Aerobic Bacterial Flora of Biotic And
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Insight Into the Genome of Staphylococcus Xylosus, a Ubiquitous Species Well Adapted to Meat Products Sabine Leroy, Aurore Vermassen, Geoffrey Ras, Régine Talon
Insight into the genome of staphylococcus xylosus, a ubiquitous species well adapted to meat products Sabine Leroy, Aurore Vermassen, Geoffrey Ras, Régine Talon To cite this version: Sabine Leroy, Aurore Vermassen, Geoffrey Ras, Régine Talon. Insight into the genome of staphylo- coccus xylosus, a ubiquitous species well adapted to meat products. Microorganisms, MDPI, 2017, 5 (3), 10.3390/microorganisms5030052. hal-01607624 HAL Id: hal-01607624 https://hal.archives-ouvertes.fr/hal-01607624 Submitted on 25 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - ShareAlike| 4.0 International License microorganisms Review Insight into the Genome of Staphylococcus xylosus, a Ubiquitous Species Well Adapted to Meat Products Sabine Leroy, Aurore Vermassen, Geoffrey Ras and Régine Talon * Université Clermont-Auvergne, INRA, MEDIS, F-63000 Clermont-Ferrand, France; [email protected] (S.L.); [email protected] (A.V.); [email protected] (G.R.) * Correspondence: [email protected]; Tel.: +33-473-624-170 Received: 29 June 2017; Accepted: 25 August 2017; Published: 29 August 2017 Abstract: Staphylococcus xylosus belongs to the vast group of coagulase-negative staphylococci. It is frequently isolated from meat products, either fermented or salted and dried, and is commonly used as starter cultures in sausage manufacturing. -
Citrobacter Braakii
& M cal ed ni ic li a l C G f e Trivedi et al., J Clin Med Genom 2015, 3:1 o n l o a m n r DOI: 10.4172/2472-128X.1000129 i u c s o Journal of Clinical & Medical Genomics J ISSN: 2472-128X ResearchResearch Article Article OpenOpen Access Access Phenotyping and 16S rDNA Analysis after Biofield Treatment on Citrobacter braakii: A Urinary Pathogen Mahendra Kumar Trivedi1, Alice Branton1, Dahryn Trivedi1, Gopal Nayak1, Sambhu Charan Mondal2 and Snehasis Jana2* 1Trivedi Global Inc., Eastern Avenue Suite A-969, Henderson, NV, USA 2Trivedi Science Research Laboratory Pvt. Ltd., Chinar Fortune City, Hoshangabad Rd., Madhya Pradesh, India Abstract Citrobacter braakii (C. braakii) is widespread in nature, mainly found in human urinary tract. The current study was attempted to investigate the effect of Mr. Trivedi’s biofield treatment on C. braakii in lyophilized as well as revived state for antimicrobial susceptibility pattern, biochemical characteristics, and biotype number. Lyophilized vial of ATCC strain of C. braakii was divided into two parts, Group (Gr.) I: control and Gr. II: treated. Gr. II was further subdivided into two parts, Gr. IIA and Gr. IIB. Gr. IIA was analysed on day 10 while Gr. IIB was stored and analysed on day 159 (Study I). After retreatment on day 159, the sample (Study II) was divided into three separate tubes. First, second and third tube was analysed on day 5, 10 and 15, respectively. All experimental parameters were studied using automated MicroScan Walk-Away® system. The 16S rDNA sequencing of lyophilized treated sample was carried out to correlate the phylogenetic relationship of C. -
Intramammary Infections with Coagulase-Negative Staphylococcus Species
Printing of this thesis was financially supported by Printed by University Press, Zelzate ISBN number: 9789058642738 INTRAMAMMARY INFECTIONS WITH COAGULASE-NEGATIVE STAPHYLOCOCCUS SPECIES IN BOVINES - MOLECULAR DIAGNOSTICS AND EPIDEMIOLOGY - KARLIEN SUPRÉ 2011 PROMOTORS/PROMOTOREN Prof. dr. Sarne De Vliegher Faculteit Diergeneeskunde, UGent Prof. dr. Ruth N. Zadoks Royal (Dick) School of Veterinary Studies, University of Edinburgh; Moredun Research Institute, Penicuik, Schotland Prof. dr. Freddy Haesebrouck Faculteit Diergeneeskunde, UGent MEMBERS OF THE EXAMINATION COMMITTEE/LEDEN VAN DE EXAMENCOMMISSIE Prof. dr. dr. h. c. Aart de Kruif Voorzitter van de examencommissie Prof. dr. Mario Vaneechoutte Faculteit Geneeskunde en Gezondheidswetenschappen, UGent Dr. Margo Baele Directie Onderzoeksaangelegenheden, UGent Dr. Lic. Luc De Meulemeester MCC-Vlaanderen, Lier Prof. dr. Geert Opsomer Faculteit Diergeneeskunde, UGent Prof. dr. Marc