/mic.0.043257-0 Review Gastrointestinal microbiota in irritable bowel syndrome: present state and perspectives Anne Salonen,1 Willem M. de Vos1,2 and Airi Palva1 Correspondence 1Department of Veterinary Biosciences, Veterinary Microbiology and Epidemiology, Anne Salonen University of Helsinki, PO Box 66, FI-00014 Helsinki, Finland [email protected] 2Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands Irritable bowel syndrome (IBS) is a functional gastrointestinal disorder that has been associated with aberrant microbiota. This review focuses on the recent molecular insights generated by analysing the intestinal microbiota in subjects suffering from IBS. Special emphasis is given to studies that compare and contrast the microbiota of healthy subjects with that of IBS patients classified into different subgroups based on their predominant bowel pattern as defined by the Rome criteria. The current data available from a limited number of patients do not reveal pronounced and reproducible IBS-related deviations of entire phylogenetic or functional microbial groups, but rather support the concept that IBS patients have alterations in the proportions of commensals with interrelated changes in the metabolic output and overall microbial ecology. The lack of apparent similarities in the taxonomy of microbiota in IBS patients may partially arise from the fact that the applied molecular methods, the nature and location of IBS subjects, and the statistical power of the studies have varied considerably. Most recent advances, especially the finding that several uncharacterized phylotypes show non-random segregation between healthy and IBS subjects, indicate the possibility of discovering bacteria specific for IBS.
    [Show full text]
  • Diversity of the Human Gastrointestinal Microbiota Novel Perspectives from High Throughput Analyses
    Diversity of the Human Gastrointestinal Microbiota Novel Perspectives from High Throughput Analyses Mirjana Rajilić-Stojanović Promotor Prof. Dr W. M. de Vos Hoogleraar Microbiologie Wageningen Universiteit Samenstelling Promotiecommissie Prof. Dr T. Abee Wageningen Universiteit Dr J. Doré INRA, France Prof. Dr G. R. Gibson University of Reading, UK Prof. Dr S. Salminen University of Turku, Finland Dr K. Venema TNO Quality for life, Zeist Dit onderzoek is uitgevoerd binnen de onderzoekschool VLAG. Diversity of the Human Gastrointestinal Microbiota Novel Perspectives from High Throughput Analyses Mirjana Rajilić-Stojanović Proefschrift Ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit, Prof. dr. M. J. Kropff, in het openbaar te verdedigen op maandag 11 juni 2007 des namiddags te vier uur in de Aula Mirjana Rajilić-Stojanović, Diversity of the Human Gastrointestinal Microbiota – Novel Perspectives from High Throughput Analyses (2007) PhD Thesis, Wageningen University and Research Centre, Wageningen, The Netherlands – with Summary in Dutch – 214 p. ISBN: 978-90-8504-663-9 Abstract The human gastrointestinal tract is densely populated by hundreds of microbial (primarily bacterial, but also archaeal and fungal) species that are collectively named the microbiota. This microbiota performs various functions and contributes significantly to the digestion and the health of the host. It has previously been noted that the diversity of the gastrointestinal microbiota is disturbed in relation to several intestinal and not intestine related diseases. However, accurate and detailed defining of such disturbances is hampered by the fact that the diversity of this ecosystem is still not fully described, primarily because of its extreme complexity, and high inter-individual variability.
    [Show full text]
  • A Randomization-Based Causal Inference Framework for Uncovering Environmental Exposure Effects on Human Gut Microbiota
    Supplementary material: A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota Alice J Sommer1,2,3,*, Annette Peters2,3,4,*, Martina Rommel3,5, Josef Cyrys3, Harald Grallert5,6, Dirk Haller7,8, Christian L M¨uller9,10,11,*, and Marie-Ab`eleC Bind1,12 1Department of Statistics, Harvard University, Cambridge, MA, USA 2Institute for Medical Information Processing, Biometry, and Epidemiology, Faculty of Medicine, Ludwig-Maximilians-University M¨unchen, Munich, Germany 3Institute of Epidemiology, Helmholtz Zentrum M¨unchen, Neuherberg, Germany 4Department of Environmental Health, Harvard T. H. Chan School of Public Health, Boston, MA, USA 5Research Unit of Molecular Epidemiology, Helmholtz Zentrum M¨unchen, Neuherberg, Germany 6German Center for Diabetes Research (DZD), M¨unchen-Neuherberg, Germany 7ZIEL - Institute for Food & Health, Technical University of Munich, Freising, Germany 8Chair of Nutrition and Immunology, Technical University of Munich, Freising, Germany 9Institute of Computational Biology, Helmholtz Zentrum M¨unchen, Neuherberg, Germany 10Department of Statistics, Ludwig-Maximilians-University M¨unchen, Munich, Germany 11Center for Computational Mathematics, Flatiron Institute, New York, NY, USA 12Biostatistics Center, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA *Corresponding authors: Alice J. Sommer: [email protected], Annette Peters: [email protected], and Chrisitan L. M¨uller:cmueller@flatironinstitute.org - 1 Gut microbiome data description (Amplicon Sequence Vari- ants) Figure 1: Gut microbiome data description. Number of observed ASV per sample (top left), se- quencing depth per sample (top right), number of sequences per ASV (bottom left), number of zero count per ASV (bottom right). 2 Min. 1st Qu. Median Mean 3rd Qu.
    [Show full text]