Heyndrickx Instituut voor Landbouw en Visserijonderzoek (ILVO), Melle Dr. Suvi Taponen University of Helsinki, Finland Prof. dr. Ynte H. Schukken Cornell University, Ithaca, USA INTRAMAMMARY INFECTIONS WITH COAGULASE-NEGATIVE STAPHYLOCOCCUS SPECIES IN BOVINES - MOLECULAR DIAGNOSTICS AND EPIDEMIOLOGY - KARLIEN SUPRÉ Department of Reproduction, Obstetrics, and Herd Health Faculty of Veterinary Medicine, Ghent University Dissertation submitted in the fulfillment of the requirements for the degree of Doctor in Veterinary Sciences, Faculty of Veterinary Medicine, Ghent University INTRAMAMMAIRE INFECTIES MET COAGULASE-NEGATIEVE -
Paenibacillaceae Cover
The Family Paenibacillaceae Strain Catalog and Reference • BGSC • Daniel R. Zeigler, Director The Family Paenibacillaceae Bacillus Genetic Stock Center Catalog of Strains Part 5 Daniel R. Zeigler, Ph.D. BGSC Director © 2013 Daniel R. Zeigler Bacillus Genetic Stock Center 484 West Twelfth Avenue Biological Sciences 556 Columbus OH 43210 USA www.bgsc.org The Bacillus Genetic Stock Center is supported in part by a grant from the National Sciences Foundation, Award Number: DBI-1349029 The author disclaims any conflict of interest. Description or mention of instrumentation, software, or other products in this book does not imply endorsement by the author or by the Ohio State University. Cover: Paenibacillus dendritiformus colony pattern formation. Color added for effect. Image courtesy of Eshel Ben Jacob. TABLE OF CONTENTS Table of Contents .......................................................................................................................................................... 1 Welcome to the Bacillus Genetic Stock Center ............................................................................................................. 2 What is the Bacillus Genetic Stock Center? ............................................................................................................... 2 What kinds of cultures are available from the BGSC? ............................................................................................... 2 What you can do to help the BGSC ........................................................................................................................... -
Table of Contents
An Investigation of Staphylococcus aureus and Related Species From Flood Affected and Other Environmental Sources A Thesis in Molecular Microbiology by Nadeesha Samanmalee Jayasundara BSc (Environmental Conservation & Management) School of Biomedical Science, Institute of Health & Biomedical Innovation Queensland University of Technology Brisbane, Australia Thesis submitted to Queensland University of Technology in fulfilment of the requirements for the degree of Masters of Applied Science (Research) May 2014 2 Abstract The genus Staphylococcus consists of 45 species and is widely distributed across environments such as skin and mucous membranes of humans and animals, as well as in soil, water and air. S. aureus and S. epidermidis are the most commonly associated species with human infections. Hence, most studies have focused on clinical and clinically sourced staphylococci. In addition, S. haemoliticus, S. intermidius, S. delphini, and S. saprophiticus are also considered potentially pathogenic members of the genus. Although staphylococci are distributed in various environments, there have been very few studies examining residential air as a reservoir of clinically significant pathogens, particularly Staphylococcus species. As a result, airborne transmission of staphylococci, and associated health risks, remains unclear. This study included not only residential air but also air samples from flood affected houses. Flood water can be considered as a potential carrier of pathogenic bacteria, because flood water can be affected by residential septic systems, municipal sanitary sewer systems, hospital waste, agricultural lands/operations and wastewater treatment plants. Even after the flood waters recede, microorganisms that are transported in water can remain in soil, in or on plant materials and on numerous other surfaces. Therefore, there is a great concern for use of previously flooded indoor and outdoor areas. -
Water and Soil As Reservoirs for Mdr Genes
WATER AND SOIL AS RESERVOIRS FOR MDR GENES LUÍSA VIEIRA PEIXE UNIVERSITY OF PORTO . PORTUGAL ESCMID eLibrary 1 © by author Bacteria in the earth - appeared 3,5x109 years ago One gram of soil: up to 1010 bacterial cells & Species diversity of 4x103 to 5x104 species Antibiotics production: tens (daptomycin, vancomycin) to hundreds (erythromycin, streptomycin) of millions of years ago 2 Raynaud ESCMID & Nunan, Pone. 2014 eLibrary © by author Extensive Natural Collection of AMR Genes Antibiotic resistance is ancient: Soil, fresh and marine water phyla contain • TetM and VanA in DNA 30,000-year- old; a huge diversity of ARG genes. • Metallo-b-lactamases emerged one >> More diverse than the clinical ARG pool billion years ago. New MBL in soil Psychrobacter psychrophilus MR29-12 StrepR TetR Permafrost Siberian 15 000-35 000 anos AMR gene is the one that confers protection to a particular antibiotic (increase in MIC) when expressed. Resistome – all resistance genes of a community Network of predicted bacterial phyla for each AMR used in cross- soil comparisons (n=880) (Forsberg et al., Nature. 2014) Without human interference, selection for resistance already occurs naturally in microbial populations in soil, water and other habitats 3 Gudeta et al., FrontiersESCMID Microb. 2016; D’Costa et al, Nature. 2011; Forsberg et al, Nature.2014; Martinez J.L. Science.2010;eLibrary FEMS Microbiol Lett 296.2009; Riesenfeld et al, Envir. Microbiol. 2004 © by author What are AMR genes doing in these Bacteria? Protection against antibiotics ABR genes Physiological functions silencing E.g. detoxification; virulence, signal trafficking, intra- domain communication. 2’ N-acetyltransferase of Providencia stuartii - acetylation of peptidoglycan and gentamycin Antibiotic-producing microorganisms catQ ...Streptomyces...synthesize over half of all known antibiotics.. -
The Genera Staphylococcus and Macrococcus
Prokaryotes (2006) 4:5–75 DOI: 10.1007/0-387-30744-3_1 CHAPTER 1.2.1 ehT areneG succocolyhpatS dna succocorcMa The Genera Staphylococcus and Macrococcus FRIEDRICH GÖTZ, TAMMY BANNERMAN AND KARL-HEINZ SCHLEIFER Introduction zolidone (Baker, 1984). Comparative immu- nochemical studies of catalases (Schleifer, 1986), The name Staphylococcus (staphyle, bunch of DNA-DNA hybridization studies, DNA-rRNA grapes) was introduced by Ogston (1883) for the hybridization studies (Schleifer et al., 1979; Kilp- group micrococci causing inflammation and per et al., 1980), and comparative oligonucle- suppuration. He was the first to differentiate otide cataloguing of 16S rRNA (Ludwig et al., two kinds of pyogenic cocci: one arranged in 1981) clearly demonstrated the epigenetic and groups or masses was called “Staphylococcus” genetic difference of staphylococci and micro- and another arranged in chains was named cocci. Members of the genus Staphylococcus “Billroth’s Streptococcus.” A formal description form a coherent and well-defined group of of the genus Staphylococcus was provided by related species that is widely divergent from Rosenbach (1884). He divided the genus into the those of the genus Micrococcus. Until the early two species Staphylococcus aureus and S. albus. 1970s, the genus Staphylococcus consisted of Zopf (1885) placed the mass-forming staphylo- three species: the coagulase-positive species S. cocci and tetrad-forming micrococci in the genus aureus and the coagulase-negative species S. epi- Micrococcus. In 1886, the genus Staphylococcus dermidis and S. saprophyticus, but a deeper look was separated from Micrococcus by Flügge into the chemotaxonomic and genotypic proper- (1886). He differentiated the two genera mainly ties of staphylococci led to the description of on the basis of their action on gelatin and on many new staphylococcal species. -
Bacterial Flora on the Mammary Gland Skin of Sows and in Their Colostrum
Brief communication Peer reviewed Bacterial flora on the mammary gland skin of sows and in their colostrum Nicole Kemper, Prof, Dr med vet; Regine Preissler, DVM Summary Resumen - La flora bacteriana en la piel de Résumé - Flore bactérienne cutanée de la Mammary-gland skin swabs and milk la glándula mamaria de las hembras y en su glande mammaire de truies et de leur lait calostro samples were analysed bacteriologically. All Des écouvillons de la peau de la glande skin samples were positive, with 5.2 isolates Se analizaron bacteriológicamente hisopos de mammaire ainsi que des échantillons de lait on average, Staphylococcaceae being the la piel de la glándula mamaria y muestras de ont été soumis à une analyse bactériologique. dominant organisms. In 20.8% of milk leche. Todas las muestras de piel resultaron Tous les échantillons provenant de la peau samples, no bacteria were detected. Two iso- positivas, con 5.2 aislados en promedio, étaient positifs, avec en moyenne 5.2 isolats lates on average, mainly Staphylococcaceae siendo los Staphylococcaceae los organismos bactériens, les Staphylococcaceae étant de loin and Streptococcaceae, were isolated from the dominantes. En 20.8% de las muestras de les micro-organismes dominants. Aucune positive milk samples. leche, no se detectaron bacterias. De las bactérie ne fut détectée dans 20.8% des Keywords: swine, bacteria, colostrum, muestras de leche positivas, se aislaron échantillons de lait. En moyenne, on trouvait mammary gland, skin dos aislados en promedio, principalmente deux isolats bactériens par échantillon de lait Staphylococcaceae y los Streptococcaceae. positif, et ceux-ci étaient principalement des Received: April 7, 2010 Staphylococcaceae et des Streptococcaceae. -
Bacterial Community and PHB-Accumulating Bacteria Associated with the Wall and Specialized Niches of the Hindgut of the Forest Cockchafer (Melolontha Hippocastani)
fmicb-08-00291 February 25, 2017 Time: 15:46 # 1 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Frontiers - Publisher Connector ORIGINAL RESEARCH published: 28 February 2017 doi: 10.3389/fmicb.2017.00291 Bacterial Community and PHB-Accumulating Bacteria Associated with the Wall and Specialized Niches of the Hindgut of the Forest Cockchafer (Melolontha hippocastani) Pol Alonso-Pernas1*†, Erika Arias-Cordero1†, Alexey Novoselov1, Christina Ebert2,3, Jürgen Rybak4, Martin Kaltenpoth5, Martin Westermann6, Ute Neugebauer2,3 and Edited by: Wilhelm Boland1* Martin Grube, University of Graz, Austria 1 Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, Jena, Germany, 2 Center for Sepsis Control and Care, Jena University Hospital, Jena, Germany, 3 Leibniz Institute of Photonic Technology, Jena, Germany, Reviewed by: 4 Department of Evolutionary Neuroethology, Max Planck Institute for Chemical Ecology, Jena, Germany, 5 Department of Armin Erlacher, Evolutionary Ecology, Institute of Zoology, Johannes Gutenberg University Mainz, Mainz, Germany, 6 Electron Microscopy Graz University of Technology, Austria Center, Jena University Hospital, Jena, Germany Tomislav Cernava, Austrian Centre of Industrial Biotechnology, Austria A characterization of the bacterial community of the hindgut wall of two larval and *Correspondence: the adult stages of the forest cockchafer (Melolontha hippocastani) was carried Pol Alonso-Pernas [email protected] out using amplicon sequencing of the 16S rRNA gene fragment. We found that, Wilhelm Boland in second-instar larvae, Caulobacteraceae and Pseudomonadaceae showed the [email protected] highest relative abundances, while in third-instar larvae, the dominant families were †These authors have contributed equally to this work. -
Bacterial Involvements in Ulcerative Colitis: Molecular and Microbiological Studies
BACTERIAL INVOLVEMENTS IN ULCERATIVE COLITIS: MOLECULAR AND MICROBIOLOGICAL STUDIES Samia Alkhalil A thesis submitted in partial fulfilment of the requirements for the award of the degree of Doctor of Philosophy of the University of Portsmouth Institute of Biomedical and biomolecular Sciences School of Pharmacy and Biomedical Sciences October 2017 AUTHORS’ DECLARATION I declare that whilst registered as a candidate for the degree of Doctor of Philosophy at University of Portsmouth, I have not been registered as a candidate for any other research award. The results and conclusions embodied in this thesis are the work of the named candidate and have not been submitted for any other academic award. Samia Alkhalil I ABSTRACT Inflammatory bowel disease (IBD) is a series of disorders characterised by chronic intestinal inflammation, with the principal examples being Crohn’s Disease (CD) and ulcerative colitis (UC). A paradigm of these disorders is that the composition of the colon microbiota changes, with increases in bacterial numbers and a reduction in diversity, particularly within the Firmicutes. Sulfate reducing bacteria (SRB) are believed to be involved in the etiology of these disorders, because they produce hydrogen sulfide which may be a causative agent of epithelial inflammation, although little supportive evidence exists for this possibility. The purpose of this study was (1) to detect and compare the relative levels of gut bacterial populations among patients suffering from ulcerative colitis and healthy individuals using PCR-DGGE, sequence analysis and biochip technology; (2) develop a rapid detection method for SRBs and (3) determine the susceptibility of Desulfovibrio indonesiensis in biofilms to Manuka honey with and without antibiotic treatment. -
December 20, 2018 Genmark Diagnostics, Incorporated Alan Maderazo VP, Quality, Regulatory & Clinical Affairs 5964 La Place Court Carlsbad, California 92008
December 20, 2018 GenMark Diagnostics, Incorporated Alan Maderazo VP, Quality, Regulatory & Clinical Affairs 5964 La Place Court Carlsbad, California 92008 Re: K181663 Trade/Device Name: ePlex Blood Culture Identification Panel - Gram Positive (BCID-GP) Panel Regulation Number: 21 CFR 866.3365 Regulation Name: Multiplex nucleic acid assay for identification of microorganisms and resistance markers from positive blood cultures Regulatory Class: Class II Product Code: PAM, PEN, PEO Dated: June 22, 2018 Received: June 25, 2018 Dear Alan Maderazo: We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. Although this letter refers to your product as a device, please be aware that some cleared products may instead be combination products. The 510(k) Premarket Notification Database located at https://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfpmn/pmn.cfm identifies combination product submissions. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration. Please note: CDRH does not evaluate information related to contract liability warranties. -
First Report of Staphylococcus Isolates Identified by Genomic Analysis from Rhizospheric Soils of Capsicum Annuum L
Scientia Agropecuaria 11(2): 237 – 240 (2020) SCIENTIA AGROPECUARIA a. Facultad de Ciencias Agropecuarias Scientia Agropecuaria Universidad Nacional de Website: http://revistas.unitru.edu.pe/index.php/scientiaagrop Trujillo SHORT COMMUNICATION First report of Staphylococcus isolates identified by genomic analysis from rhizospheric soils of Capsicum annuum L. cv Piquillo Cristian Daniel Asmat Ortega* ; Bryan Pierre Cruz-Valderrama Sánchez ; Mercedes Elizabeth Chaman Medina Laboratorio de Fisiología Vegetal. Universidad Nacional de Trujillo, Av. Juan Pablo II s/n. Ciudad Universitaria, Trujillo, Peru. Received April 3, 2020. Accepted May 15, 2020. Abstract The genus Staphylococcus comprises many species which can be isolated from many sources and could display plant growth-promoting properties. Moreover, Capsicum species are important export crops in Peru, which have gained greater interest in recent years. Therefore, the objective of this research was to identify Staphylococcus isolates from rhizospheric soil samples of C. annuum cv. Piquillo in La Libertad, Peru. Bacterial isolates were identified by genomic analysis targeting the 16s rRNA gene. Bacteria were isolated from samples by serial dilutions and cultured in solid medium agar plates. Then, genomic DNA extraction from pure and morphologically distinct isolates, 16s rRNA gene amplification, sequencing and bioinformatic analysis were performed. We found four bacterial isolates from the genus Staphylococcus not previously reported in C. annuum rhizospheric soils: Isolate Ca2 and Ca5 which both match to Staphylococcus sp., isolate Ca6 to Staphylococcus arlettae and isolate Ca7 to Staphylococcus xylosus. Further studies to assess these isolates’ impact on crops as well as their potential applications in other fields of research such as antimicrobial development, food processing and pesticide biodegradation are recommended.